prot_C-linearis_contig104.915.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig104.915.1
Unique Nameprot_C-linearis_contig104.915.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length248
Homology
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BLAST of mRNA_C-linearis_contig104.915.1 vs. uniprot
Match: A0A6H5KAX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAX4_9PHAE)

HSP 1 Score: 369 bits (946), Expect = 4.540e-127
Identity = 183/232 (78.88%), Postives = 209/232 (90.09%), Query Frame = 0 
Query:   11 LWLTKTCSFVTLPGIASRQR-TAALSTGSGMPMPPSPEELKARAAAIREELKELEASASVNRRPNAELAEPKRVVPFPETLLDSCWKVVLELRGVKSDKNRIPVRLVFCCKFAADDFILEVEGDHRFVKRGYVWEPDRNEEDDKEFITFIAQVEGLSAVPDGRIYMNAYIDTTKGDDGKTRYKFSDGAVTIKEVINKSFWGIFNTAGLLAEFKVVGTWDAFPIDALPDTPSS 241
            LWLT T SF+ +P IA+R+R T  L +G    +PPSPE L+ARAAAIREELKELEA+A+  RRPNAELAEPKRVVPFPETLLDSCWK+V++LRGVKSDKNR+PVRLVFCCKFA +DFILEVE D+RFVKRGYVWEPDRN+++DKEFITFIA+VEGLSAVPDGRI+MN +ID  +GDDGKTRYKFS+GAVTIKEVI+KSFWG+FNTAGLLAEFKVVGTWDA PIDALP+  SS
Sbjct:   11 LWLTPTHSFMAVPPIAARKRVTTQLHSGEDGRIPPSPETLRARAAAIREELKELEANAAATRRPNAELAEPKRVVPFPETLLDSCWKIVMDLRGVKSDKNRVPVRLVFCCKFAEEDFILEVESDNRFVKRGYVWEPDRNDDEDKEFITFIAEVEGLSAVPDGRIFMNGFIDKIEGDDGKTRYKFSEGAVTIKEVIDKSFWGVFNTAGLLAEFKVVGTWDASPIDALPEKQSS 242
[Close]
BLAST of mRNA_C-linearis_contig104.915.1 vs. uniprot
Match: A0A836CMB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB8_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.200e-24
Identity = 56/117 (47.86%), Postives = 79/117 (67.52%), Query Frame = 0 
Query:  120 KFAADDFILEVEGDHRFVKRGYVWEPDRNEEDDKEFITFIAQVEGLSAVPDGRIYMNAYIDTTKGDDGKTRYKFSDGAVTIKEVINKSFWGIFNTAGLLAEFKVVGTWDAFPIDALP 236
            +F++DD IL V      + RGY+W PDR+   ++ +I F   V+GLSAVPDG++Y+NA +D    DD    YK SDG +TIKEV N+  +G+F+ AG+LAEFKVVG + A P+  +P
Sbjct:   71 RFSSDDNILLVSAGTPAITRGYIWAPDRDA--NRTYIAFDIGVKGLSAVPDGKLYLNARVDQ---DDATGGYKLSDGVLTIKEVDNRRGFGLFSFAGILAEFKVVGEFVATPLREMP 182
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.915.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAX4_9PHAE4.540e-12778.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CMB8_9STRA1.200e-2447.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 46..66
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..247
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.731

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:491375..493647 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.915.1mRNA_C-linearis_contig104.915.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig104 491330..494596 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig104.915.1 ID=prot_C-linearis_contig104.915.1|Name=mRNA_C-linearis_contig104.915.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=248bp
MRVAWVAWSTLWLTKTCSFVTLPGIASRQRTAALSTGSGMPMPPSPEELK
ARAAAIREELKELEASASVNRRPNAELAEPKRVVPFPETLLDSCWKVVLE
LRGVKSDKNRIPVRLVFCCKFAADDFILEVEGDHRFVKRGYVWEPDRNEE
DDKEFITFIAQVEGLSAVPDGRIYMNAYIDTTKGDDGKTRYKFSDGAVTI
KEVINKSFWGIFNTAGLLAEFKVVGTWDAFPIDALPDTPSSNTPSSE*
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