mRNA_C-linearis_contig104.911.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.911.1
Unique NamemRNA_C-linearis_contig104.911.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: D8LEF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF6_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.620e-46
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 1 
Query:    4 MGYNELGNDWQHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRKRNTRK 249
            MGY +LGNDWQHSLVLATGSADGSIHVFDLSKGQGDE+QTL GHRDRVYSADFHPTEPKLVS SADKTV IWEPNRKRN+RK
Sbjct:    1 MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 82
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BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.280e-41
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 1 
Query:    4 MGYNELGNDWQHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRKRNTRK 249
            MGY +LGNDWQHSLVLATGSADGSIHVFDLSKGQGDE+QTLRGHRDRVYS DFHPTEPKLVS SADKTV IWEPNRKRN+RK
Sbjct:  520 MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLRGHRDRVYSTDFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 601
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BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A835Z281_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z281_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.420e-32
Identity = 57/85 (67.06%), Postives = 71/85 (83.53%), Query Frame = 1 
Query:    1 GMGYNELGNDWQHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNR--KRNTRK 249
            G+GY + G DW HSLVLATGSADG+I+ FD+SKG+G ++QTLRGH DRVY+  FHPTEP+LVS SAD+TVRIW P++  +RN RK
Sbjct:   40 GIGYEDSGKDWAHSLVLATGSADGNIYTFDMSKGEGGDLQTLRGHNDRVYAVHFHPTEPRLVSGSADQTVRIWGPSKGGRRNGRK 124
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BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A8J4PPE8_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PPE8_9MYCE)

HSP 1 Score: 89.7 bits (221), Expect = 1.650e-15
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:   25 NDWQHSLVLATGSADGSIHVFD--LSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRK 234
            ND   S++LATGS+D + ++FD  LSK  G  +Q L GH DRVYS  FHP+EP L SCSAD T+R+W P +K
Sbjct:  446 NDINQSVLLATGSSDYNAYIFDIGLSKQSGRLLQKLEGHTDRVYSVKFHPSEPILASCSADSTIRLWTPKKK 517
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BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A8H7Q4N1_MORIS (GED domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q4N1_MORIS)

HSP 1 Score: 88.2 bits (217), Expect = 4.810e-15
Identity = 34/75 (45.33%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:   34 QHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRKRNTRK*VV 258
            + S++LATGS+D  ++++++ +   + MQ L GH DRVY+A+FHPTEP L SCSAD T+++W P   R  +K ++
Sbjct:  422 EKSVLLATGSSDPYVYLYNIGENTAELMQRLEGHTDRVYAANFHPTEPILASCSADYTIKVWGPGAPRGKKKGII 496
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BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: R7QRT1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRT1_CHOCR)

HSP 1 Score: 88.2 bits (217), Expect = 5.720e-15
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:   19 LGNDWQHSLVLATGSADGSIHVFDLS--KGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNR 231
            +G   Q+SL+LA+GSADG+I +FD+    G G  +QTL GH+DRVY  DFHP EP L SCSAD  ++IW+  R
Sbjct:  482 IGGPIQNSLILASGSADGNICLFDVGGRPGTGALLQTLEGHKDRVYGVDFHPNEPILASCSADCGIKIWQSFR 554
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BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A2V3IL28_9FLOR (WD repeat-containing protein 5B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL28_9FLOR)

HSP 1 Score: 85.9 bits (211), Expect = 3.220e-14
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:   19 LGNDWQHSLVLATGSADGSIHVFDL--SKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIW 219
            +G+  + SLVLA+GSADG+++VFD+  S G G  +QTL GH+D  YS DFHP EP L SCSAD  + IW
Sbjct:  484 IGDAIESSLVLASGSADGNVYVFDVGGSAGTGTLVQTLIGHKDIAYSVDFHPCEPILASCSADSKINIW 552
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BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A168T094_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168T094_ABSGL)

HSP 1 Score: 80.5 bits (197), Expect = 1.590e-12
Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:   34 QHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRK 234
            + S++LATGSAD  ++++++ + + + MQ + GH DRVYS +FHPTEP L S SAD TV+IW P+ K
Sbjct:  439 EKSVLLATGSADPYVYLYNVGEDRSELMQRMEGHTDRVYSVNFHPTEPILASGSADFTVKIWGPSFK 505
[Close]
BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: T0QW05_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QW05_SAPDV)

HSP 1 Score: 77.4 bits (189), Expect = 1.500e-11
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:    4 MGYN--ELGNDWQHSLVLATGSADGSIHVFDLS-------KGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRKR 237
            +GY   EL       ++LATGSAD +I++ D++        G    +Q L GH DRVYS DFHP+EP L S SAD TV+IW P   R
Sbjct:  407 LGYQDRELQEKPDEVMLLATGSADNTIYLHDVTCRRGYGLNGSTSLLQRLEGHTDRVYSVDFHPSEPILASASADFTVKIWLPRTSR 493
[Close]
BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A433D2F6_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433D2F6_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 4.410e-11
Identity = 33/69 (47.83%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:   34 QHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRKRN 240
            Q   V + G     I  F  ++   + MQ L GH DRVY+  FHPTEP L SCSAD TV+IW P +K+N
Sbjct:  127 QRGRVFSLGGGTNQIK-FTPNQNSAELMQRLEGHTDRVYAVHFHPTEPILASCSADFTVKIWGPTKKKN 194
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEF6_ECTSI1.620e-4691.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNQ7_9PHAE1.280e-4191.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z281_9STRA1.420e-3267.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J4PPE8_9MYCE1.650e-1555.56Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A8H7Q4N1_MORIS4.810e-1545.33GED domain-containing protein n=1 Tax=Mortierella ... [more]
R7QRT1_CHOCR5.720e-1554.79Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3IL28_9FLOR3.220e-1456.52WD repeat-containing protein 5B n=1 Tax=Gracilario... [more]
A0A168T094_ABSGL1.590e-1250.75Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
T0QW05_SAPDV1.500e-1145.98Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A433D2F6_9FUNG4.410e-1147.83Uncharacterized protein n=1 Tax=Jimgerdemannia fla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:455451..457389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue4.4e-15
Seed eggNOG ortholog5786.XP_003291002.1
KEGG koko:K14963
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs3XD7W@554915,KOG0266@1,KOG0266@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-00_002100.1
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons2
Model size1399
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.911.1prot_C-linearis_contig104.911.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 455454..456242 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927388.6406484-UTR-C-linearis_contig104:455450..4554531622927388.6406484-UTR-C-linearis_contig104:455450..455453Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 455451..455453 +
1690879670.9467857-UTR-C-linearis_contig104:455450..4554531690879670.9467857-UTR-C-linearis_contig104:455450..455453Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 455451..455453 +
1622927388.7155652-UTR-C-linearis_contig104:456242..4573891622927388.7155652-UTR-C-linearis_contig104:456242..457389Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 456243..457389 +
1690879670.9890325-UTR-C-linearis_contig104:456242..4573891690879670.9890325-UTR-C-linearis_contig104:456242..457389Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 456243..457389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927388.654371-CDS-C-linearis_contig104:455453..4555551622927388.654371-CDS-C-linearis_contig104:455453..455555Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 455454..455555 +
1690879670.962449-CDS-C-linearis_contig104:455453..4555551690879670.962449-CDS-C-linearis_contig104:455453..455555Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 455454..455555 +
1622927388.7012703-CDS-C-linearis_contig104:456095..4562421622927388.7012703-CDS-C-linearis_contig104:456095..456242Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 456096..456242 +
1690879670.9779367-CDS-C-linearis_contig104:456095..4562421690879670.9779367-CDS-C-linearis_contig104:456095..456242Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 456096..456242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.911.1

>prot_C-linearis_contig104.911.1 ID=prot_C-linearis_contig104.911.1|Name=mRNA_C-linearis_contig104.911.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=83bp
MGYNELGNDWQHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYS
ADFHPTEPKLVSCSADKTVRIWEPNRKRNTRK*
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mRNA from alignment at C-linearis_contig104:455451..457389+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.911.1 ID=mRNA_C-linearis_contig104.911.1|Name=mRNA_C-linearis_contig104.911.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1939bp|location=Sequence derived from alignment at C-linearis_contig104:455451..457389+ (Chordaria linearis ClinC8C monoicous)
GGGATGGGATACAACGAGCTCGGGAACGACTGGCAGCACTCGTTGGTGTT
GGCCACGGGCAGCGCGGACGGCAGCATTCACGTCTTCGACCTCTCCAAAG
GGCAGGTCAGTCGTTTTGTTTTATTCTTCTCGTAGCGTCGCTCAGCTCTG
GGGTACCGGGGTTTTGTCCTCCTCCCTCTGTTTTTCGTTTTTTTCTCTTC
TATGTAGGCTTGGAGGCCGGGCGGGCGGGGCATACAGAAGAGGGAGACAC
GGCGCTCGTTTTCGCCTCTCACCTTTCTCTCATTGGCTCGCTCTGGATGG
ATCCACAGTCTCACGTTCAGGGTGTCAGGCTGTGGGACGGCAGGCACGGG
AGAGGTGGGTGCTGGAAGCGACAGCGATCCTGTCCCGTCCCGGCGTGCCC
CGGCGTGCCCCGGCGTGCCCCGGCCTGTCCCGCCTTGTTCTCTTCCATAG
CACTCATTTTTCCCTGAATTCTCTGACAGCGCATTCTCTTCTTGCCCACC
TCCTCCTGCACCTTCTCACCGACGCTACCGTTCCTGCCCCATCCGCGCGT
CTTCTCGCGCTGACCCGCCCCGCCCCGTCTTGCAATGGCGACGGCCACCG
ACAACTGACAACTGACAACCATGGTGTGGGGGTGCCGGCCAACAGGGAGA
CGAGATGCAGACGCTGCGCGGGCATCGAGACCGGGTGTACTCCGCCGACT
TCCACCCCACGGAACCGAAGCTCGTTTCCTGCAGCGCGGACAAGACGGTG
CGGATATGGGAGCCCAACAGGAAGAGGAACACGCGGAAGTAGGTAGTAAA
CGGTCGCGGTGTCTGGTGTCTGGTGGACACGGAAGGGCAAAGAGAAGCTG
GTATCACGTGTGTGTAAGATATCTGTGTTGTGTGTGTAGTTCGTATGTGT
GTAAAGTATGTTCTTGTCGAAGGTTTTTGTTGGGTCAGTCAGCCTCTTAT
CGCCGACCACCGCCGTATGATGTTTGTGAAAGCCGGATTGCTCGTGGCGG
GATATCTATCCTGTGCGCGATCTGTCGCTCAAAGAAGGTGGGTACCCACA
ATCCAGCCTAAAACCACACACAAGGCGAAGCACGGGGCAGTATGGGGTGG
AGGGAAGAAATGATTTCTGATGTAGGATCGCTGTTTTTCTCTCATGCACA
ACGCGACCTGCGTACCGCTCTGCTGCCGGCGTAAAGATATTAGACTATTG
AAGCTGGTGGTATAAAAGACTAGTAGTTATTTGTAGGTTAAGGCCCGGGT
GCCGATTTTGTCCGCGATTTGTAGAAGGAGGGACACACGAGGGAGGTCGT
TGTGGTTAAAAACGTGAGCGAGAGTTTCCCTGTAGTCTGTCTGGCCTGGC
AGGCAATCCTCGGAGTGAGAGAAGCAGGAGGGCGAAGGAGTGAGACCTGG
TGAGGCATGCATGGCGAGGCGTTGCTCCTCCCTCGTCAGAGCGGCAGGGG
TGTGCAGAGTGGGGGGAGAAGTTGTTGTGAGACGTTTTTTGTGGGAGACG
TTCCGTGTGTTTTTGTTTCCGTCGAGACCGTTTTTGCTGTCTAAAGTGTA
GCAGCAACGACTGCTGTTGTTTTGTTGCTTTTCTTTCCGACTTCAGCCCT
TGTTTGTCAGCAGAGTTTTCTTGCGCGTTTTTTGGAAGAGGTATGATGCG
GGAAGCCGAAAGGAAAGGTTGGTGGTGGCCGCGTCGACGAACAAGGCGAA
GGTCCTTTTTTGGATTCGTTGCGTCGCCGGCCCTGATTGTAAATTTTGAT
TTTGGTTGAGATAAGTTGCTGTTTTTTGAAAAACATTTCGCGACTTGTAG
CTACAGTAGGGCTGCTTGCTGACGCAAATACGTAATACTCCGACGAAGAA
TGCGTGGGTTCACTGGTTGTGTTCATTCTTGCGAGACTCGGTCGACTAAA
TAGATCAAGACCTCGTGTTGCAACTCTCGTGGCGCCCCC
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Coding sequence (CDS) from alignment at C-linearis_contig104:455451..457389+

>mRNA_C-linearis_contig104.911.1 ID=mRNA_C-linearis_contig104.911.1|Name=mRNA_C-linearis_contig104.911.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at C-linearis_contig104:455451..457389+ (Chordaria linearis ClinC8C monoicous)
ATGGGATACAACGAGCTCGGGAACGACTGGCAGCACTCGTTGGTGTTGGC
CACGGGCAGCGCGGACGGCAGCATTCACGTCTTCGACCTCTCCAAAGGGC
AGATGGGATACAACGAGCTCGGGAACGACTGGCAGCACTCGTTGGTGTTG
GCCACGGGCAGCGCGGACGGCAGCATTCACGTCTTCGACCTCTCCAAAGG
GCAGGGAGACGAGATGCAGACGCTGCGCGGGCATCGAGACCGGGTGTACT
CCGCCGACTTCCACCCCACGGAACCGAAGCTCGTTTCCTGCAGCGCGGAC
AAGACGGTGCGGATATGGGAGCCCAACAGGAAGAGGAACACGCGGAAGTA
GGGAGACGAGATGCAGACGCTGCGCGGGCATCGAGACCGGGTGTACTCCG
CCGACTTCCACCCCACGGAACCGAAGCTCGTTTCCTGCAGCGCGGACAAG
ACGGTGCGGATATGGGAGCCCAACAGGAAGAGGAACACGCGGAAGTAG
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