mRNA_C-linearis_contig104.913.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.913.1 vs. uniprot
Match: D8LEF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF4_ECTSI) HSP 1 Score: 717 bits (1851), Expect = 2.260e-213 Identity = 940/2292 (41.01%), Postives = 1077/2292 (46.99%), Query Frame = 2
Query: 29 MEEGGPSMPAG-SSGRGQILPNPATDSFKDDIQAIGRAVERLRDGFVGADSSSPKPTPTHDSSQ-SGGFVSSSYASGGGCRSAGKRGGAGSGGLPATILTERSQKAYSSLSSARGGGSGSLVGGGTTPVESSMGNSNGRLSLRELRSADEARKFYADERARATVDTAGDHRDAAAVGMALASGEKAPTSI-----------GSSTGSRNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDTPRGAPEE----GQLRLQGD-QGSLLTSDGETPAAG-----SPGRRG---------GEGWKHEVRDRSQKEACSNGRNGSCGSAAAAREQGSEEEGSAGEAGGVVPAESGSLFELRDALRSREKELLRLERDVSVVASSAGGFNRLAASLGSSNTNNAGTGQRRSFAFDH---------------------RGDAEEDGDRSGSRSGAPGASYLFSSGGLGGADGASGSGSGLLLPRHSVESSLAGTSASHLTTASMAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAPVAVSGSPLVASAHEGLRQMRVMLEQRAVEAERAKDDSKNMTASLNDVSARLRRSERRRAAQATELAEARAAADAAKSELSRALARHRAKEKRXXXXXXXXXXXDKKKESEAAAREAREKKAVSDGFLADPARQRQLFERDAEISRLRDRLEAAAGELSEEQGTTASLRTRLESSEREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRTAE--EEGRRHAREATRARESLRVERGGKARLALELEAAVRERTQAVEKLAAAEAEAGRLH-VKLSAASTAAEDIXXXXXXXXXXXXXXXXXXXXXANLTAALVLAREGQEAERGRFDRESKRAAALGEELVASEARRKVQEEEVALVRKQVSRLDAKIEEDMIREKAKSDATAEATAAGAERESDSLRASL--------------------------------RQTEAELLASRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMAAQASRQDKDTLKRGLVASQTACAELRAERSRLLSELEHAASSAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLKRQAE-VSEREHRTSVVVAGQVSHAARGRAXXXXXXXXGDEE------------RARLQEALRGSCRVMGRVATALSAAADDGTGSPRHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAFSVDGH-SGAGDGGDGGHRRYVVGSSFGDSSDGGDEGSTGDEARRVVSRSEVREVSERLRFEASRLLGVRADEQRAAEDKKARLRQDLRDSESREAEAAARLEESRELSREQTGFVEGVWKERRRLESELDDRREEVDRLRASEDAARAAAAVLDGKVEDMSAALRQEKARAKREAEAAVAAEARDAVEALRRQLDDLRKEVDRTKSDQLDDGGGGVRGRGSNPDGAASGLPAADGAGQPRGVRRKGESSAAAAVGGVVASPTSPPSLAVLEAEFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREFQGALEALKLSQELLLRIHRQRQGHHHGTDTNNV-----PATASDPSNT-TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPGVEARAS-STDAHVHELAAQASKLRGMSGNVKRLLEIAAGEVQGALEDTRGSLGVAAAXXXXXXXXVAGTQTHQESGGPTKEEVDALKQQLRDATAAARALEVDKSRLDGELGTAVGELARVQGLLREKAAEALVLEAQVARLEAEGRETREALSAA-DDRLAGTEATEAQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVXXXXXXXSRSQERARLAAEASAAELRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAELDRQVKITGAARVATRAAEGAAAAAHAREGMGRERRELGEKSGRLEGPVQQQEVSRLKESLEREAERRGQLEKECKVLAARATDLEAALISASSEVRKAAKLAAERGARFERDATALSEETARLK----AXXQXXXXXXXXXXXXXXXXXXXXXXXXXAVAVAEAAERARREGTKDEQXXXXXXXXXXXRDCAALRKEMSETTGTLEAETTLRARAAQELSAHRRRVEELEAALEREKATARAASEVARKAASDSPMSQLQAEMRSVISSLE 6562
MEE P +P+ ++G G +P DSFKDDIQAIGRAVERLRDGF G DSSSP P P HDS+Q GG SS ASG G S G G GG P L S+ L AR G SG G T+ +E + S+GRLSLRELRSAD++R Y+DERAR D AGD A A GE A T G S+GS +S D GA E G LRL+GD + SL T+ T +A SP R G+G R ++ +G G+A A E G AESG LFELRDALRSRE++LLRL+RDVSVVA+SA GF L+ASLGS N + SF+F G A G GSR+G G + GA G G+LL R +S+L GT+ S T A+ XXXXXX G A +A SGSPLVASAHEGL++MR +LEQRA+E RA DDSK M SLNDVSARLRRSER+R AQA ELA+ XXXXXXXXXXX K + AAR G LA+ A++ RLRDRLE A GE +S++E XXXXXXXXXXXXXXXX +AE A AEAEAGRLH V+ S+ AE ANLTAALVLAREGQEAERGRFDRESKRAAALGEELVASEARRKVQEEE++LVRKQVSRLDAKIE DM R KA SDATA ATAAGAERE++SLRAS R+ EAEL AS + XXXX AA+A++ DKDT LSELEHAA+SAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RLKR+ + VS+RE + G V +AR + G ++ R LQEALR SC VM R+A+ALSAAA D S R G XXXXXXXXXXXXXXXXXXXXXXXXXXXX RAFSVD + SG GD + FGD ++ G EG + RRVVSR+EVREV+ERLRFEA+RLLGVR +E++AA D A LR+DLRDSESREAE ARLEESRELSREQTGFVEGVWKER RL +RLRASEDAAR AA VLDGKV D+SAALRQE+ARAKREAEAAVAAEARDA+EALR+QLDDLRK E EFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREF+GALEALKLSQELLLRIHRQRQ + T+ PA A P + RP A +S STDAHVHELAAQASKLRGMSGNVKRLL++AAGEVQGALEDTR SLGVA A GTQT + GPT+ EV+ L+QQ+ A +A E +K RL GEL AVGEL ++QGLL +K +EA+VLEA VARLE E E REA SAA +D LA EA L EV +RSQERARLA AELR LEAEL RQ K AARV + E R L +SGR E RE ERR ++E+ECKVL AR DLEAAL ++E++KAA E GA ER+ L EE RL+ A + X A +A+A E+ +G +E RD AALRKE+SE+T +LEAALE KAT A S MS L+AEMRSVI+SL+
Sbjct: 1 MEEDRPWVPSSDNAGSGAGRASPLNDSFKDDIQAIGRAVERLRDGFAGTDSSSPAPAPGHDSAQWDGGLSSSMLASGPGDESGRPSSGDGVGGQP--TLGNNSRPLVRELLPARAGVSGIFAEGDTSVLERTR-YSDGRLSLRELRSADKSRTHYSDERARPRPDDAGDQSTTAVAAAAEGGGEMAGTGTQVSDQEGLFNKGGSSGSTHSGSTSRRRANDVGGPSSPGGAQREQSLVTPVLTPDVGEKDDGRGPGARGETQAVGLLRLRGDREPSLPTAVSRTASAEPLLLLSPLIRSSTSASVLGSGDGAWESFRREHSASGDNSSSSGDAGTAVAGTEDGMP-----AAXXXXXXAESGPLFELRDALRSREEDLLRLKRDVSVVATSARGFRHLSASLGSGNVERSS-----SFSFQRSRGHGKDASGANTDDSDLPSGNGSAFRGGGSDGSRAGGAGVDKINEEAFRPHHGGAVG---GVLLRRQPADSALPGTALSFRTAATPG------RPSDNELASSRRLXXXXXXQQGSTATVSKGNAIIAASGSPLVASAHEGLQRMRAVLEQRALEVGRAHDDSKEMANSLNDVSARLRRSERKRNAQAAELAKX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSKDATAARXXXXXXXXXXGSLAETAQRXXXX--XXXXXRLRDRLETATGEXXXXXXXXXXXXXXXXASDKETRRARERAAAAEEEAGAATAXXXXXXXXXXXXXXXXAERAQREAEASAELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXAEAEAGRLHSVRRERDSSVAE----------------------VANLTAALVLAREGQEAERGRFDRESKRAAALGEELVASEARRKVQEEEISLVRKQVSRLDAKIEGDMSRVKANSDATARATAAGAEREANSLRASXXXXXXXXXXXXXXXXXXXXNADASLKAELAAAREAEAELAASEARAKXXXXR---------------------------------------AARAAQLDKDTXXXXXXXXXXXXXXXXXXXXXXLSELEHAATSAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFVRARKDLEGRLALAVAEAAESRAEAQ------------------------RLKRKLQAVSDREDGGTPAGLG-VGFSARTKRRNGGGGTRGKDDDYLFGLDGDRPHREGLQEALRESCGVMERIASALSAAAADRRTSRRPGSDGGSELDDPRWAFGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------RAFSVDSNRSGVGD-------ADLRQDGFGDCAESGGEGH---DLRRVVSRAEVREVAERLRFEAARLLGVRKEERKAAGDTVASLRRDLRDSESREAEVTARLEESRELSREQTGFVEGVWKERHRLXXXXXXXXXXXERLRASEDAARTAATVLDGKVADLSAALRQEQARAKREAEAAVAAEARDAMEALRQQLDDLRK-----------------------------------------------------------------------EGEFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREFKGALEALKLSQELLLRIHRQRQNNAVADPTDTATPTTHPAAAPAPKHHHQPDAATRESHPGAPDETPSAAPADLAATAGERPTSAATSSLSTDAHVHELAAQASKLRGMSGNVKRLLQLAAGEVQGALEDTRDSLGVAGAAAA-----TVGTQTAEGLDGPTRGEVECLEQQVVRMKAEGQAREAEKLRLSGELSAAVGELTKIQGLLEDKMSEAVVLEAHVARLETERNEAREAASAAANDGLA---EAEASLSDTQARLEAALATQRELRSRCAELSLASGAFASEVAKQKEERARSQERARLAT----AELRDLSAKFSRASKTAAADAAAERDRLERELVATRAEARDIDTDVAQVLDALASSEKERRRLEAELHRQTK---AARVQRQQGE---------------REALEVESGRKE----------------RETERREKVERECKVLEARTGDLEAAL---AAELKKAA----ETGAVHEREVAGLREEATRLRESLQAEMERERGKWQAEQKAMXEEIMLAREDDKASWIAKATEQGYEKGKAEEHHRTARSREREQRDLAALRKELSESTXXXXXXXXXXXXXXXXXXXXXXXXXQLEAALE--KATG----------ADRSSMSHLKAEMRSVITSLD 2019 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.913.1 >prot_C-linearis_contig104.913.1 ID=prot_C-linearis_contig104.913.1|Name=mRNA_C-linearis_contig104.913.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=2482bp MEEGGPSMPAGSSGRGQILPNPATDSFKDDIQAIGRAVERLRDGFVGADSback to top mRNA from alignment at C-linearis_contig104:472041..485351+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.913.1 ID=mRNA_C-linearis_contig104.913.1|Name=mRNA_C-linearis_contig104.913.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=13311bp|location=Sequence derived from alignment at C-linearis_contig104:472041..485351+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:472041..485351+ >mRNA_C-linearis_contig104.913.1 ID=mRNA_C-linearis_contig104.913.1|Name=mRNA_C-linearis_contig104.913.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=14892bp|location=Sequence derived from alignment at C-linearis_contig104:472041..485351+ (Chordaria linearis ClinC8C monoicous)back to top |