mRNA_C-linearis_contig104.915.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.915.1
Unique NamemRNA_C-linearis_contig104.915.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig104.915.1 vs. uniprot
Match: A0A6H5KAX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAX4_9PHAE)

HSP 1 Score: 369 bits (947), Expect = 3.650e-122
Identity = 183/232 (78.88%), Postives = 209/232 (90.09%), Query Frame = 1 
Query:   76 LWLTKTCSFVTLPGIASRQR-TAALSTGSGMPMPPSPEELKARAAAIREELKELEASASVNRRPNAELAEPKRVVPFPETLLDSCWKVVLELRGVKSDKNRIPVRLVFCCKFAADDFILEVEGDHRFVKRGYVWEPDRNEEDDKEFITFIAQVEGLSAVPDGRIYMNAYIDTTKGDDGKTRYKFSDGAVTIKEVINKSFWGIFNTAGLLAEFKVVGTWDAFPIDALPDTPSS 768
            LWLT T SF+ +P IA+R+R T  L +G    +PPSPE L+ARAAAIREELKELEA+A+  RRPNAELAEPKRVVPFPETLLDSCWK+V++LRGVKSDKNR+PVRLVFCCKFA +DFILEVE D+RFVKRGYVWEPDRN+++DKEFITFIA+VEGLSAVPDGRI+MN +ID  +GDDGKTRYKFS+GAVTIKEVI+KSFWG+FNTAGLLAEFKVVGTWDA PIDALP+  SS
Sbjct:   11 LWLTPTHSFMAVPPIAARKRVTTQLHSGEDGRIPPSPETLRARAAAIREELKELEANAAATRRPNAELAEPKRVVPFPETLLDSCWKIVMDLRGVKSDKNRVPVRLVFCCKFAEEDFILEVESDNRFVKRGYVWEPDRNDDEDKEFITFIAEVEGLSAVPDGRIFMNGFIDKIEGDDGKTRYKFSEGAVTIKEVIDKSFWGVFNTAGLLAEFKVVGTWDASPIDALPEKQSS 242
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BLAST of mRNA_C-linearis_contig104.915.1 vs. uniprot
Match: A0A836CMB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB8_9STRA)

HSP 1 Score: 105 bits (263), Expect = 9.650e-23
Identity = 56/117 (47.86%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:  403 KFAADDFILEVEGDHRFVKRGYVWEPDRNEEDDKEFITFIAQVEGLSAVPDGRIYMNAYIDTTKGDDGKTRYKFSDGAVTIKEVINKSFWGIFNTAGLLAEFKVVGTWDAFPIDALP 753
            +F++DD IL V      + RGY+W PDR+   ++ +I F   V+GLSAVPDG++Y+NA +D    DD    YK SDG +TIKEV N+  +G+F+ AG+LAEFKVVG + A P+  +P
Sbjct:   71 RFSSDDNILLVSAGTPAITRGYIWAPDRDA--NRTYIAFDIGVKGLSAVPDGKLYLNARVDQ---DDATGGYKLSDGVLTIKEVDNRRGFGLFSFAGILAEFKVVGEFVATPLREMP 182
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAX4_9PHAE3.650e-12278.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CMB8_9STRA9.650e-2347.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:491330..494596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_001100.1
Exons4
Model size1738
Cds size744
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.915.1prot_C-linearis_contig104.915.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 491375..493647 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927389.4067106-UTR-C-linearis_contig104:491329..4913741622927389.4067106-UTR-C-linearis_contig104:491329..491374Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 491330..491374 +
1690879671.4072013-UTR-C-linearis_contig104:491329..4913741690879671.4072013-UTR-C-linearis_contig104:491329..491374Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 491330..491374 +
1622927389.4702964-UTR-C-linearis_contig104:493647..4945961622927389.4702964-UTR-C-linearis_contig104:493647..494596Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 493648..494596 +
1690879671.4525123-UTR-C-linearis_contig104:493647..4945961690879671.4525123-UTR-C-linearis_contig104:493647..494596Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 493648..494596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927389.4189944-CDS-C-linearis_contig104:491374..4916201622927389.4189944-CDS-C-linearis_contig104:491374..491620Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 491375..491620 +
1690879671.4162273-CDS-C-linearis_contig104:491374..4916201690879671.4162273-CDS-C-linearis_contig104:491374..491620Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 491375..491620 +
1622927389.4295688-CDS-C-linearis_contig104:492239..4924091622927389.4295688-CDS-C-linearis_contig104:492239..492409Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 492240..492409 +
1690879671.424353-CDS-C-linearis_contig104:492239..4924091690879671.424353-CDS-C-linearis_contig104:492239..492409Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 492240..492409 +
1622927389.4388442-CDS-C-linearis_contig104:492607..4927411622927389.4388442-CDS-C-linearis_contig104:492607..492741Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 492608..492741 +
1690879671.4328558-CDS-C-linearis_contig104:492607..4927411690879671.4328558-CDS-C-linearis_contig104:492607..492741Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 492608..492741 +
1622927389.4494247-CDS-C-linearis_contig104:493453..4936471622927389.4494247-CDS-C-linearis_contig104:493453..493647Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 493454..493647 +
1690879671.442147-CDS-C-linearis_contig104:493453..4936471690879671.442147-CDS-C-linearis_contig104:493453..493647Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 493454..493647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.915.1

>prot_C-linearis_contig104.915.1 ID=prot_C-linearis_contig104.915.1|Name=mRNA_C-linearis_contig104.915.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=248bp
MRVAWVAWSTLWLTKTCSFVTLPGIASRQRTAALSTGSGMPMPPSPEELK
ARAAAIREELKELEASASVNRRPNAELAEPKRVVPFPETLLDSCWKVVLE
LRGVKSDKNRIPVRLVFCCKFAADDFILEVEGDHRFVKRGYVWEPDRNEE
DDKEFITFIAQVEGLSAVPDGRIYMNAYIDTTKGDDGKTRYKFSDGAVTI
KEVINKSFWGIFNTAGLLAEFKVVGTWDAFPIDALPDTPSSNTPSSE*
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mRNA from alignment at C-linearis_contig104:491330..494596+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.915.1 ID=mRNA_C-linearis_contig104.915.1|Name=mRNA_C-linearis_contig104.915.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3267bp|location=Sequence derived from alignment at C-linearis_contig104:491330..494596+ (Chordaria linearis ClinC8C monoicous)
TCTTCCTTGGCCCTTCTCGGCCCCTGTGCCTTTTTGTCTGCTACCATGAG
GGTGGCTTGGGTTGCGTGGTCAACGCTATGGCTGACGAAGACCTGCTCCT
TCGTCACTTTACCTGGCATTGCTTCGCGGCAACGCACCGCCGCATTGTCC
ACGGGTTCAGGGATGCCGATGCCTCCGTCCCCTGAGGAGCTGAAAGCAAG
AGCCGCGGCGATCCGCGAGGAGCTCAAGGAATTAGAGGCCAGTGCGTCCG
TGAATAGGCGACCAAACGCTGAGCTGGCTGAGCCGAAACGGGTGAGAGCA
AAAGCTTGCGCAACAGTAAGCTCAGGTTTGTACAACCTCATGTGGCCAGC
GCTCAGGCCTGACGTGACGAACGTCACCAGAAGACATGTTCGGCATCAGC
CATGCAAGAACTTTGCCTTTTGTGTGTCCTTCCTGCTTGCTACGCGTGTT
CGGCTCAGATCCTTGCTTGCATACACGACAATTTTTTTCATAATGCATTT
ATGGTGTTCGCGGGGACGAATCGCCACACACAGGTTTTTACATTTCTGGC
ACGAGAGGGGAAACGTAAAAAGTAAAAAAAACAACACTTTACACGTACTG
GGCCGGATTTGAGTTCAGATCTGTGCGTCTCGCCGCGGGGCTGTATTCGA
TCGTTTACGCTTCTTAGTCGATTCCTCGCCCTTGAAACGAGAGCGCTCCA
AGTTGAAACTATAGTTTCCCATTTCCCCTCCATCTGCGTGTGCCTTGTCG
TCCAGGCGTCGTGTCCGGCAACACGAAGGTATGGTATAAACTCTCTCCCT
ACCGGGCAGCGCGCTCTTTACAGCCGTCTCACATGATGACCGCGTCGGAA
AGCATCCACGAAAGAGTACTCAAATCAAACCAAACCAAACCGGCCCCCCG
ATCAAATCAGGTGGTGCCATTTCCCGAGACGCTGCTGGATAGCTGCTGGA
AGGTTGTGCTGGAGCTTCGCGGCGTGAAGAGCGACAAGAACCGGATACCC
GTCCGCCTCGTCTTCTGCTGCAAGTTCGCCGCGGACGACTTCATCCTGGA
AGTGGAGGGAGACCATCGTTTCGTCAAACGGTGAGCTTAAGCTACGAGCG
CGGCAAAGCATAGGCCACGCCCCCTGTACTACTACGTCTCGCCGGCGGCC
GGCCACTCTTACAACTACGGGTAAGGCTCGGTGCTCGATTAATATGTACC
TAGCCCTCCTTGGAGGTCCGACAAGCAAAGACGACGCTTGCCCCCGCACA
TCCCCGTTGCTGCTTGCTGAAAAAAAAGGGGCTACGTGTGGGAGCCTGAC
CGGAACGAGGAGGACGACAAGGAGTTCATCACGTTCATCGCGCAGGTGGA
GGGGCTGTCGGCGGTGCCTGACGGGAGGATATACATGAACGCCTACATCG
ACACCACCAAGGGTGAGAAAAGGGCAAGGAAGTCTTCGTCTTCCCTACAA
GATTACATCCTTCATTAAGATGGATGCATGTGTGTAGTTGCTGTCCTACC
TATACAGCATATGATATGTAGAACGAATGCCGGCGTGGAGCATTCGAGGT
GCTTTGCCTCCCGCGGTTTTTGGCTGGATTGGTTGTTGGCATGAGCGCTT
TACGGGGCATTCCGTATTGTCACGCGGGTGACTCTTCTTTTCGCCGCGCG
AGCGTCGAAGCTTGCTCGATTGCTTGTACATACGCTAGTGACGCAGTGTG
GTTTGGTGTCTCGTGGCGTAGGCCATGTCAGTGCGCCCCGACCGAACGCG
CCGACAGAAAACAGGGCCGACTGCCTCTGCGTGACACGCACGCTGCGCGA
CACGCACGCTGCCCGTTTGCCTTTGCCGAGGACGCGTCACGCTTGGTGGA
TACTTTCTTCGCTTTGTCGGCCCATCAGGGAGAGAAGCGCAAATGGCTTT
TTGTGTCGCCAAGGCTTTTCGATTTTGTGCGCACCTCTCTCTCCATCTGC
CTCCGGTGTGTTGCGGCGGTGGTTGTGGCGCACACAGGCTCACTATAATA
GTACGTCGAGCCTTGTCCGAGCTAATTTGGAGAAGCAATGCTCAACACAG
ATACGAAGTAGATGTGTTCTCGCACGCGTTTCCCCTGCTTCCATCGCCGA
CCTCCCTCCCTCTCTCCCCCACAGGAGACGACGGCAAGACCCGGTACAAA
TTTAGCGACGGGGCCGTGACTATCAAGGAGGTCATCAACAAGTCGTTCTG
GGGGATATTCAACACGGCGGGTCTGCTGGCCGAGTTCAAGGTCGTGGGGA
CGTGGGACGCTTTCCCGATAGACGCGTTGCCCGACACGCCGTCGTCCAAC
ACCCCCTCGTCGGAGTAGAAAAAATTGGGCGTCGGGATAAGGCTGGCGTT
CGTCACTCTTTGTAAATTGTCTTGTTTTTAGGGGAAACAATGGTTTTAGG
AAAAACATCGTCGCGGGGGGGGAAGAAGTGCCTCCGCGTTCGTTGGCTTT
GGATGCTCTGGGCACTTGTGTGGTTTTATGAACGAACGCCGTAACAGGAG
ACCTGGTTCGATTTGAACGCCGTCGGGGCCGCAGATTGACGGAGTGCTGC
GGCTAGATTACGTTGCTGTTGGTGTGGGAGGGACAGAGTATCAGCAGGTC
ACTAAATAGGTCGTGTGGGGTAACGTGTAGCTCTTGTACATCTGACGCAA
GGAGATCGGGTTTTGTCTCTTTTAGAGGAGTGGTGTTGACGGTATGAAGC
AGCCCGCGAGCTCTTTGTCTCGGGGGGGAGGGAACGAAGGTGTTATATCA
GTAGAAGGGCACTCTTGAAATTGGCGACCAGGTCCCTTGTTATCGTTGAA
CTTTGTGTGTCTTTTGTGTTTCGTTTTGGTCGTGGCGAATGTATCTGGAG
ACTAGACCGTTTAAAACGGTTCCTGGATGTCGTAGGAAGGGCGAAATGGT
TCGTTGAAACACAGGGAAAATCAAGGAACTGCTGTCATCGTAGAAAAGCT
CGTGCGCGTGCCAACGACTTGGTTGAGCGGTCAAGAGGGTTCTGTTTCTT
TGTGGGTGCGCCCGATATGTTCGTGCTGTCGGCTGGATGAAATTACAGAT
TGTTTTAGACCGAAGTCGGTGCCTAGCCCTCCCATGCCCGAACATGGTAG
TTGACCCCCGTCATAGCCTCATAATGGACGGAGCAGGATTTTTGGGAGGA
TAGAACTTGGCTTGTAGAAAAGGGGCGGTACGTTTTTCTGATAAGGACAC
TCAATAACATCACCCCAACGCGCTTGCTTTCTTGAATTCTGAACCACCGC
CGTTCAGACCAACAAAT
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Coding sequence (CDS) from alignment at C-linearis_contig104:491330..494596+

>mRNA_C-linearis_contig104.915.1 ID=mRNA_C-linearis_contig104.915.1|Name=mRNA_C-linearis_contig104.915.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at C-linearis_contig104:491330..494596+ (Chordaria linearis ClinC8C monoicous)
ATGAGGGTGGCTTGGGTTGCGTGGTCAACGCTATGGCTGACGAAGACCTG
CTCCTTCGTCACTTTACCTGGCATTGCTTCGCGGCAACGCACCGCCGCAT
TGTCCACGGGTTCAGGGATGCCGATGCCTCCGTCCCCTGAGGAGCTGAAA
GCAAGAGCCGCGGCGATCCGCGAGGAGCTCAAGGAATTAGAGGCCAGTGC
GTCCGTGAATAGGCGACCAAACGCTGAGCTGGCTGAGCCGAAACGGATGA
GGGTGGCTTGGGTTGCGTGGTCAACGCTATGGCTGACGAAGACCTGCTCC
TTCGTCACTTTACCTGGCATTGCTTCGCGGCAACGCACCGCCGCATTGTC
CACGGGTTCAGGGATGCCGATGCCTCCGTCCCCTGAGGAGCTGAAAGCAA
GAGCCGCGGCGATCCGCGAGGAGCTCAAGGAATTAGAGGCCAGTGCGTCC
GTGAATAGGCGACCAAACGCTGAGCTGGCTGAGCCGAAACGGGTGGTGCC
ATTTCCCGAGACGCTGCTGGATAGCTGCTGGAAGGTTGTGCTGGAGCTTC
GCGGCGTGAAGAGCGACAAGAACCGGATACCCGTCCGCCTCGTCTTCTGC
TGCAAGTTCGCCGCGGACGACTTCATCCTGGAAGTGGAGGGAGACCATCG
TTTCGTCAAACGGTGGTGCCATTTCCCGAGACGCTGCTGGATAGCTGCTG
GAAGGTTGTGCTGGAGCTTCGCGGCGTGAAGAGCGACAAGAACCGGATAC
CCGTCCGCCTCGTCTTCTGCTGCAAGTTCGCCGCGGACGACTTCATCCTG
GAAGTGGAGGGAGACCATCGTTTCGTCAAACGGGGCTACGTGTGGGAGCC
TGACCGGAACGAGGAGGACGACAAGGAGTTCATCACGTTCATCGCGCAGG
TGGAGGGGCTGTCGGCGGTGCCTGACGGGAGGATATACATGAACGCCTAC
ATCGACACCACCAAGGGGGCTACGTGTGGGAGCCTGACCGGAACGAGGAG
GACGACAAGGAGTTCATCACGTTCATCGCGCAGGTGGAGGGGCTGTCGGC
GGTGCCTGACGGGAGGATATACATGAACGCCTACATCGACACCACCAAGG
GAGACGACGGCAAGACCCGGTACAAATTTAGCGACGGGGCCGTGACTATC
AAGGAGGTCATCAACAAGTCGTTCTGGGGGATATTCAACACGGCGGGTCT
GCTGGCCGAGTTCAAGGTCGTGGGGACGTGGGACGCTTTCCCGATAGACG
CGTTGCCCGACACGCCGTCGTCCAACACCCCCTCGTCGGAGTAGGAGACG
ACGGCAAGACCCGGTACAAATTTAGCGACGGGGCCGTGACTATCAAGGAG
GTCATCAACAAGTCGTTCTGGGGGATATTCAACACGGCGGGTCTGCTGGC
CGAGTTCAAGGTCGTGGGGACGTGGGACGCTTTCCCGATAGACGCGTTGC
CCGACACGCCGTCGTCCAACACCCCCTCGTCGGAGTAG
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