mRNA_C-linearis_contig104.903.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.903.1
Unique NamemRNA_C-linearis_contig104.903.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: D7FIK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK1_ECTSI)

HSP 1 Score: 378 bits (971), Expect = 3.920e-125
Identity = 224/278 (80.58%), Postives = 241/278 (86.69%), Query Frame = 1
Query:  382 YVILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDXXXXXXXXXXXXXXXXXXXXXX-GGIATVIAVVLISIYSKRALNKVLEEDRLAHEAEELEAAGEAGDGLGGHSVAMDQSQQDGKRPAVVEHAIRVPV 1212
            YVILDYTVPGLGFVAD L SFL+WVE+NPGLGA+AFA+VYVFTTV FIPGSLLTLGAGLVFGRALGTGLG+LVGSLAVLAGAT+G ILAFLLGRFVLQ+QAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNY+MGVT V FRDY +GCVG IPGTVAFVFIGTTASGLLGD    XXXXXXXXX          GGIATVIAVVLISIY+KRALNKVLEEDR+  EA  LE   E+G+G   +   M+QS QDG RPAVVEHA+R+PV
Sbjct:   57 YVILDYTVPGLGFVADTLTSFLEWVEDNPGLGALAFALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGLLGDDSEEXXXXXXXXXGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRVEQEA--LEMGLESGNGGMNN---MEQSAQDGARPAVVEHAVRMPV 329          
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: A0A7S2Y1P9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P9_9STRA)

HSP 1 Score: 259 bits (663), Expect = 3.870e-79
Identity = 150/263 (57.03%), Postives = 189/263 (71.86%), Query Frame = 1
Query:  325 KQQKLIKAGVLFTLLLIIVYVILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDXXXXXXXXXXXXXXXXXXXXXX------------GGIATVIAVVLISIYSKRALNKVLEEDRL 1077
            K++K+ K  +   L+ +I+YVI+DY+VP LG V  VL  FL WVE+NP  G  AFA VY+F TVAFIPGSLLTLGAGLVFGRALG G GV +GS AV+ GA+IG I+AF+LGR+VLQ  AQ LFNKFK+++AV++AI+SQGLKL +LLRLSPVVPF+AFNYIMG+TA+  +DY +GC+G+IPGTVA+VFIG++ASG+ GD                                  G IATVIAV LIS Y+K+ALN++L E  L
Sbjct:   20 KKEKIRKLCLGLVLVGLIIYVIVDYSVPSLGNVNIVLSDFLAWVEDNPIEGVFAFACVYMFCTVAFIPGSLLTLGAGLVFGRALGIGRGVALGSFAVILGASIGAIIAFILGRYVLQDTAQVLFNKFKIMRAVDKAIESQGLKLCLLLRLSPVVPFNAFNYIMGLTAISLKDYTIGCLGIIPGTVAYVFIGSSASGI-GDMKGNDEEQNDNTKDADGEESSSDNDTVFLIVIIVGAIATVIAVFLISWYAKKALNRILNEVEL 281          
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: A0A7S3YEX9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEX9_HETAK)

HSP 1 Score: 248 bits (633), Expect = 9.340e-75
Identity = 167/287 (58.19%), Postives = 200/287 (69.69%), Query Frame = 1
Query:  244 LTSSLHDYGATANTDGSDDGSVDAPPT--KQQKLIKAGVLFTLLLIIVYVILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDXXXXXXXXXXXXXXXXXXXXXX------------GGIATVIAVVLISIYSKRALNKVL 1062
            LT  + DY     T GS  GS+    T  ++ KLIK G+L  L+ II+YV+LDYT+P LG V  +L SFL WVEE+PG G +AFA VYV TTV FIPGS+LTLGAGLVFGRAL                      +AFLLGR+VLQ  AQ LFNKF VLKAV++AI+++GL+LVILLRLSPV+PFSAFNY+MG+T V FR YVLGCVGM+PGTVA+VFIGT+A+GLLGD         XXXXXXXXXXXXX            G  ATV+AVVLI++ S+RAL +VL
Sbjct:   18 LTPGMEDY-KKETTKGS--GSLGGEKTGDRKNKLIKFGLLSLLVGIIIYVVLDYTLPSLGHVNRILTSFLLWVEEHPGEGVVAFASVYVLTTVLFIPGSILTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXXIAFLLGRYVLQDSAQKLFNKFSVLKAVDKAIENEGLRLVILLRLSPVIPFSAFNYVMGLTRVMFRQYVLGCVGMLPGTVAYVFIGTSAAGLLGDADDGSQESEXXXXXXXXXXXXXXXRLVNIVVLVVGAAATVLAVVLITVASRRALRRVL 301          
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: A0A7S4JVV3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JVV3_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.750e-56
Identity = 118/281 (41.99%), Postives = 174/281 (61.92%), Query Frame = 1
Query:  325 KQQKLIKAGVLFTLLLIIVYVILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDXXXXXXXXXXXXXXXXXXXXXXGGIATVIAVVLISIYSKRALNKVLEEDRLAHEAEELEAAGEAGDGLGGHSVAMDQSQQD 1167
            ++ ++ K  +   L+  IV+VI+D T  G  ++ D +Q+FL+W+EENP  G   F  VYV  TV F+PG +LTLGAG VF  A GTGLG+ VG+++V  GA++G +LAFL+ R++L++ A GL  KF + +A+++A++ +GLK++ILLRLSPV+PF+A NY+ GVTAV F+DY L    M+PGT+ +VF+G +A  L                         G +  ++AV L S Y+K+ LNK+L+++    EA E  A GE   G GG S   D    D
Sbjct:   12 RRSRIKKLVLALVLIGFIVFVIIDSTTNG--YIKDGIQTFLRWIEENPIEGFFMFMGVYVLATVLFVPGLILTLGAGYVFSNAFGTGLGLFVGTISVFVGASLGSMLAFLISRYILREWAVGLTEKFPIFRAIDQALEEKGLKIIILLRLSPVIPFNALNYVCGVTAVSFKDYSLALFAMLPGTILYVFLGASAQSLA------TIGSSTDSKALTISTVVVGVVLGIVAVALSSRYAKKELNKILDQEE---EANERIAGGE---GEGGKSQDRDNFVHD 278          
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: A0A6H5JID7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID7_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 1.940e-55
Identity = 110/257 (42.80%), Postives = 162/257 (63.04%), Query Frame = 1
Query:  433 LQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDXXXXXXXXXXXXXXXXXXXXXX-GGIATVIAVVLISIYSKRALNKVLEEDRLAHEAEELEAAG--------EAGDGLGGHSVAMDQSQQDGKR 1176
            L++  +W+E+NP  G + FA+++  +T+ F+PG LLT+GAG+ FGRALG G GVL GS+AVL GA + C++AF LGR+VL +QAQ    ++++L AVN AI+  G+K++ILLRLSP+VPFS FN+I G+T V  RDY+LG VG++PGT+AFV+IG + +G + +                       G +A V+A+V ++IY++RAL + L E  L   A++ E A         E G   G    A+D     G+R
Sbjct:   93 LETSFEWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEQEAMNSGEADRTECIIRMATLIVGAVAAVLAIVAVTIYARRALKQALVESELDANADKEEKAEHEGSATDVECGSSPGEFKEAVDSGGSGGER 349          
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: D7G9F3_ECTSI (Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F3_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 8.680e-50
Identity = 95/207 (45.89%), Postives = 145/207 (70.05%), Query Frame = 1
Query:  304 SVDAPPTKQQKLIKAGVLFTLLLIIVYVILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGD 924
            +V+    +  + IK  ++F ++ ++V  I+D        V   L++   W+E+NP  G + FA+++  +T+ F+PG LLT+GAG+ FGRALG G GVL GS+AVL GA + C++AF LGR+VL +QAQ    ++++L AVN AI+  G+K++ILLRLSP+VPFS FN+I G+T V  RDY+LG VG++PGT+AFV+IG + +G + +
Sbjct:   52 AVEKDNERVNQRIKRIMMFVVVALVVSAIVDIACHD--NVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNE 256          
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: A0A7S2A6Q3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6Q3_TRICV)

HSP 1 Score: 181 bits (460), Expect = 4.330e-49
Identity = 104/256 (40.62%), Postives = 157/256 (61.33%), Query Frame = 1
Query:  307 VDAPPTKQQKLIKAGVLFTLLLIIVYVILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDXXXXXXXXXXXXXXXXXXXXXXGGIATVIAVVLISIYSKRALNKVLEEDR 1074
            V A   K+  L K  V   L+ +IV++I+D    G  FV   ++  L+W+EENP  G   F  VY   TV F+PGSLLTLG+G VF  + G G GVL+ +LAV  GAT+G ++AF+LGR++L+   + L  K+ V +A+++A++ +GL+++ILLRLSP++PF+A NYI GVT+V F+ Y      ++PGT+ FVF+G +A  L+                        G +  VIA+ L S Y+K+ LNK+LE+++
Sbjct:   34 VKACTDKRALLNKIIVGLVLVGLIVFIIVDSVTHG--FVKGAIEGLLQWIEENPIRGLFVFMAVYFVATVLFVPGSLLTLGSGFVFAESFGLGFGVLLATLAVFVGATLGALVAFILGRYLLRDWVENLTKKYNVFRAIDKALEEKGLRIMILLRLSPIIPFNALNYICGVTSVSFKHYAWANFAILPGTILFVFLGASAGSLVDSGNGGDTPVVTIATIVV------GVVFGVIAIALTSRYAKKELNKILEQEK 281          
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: W7TSR1_9STRA (SNARE associated Golgi protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSR1_9STRA)

HSP 1 Score: 181 bits (458), Expect = 9.890e-49
Identity = 106/260 (40.77%), Postives = 161/260 (61.92%), Query Frame = 1
Query:  340 IKAGVLFTLLLIIVYVILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKS-QGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDXXXXXXXXXXXXXXXXXXXXXXGGIATVIAVVLISIYSKRALNKVLEEDRLAH-EAEELEAAGE 1113
            ++ G+L   L++++ + +DY+  G   VA VL +FL+WV  +P  GA+AFA VY  + V F+PG+ LTLG G +FG+ALG G G +  SLAV  GA+ G + AF LGR++L + AQ   N++ +L+A++ ++   +GLK+V+LLRLSP+VPF+A NY+M VT+V  + Y LG VGM+P  VA+ F+GTTA GL  +                      G +A V AV ++S +++  L K+ +E   A  E  ++E  GE
Sbjct:   50 LQGGILVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAGGESSVERGVKIAMYVV----GAVALVAAVGVLSRFAREELRKIQDEGEGARGEGRDVEGGGE 305          
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: A0A0G4EY60_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EY60_VITBC)

HSP 1 Score: 181 bits (458), Expect = 1.130e-48
Identity = 118/284 (41.55%), Postives = 166/284 (58.45%), Query Frame = 1
Query:  352 VLFTLLLIIVYVILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDXXXXXXXXXXXXXXXXXXXXXXGGIATVIAVVLISIYSKRALNKVLEEDRL-AHEAEELEAAGEAGDGLGGHSV----AMDQSQQDGKRPAVV 1188
            V   ++ IIVY+I+D T      VA+ L  F +WV++NP  G +A+  VY+  TVAFIPGS+LTLGAG  F  A G G G+  G  AVL GA +G  LAF  GRF+ +   QGL +KFKV++A+++  ++QGLKL ILLRLSPVVPFSAFNYIMG T  ++RDY +G +G+IPGT  +V+IG   +                           G +AT IAV +++ ++++AL ++ E++   A +A+  E     G  L G +V    +  Q QQ     A V
Sbjct:   58 VFLVIIAIIVYIIIDSTTGQR--VAEGLDIFKEWVQDNPATGILAYMAVYMVCTVAFIPGSILTLGAGFTFVCAFGNGPGMAAGIGAVLVGAFVGAQLAFFCGRFLFKSWVQGLTDKFKVMRAIDKVFETQGLKLNILLRLSPVVPFSAFNYIMGGTRTRYRDYAIGTLGIIPGTALYVYIGAIPA----FAGACSGKAEGSGHWSQWVFLAVGLVATFIAVFIVTWFARKALREITEKEAAEASKADGKEGVETPGPDLDGATVVTVTSSTQQQQQANGQAYV 335          
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: A0A6U4ITL6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U4ITL6_9STRA)

HSP 1 Score: 179 bits (455), Expect = 8.840e-48
Identity = 131/291 (45.02%), Postives = 186/291 (63.92%), Query Frame = 1
Query:  310 DAPPTKQQKLIKAGVLFTLLL-IIVYVILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDXXXXXXXXXXXXXXXXXXXXXXGGIATVIAVVLISIYSKRALNKVLEEDRLAHEAEELEAAGEAGDGLGGHSVAMDQSQQDGKRP 1179
            +A  T+++  +K  ++  +LL I++Y+I+D T     +VA  +Q FLKW E+NP  G  AF  VY   TV F+PGS+LTLGAG VF  A G G GVL+ ++AV  GA  G + AFLLGR++L+    G  +K+K+ KA+++A+++ G +++ LLRLSPV+PF+A NYI GVTA+ F  Y    + ++PGT+ F F+G TA G L D    XXXXXXXXXXXXXXXX       V+A+V++S Y+K+ LNK+LEE       E+     E GDG G       +  +DG+ P
Sbjct:   67 EANATRKKARVKKIIIGLILLGIVIYIIVDSTTNR--YVAQGIQIFLKWFEDNPVAGLFAFMGVYFLATVMFVPGSILTLGAGFVFANAFGLGWGVLLATVAVFCGAVAGDLTAFLLGRYLLRGWVLGWTDKYKIFKAIDKALETNGFRIMSLLRLSPVIPFNAINYIAGVTAISFSAYAWANLFILPGTILFCFLGATA-GSLADSGASXXXXXXXXXXXXXXXXFG-----VLAIVVVSFYAKKELNKILEEQN----EEDSSTEPEGGDG-GDIEAGPAEEVKDGESP 344          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIK1_ECTSI3.920e-12580.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2Y1P9_9STRA3.870e-7957.03Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3YEX9_HETAK9.340e-7558.19Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4JVV3_9STRA1.750e-5641.99Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6H5JID7_9PHAE1.940e-5542.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9F3_ECTSI8.680e-5045.89Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectoc... [more]
A0A7S2A6Q3_TRICV4.330e-4940.63Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
W7TSR1_9STRA9.890e-4940.77SNARE associated Golgi protein n=2 Tax=Nannochloro... [more]
A0A0G4EY60_VITBC1.130e-4841.55Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A6U4ITL6_9STRA8.840e-4845.02Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:408883..413303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score375.6
Seed ortholog evalue2.4e-101
Seed eggNOG ortholog2880.D7FIK1
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
Hectar predicted targeting categoryother localisation
EggNOG free text desc.canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsCOG0398@1,KOG3140@2759
Ec32 ortholog descriptionMajor facilitator superfamily domain
Ec32 orthologEc-27_000060.1
EC1.14.13.9
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons4
Model size1604
Cds size981
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.903.1prot_C-linearis_contig104.903.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 409272..413069 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927387.764616-UTR-C-linearis_contig104:408882..4092711622927387.764616-UTR-C-linearis_contig104:408882..409271Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 408883..409271 -
1690879670.2554328-UTR-C-linearis_contig104:408882..4092711690879670.2554328-UTR-C-linearis_contig104:408882..409271Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 408883..409271 -
1622927387.816657-UTR-C-linearis_contig104:413069..4133031622927387.816657-UTR-C-linearis_contig104:413069..413303Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 413070..413303 -
1690879670.311268-UTR-C-linearis_contig104:413069..4133031690879670.311268-UTR-C-linearis_contig104:413069..413303Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 413070..413303 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927387.7744124-CDS-C-linearis_contig104:409271..4096741622927387.7744124-CDS-C-linearis_contig104:409271..409674Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 409272..409674 -
1690879670.2733762-CDS-C-linearis_contig104:409271..4096741690879670.2733762-CDS-C-linearis_contig104:409271..409674Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 409272..409674 -
1622927387.7833962-CDS-C-linearis_contig104:410081..4102751622927387.7833962-CDS-C-linearis_contig104:410081..410275Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 410082..410275 -
1690879670.2814343-CDS-C-linearis_contig104:410081..4102751690879670.2814343-CDS-C-linearis_contig104:410081..410275Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 410082..410275 -
1622927387.7936904-CDS-C-linearis_contig104:410815..4110311622927387.7936904-CDS-C-linearis_contig104:410815..411031Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 410816..411031 -
1690879670.289549-CDS-C-linearis_contig104:410815..4110311690879670.289549-CDS-C-linearis_contig104:410815..411031Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 410816..411031 -
1622927387.8072898-CDS-C-linearis_contig104:412901..4130691622927387.8072898-CDS-C-linearis_contig104:412901..413069Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 412902..413069 -
1690879670.299859-CDS-C-linearis_contig104:412901..4130691690879670.299859-CDS-C-linearis_contig104:412901..413069Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 412902..413069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.903.1

>prot_C-linearis_contig104.903.1 ID=prot_C-linearis_contig104.903.1|Name=mRNA_C-linearis_contig104.903.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=327bp
MDDLTSSLHDYGATANTDGSDDGSVDAPPTKQQKLIKAGVLFTLLLIIVY
VILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGS
LLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQA
QGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKF
RDYVLGCVGMIPGTVAFVFIGTTASGLLGDDDEQEESEDDGDSMVQLIVL
IVGGIATVIAVVLISIYSKRALNKVLEEDRLAHEAEELEAAGEAGDGLGG
HSVAMDQSQQDGKRPAVVEHAIRVPV*
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mRNA from alignment at C-linearis_contig104:408883..413303-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.903.1 ID=mRNA_C-linearis_contig104.903.1|Name=mRNA_C-linearis_contig104.903.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4421bp|location=Sequence derived from alignment at C-linearis_contig104:408883..413303- (Chordaria linearis ClinC8C monoicous)
TCTTGCGGAGTAAACGTCCCGATGTCCCGGCCTTTATCTCGGTTACGCCC CCGGCCAGCCTCTCTCACTCTCTCACTCTTCCTTCTCCCCTTCCTCTCTC TCGCTCGCGCGTCCAAGTCGAAGCGTACTCTCCCGACTGACACCACCACA CTCGAGCCAGGCTTCACCACTCGCCTCTCGGCTACCCAAGCACACCGGTC CGGTGGGGTTGAATGATAAGCAGCGACAGAGGGCATGGATGACTTGACTT CTTCTCTCCACGATTACGGTGCCACCGCCAACACGGACGGCAGCGATGAT GGGAGCGTGGATGCACCGCCGACCAAGCAGCAGAAGCTCATCAAAGCTGG AGTGCTCTTCACGCTCTTGTTGATCATCGTCTACGTGATCCTGGACTACA CGGTGAGCGACTACGAACCGTTCCGTTCTTGGTCTAGTCTATCCGCGGAT GGTGGTGTGTGTCGTGGTGGGCAGAGCACTCGTGCGGCGCAGTGGGGGGG AAAGAGGAGATATTAGAGGTGGTGTGTAGGAGAGATGCCCCTGTTGTGTT TTGGCGAAGTCGCCCATCCCGGCCACGCACAGCGCTACCATTAGACTAAA CGATTCCGTCTGCAGTCAAAAAACCAGTGACGTAAGAAATCGCTTTGCAT ACACAGCAGATCCCGACACGCACAGAATATGTAGTGTCGAAAAGGTTGAG GTTTTCTTTCGGCCGCGGTGGAGTGGGAAGCTCTACGATATATGCGTCTT GTTGTGGTTGTGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTA CTTGTTTCACATTTAACTCGTTACAGAGTTGCTGATCCCTAAAATCTAGC AAGATCACAGCCCATGGCCACAAAAGTGCTAGAGCCATCAGAGAATGCTA AAGAACACGCACACGCTGTTGTTACCTAGAATGTATTTATTTACTGGGTA GCAGTTTTACTTCTTTCTTTTTTCTCTTTGTTTTTGTTTTTGTCACTGCA TCTGCGTGCGATCTATGGGGGGAGTCACTGCAGCAGTAGCACAATAGTCT AGTGCTTATTTTTTCGAGCTAACTCTTTGTTTTCTTTCTACAACTTACGA CAACACTACACGATCCACGACCAGGACTCATGAACCATCAGTCATGTTTT TTCTTTTGGTCTTAACTTGCGAAGGTATACATGTATCACCTAAATTAGCG TTCACTGTAACATTGTAACAGGGCAGAACGCGTAAAACATGCAGCAGCAA CAGCAGTGACAGCAGTAAACGCAGAGAACCGCATATCATCATACACCATT TACAGCACGTCTCGAGAGCCTGACAGCCGTTTCAAACGAACGACATCACG TTGTATAACACCCCGGGAATGGGCGGTTCTCGTCCCCGACTGGCGCGGTT ATAACCGGTAGGTTACACCAAAAGCTGATTTGCGGTTATAACCGGTAGGC TACATGGCTGAACCAAGGTTTCTGACATCCCTGCAAAAAACCTCACCTCG GGTCCTCCTCCTCGGGTCTCGGTAGACTTGCAGCACAAGAGTTACCCCGC AATGTACTGCTGCTGTCCAGCTGACAGTTGACAGACCCGGGCACCCCGAA ATGAAAAACAGAACAAGGAGCAAAGGCTGTCCACACTTGCAGATCGCCGT GTCACTGAAGAACCCTGTTATTTTGCTGAACCCTCGGGGTTCATCTATGA GATGTTAACAGCTGGATTTGGGTAATCGGCTAGACTGCGCAGCGACACGG CGATGTTCGAGCAGTTGGCGTAGTGATGCTTTAAATTTTTGCCCTCATTT GTTTTCAAGGGGCCAATTTCGTAGGTGATGGTGCGTTTCTGTATACATAT ACTTCGAAGTGTATGTAGTATACATGCCTGAAAGACGCACGTTGTTGGTG TGGCGTGAGGATACCTGTTTGAGGAACGACCATCGCCATCTGCCATCTCC CTCACGGCAAAGGGTCTGTTTGGATCGCTCGCCTGTTCAGCCTGGCGGTA CTGCTGCTGTTCAAAGTTCAAAGCCACCGATCCAAACTCATTCTCTCGGG AAACCCTATTGTATGATTCCTTTTATTTCTATGGTCTACACGAAGTACAT GTAGCCTCGGTGGTCGGGTATCCCTCTACCATAGTCTACAGCAGCAGTTA ACTTCCGGCTGTGGCAGAAGCACACAGCTCAGATCGCATGCATGCATCCC TGGTAGACACTTTGTGTTGCGTTACCGAAACCAGCCTTGTCTGATCGGTC TCCTGCCCGTGCCCGCACTCAGGTCCCTGGGCTCGGCTTCGTTGCCGACG TCCTCCAGTCTTTCCTCAAGTGGGTTGAAGAAAACCCTGGACTAGGCGCG ATCGCCTTCGCCGTGGTGTATGTCTTCACAACGGTGGCCTTTATTCCCGG GTCGCTACTCACGCTGGGCGCCGGGCTCGTGTTTGGTCGCGCGCTGGGCA CTGGTTTGGGCGTGCTGGTTGGGTCCCTGGCGGTGCTGGTGAGGATTAGT CTCCCATCATGTGCAGCAGACGCGACGTTGCAGCGGTACAGCGTAGTGGC TGCTGCAGCCGAGCCTATTCTCCTGCTTTGCGTTTTTGGGCAAACGACTG GTTTGCGAAACTTCATCAGAAGTGGGAACCAAGAGGTCGTTGTTTTTTTG TTTTGTTTCGTCGAGCAGTTTTTTTCGTGGGCCTCGGGCCTTCGTGCCCC AGACTGCAAGGTGATGCCTAGGCTCCTGCCCTTACCTCGTTTAATCCCCA AAAGATATGCCCGGGGGGGTTCCAGGGAAGAACACGGCCATGCCATGGTA GCAGTCGTCGCTGTTGCTTATGACTGCGTGCCACACCATCGTGCCTGTCA ACGAGTTTTCTTTACGGAAGATGATCGCTTTCCACCGAGGGGGCGAGGCG TCTCATAGGGTTTCGAGAATTCCAGCATTCACCCTGAATTTTTTTCCTCC CCCGGCTTTGCGCGTGTTACAAAACAACGCGGTGCTTCTCCCCATCGACG GAAATCGTGCTCGTTTCGTTTTCCACAGGCCGGTGCAACGATCGGGTGCA TCTTGGCCTTCCTGCTGGGCCGTTTCGTGCTGCAGAAACAGGCGCAGGGG CTGTTCAACAAGTTCAAGGTCCTCAAGGCTGTCAACAGGGCTATCAAGTC GCAGGGGCTGAAGCTCGTGATTCTCCTCCGCCTGTCTCCGGTCGTGCCTT TCAGCGCCTTCAACTATATTATGTGAGAACATCGACGAGGACGCTACGTT TAAGAGCTGTGAACGCCACTATGCCGAACGATTACCCATGGTGGGCATGT GTGGTGGCTGCTTTGGCGAACGGTTGGAGACGGGGCTTTTGTGCCATGCG CGATTCAAAGCGTTGGCACGGCAGTTCCATTTCCAGGCGCGTCGTGATGT CTAGTGCCAGCACTGCCTGCGGTTTCGAGGGGCCGATTTCCAGATGTCGA AAGCTTTTGTCCGCCATTGGCGACCTTCAGCCAAATATAACCCCCCCAAG CATAGCGTTGGTGCACGCGCCACACTGGCCGTATCGGGGAGGAAAAGAGC GTTTACACCTCCATTCCCCGACACGCGACTCACACTGGCGCGCCCTAACC CTCTTGTCCGGCTCTTTCTCTCTCCTCAGGGGCGTAACGGCGGTGAAGTT CCGAGACTACGTCCTGGGTTGCGTGGGCATGATCCCCGGCACGGTGGCGT TCGTCTTCATCGGCACCACGGCGTCGGGTCTGCTGGGAGACGACGACGAG CAGGAGGAGTCGGAGGACGACGGTGACTCCATGGTACAGCTCATCGTCCT CATCGTGGGGGGAATCGCTACCGTGATCGCGGTTGTGCTGATTAGCATCT ACTCCAAGCGCGCCCTGAACAAGGTGCTCGAAGAAGACAGACTCGCGCAC GAGGCGGAGGAGCTGGAAGCGGCCGGAGAAGCCGGTGATGGACTGGGTGG GCATTCGGTGGCGATGGACCAGTCTCAGCAGGACGGGAAACGGCCGGCTG TTGTGGAACACGCCATCCGCGTGCCGGTTTGAGCGAACCGGGGATAACTT GTTTGCGGTCGAATTTCTGTTGGTGTCACGCATGGACATTGACCAGAGTT TTGGAAGTATTTTACAGCAGTTGGTGATCATTTGATGGTTGCCGTGGTTT CGCTGCGTTTTTATTTTTATTTTTATTGCGACCGCCTTTGAAGGCGGGCA GCGAGAACAAACGCTATCCTCGTTGTATATTGTGGCCAGAAATTGCCAGT TTTTGTTGCCTAACCTTGTAGTTTAAGTTGGCGTTTGTTGTAGTTTCATG TTAGTTTTTTTCTCTCTCCTTTCAATGGAGGCGCTACTGTACGGTTGCAT GACGTGGTCACCGCGTCGCGAGCACTACCGGCTGCTGCAGACGACACACC ACCGGCTGCTCCTGCGAGTCA
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Coding sequence (CDS) from alignment at C-linearis_contig104:408883..413303-

>mRNA_C-linearis_contig104.903.1 ID=mRNA_C-linearis_contig104.903.1|Name=mRNA_C-linearis_contig104.903.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1962bp|location=Sequence derived from alignment at C-linearis_contig104:408883..413303- (Chordaria linearis ClinC8C monoicous)
ATGGATGACTTGACTTCTTCTCTCCACGATTACGGTGCCACCGCCAACAC
GGACGGCAGCGATGATGGGAGCGTGGATGCACCGCCGACCAAGCAGCAGA
AGCTCATCAAAGCTGGAGTGCTCTTCACGCTCTTGTTGATCATCGTCTAC
GTGATCCTGGACTACACGATGGATGACTTGACTTCTTCTCTCCACGATTA
CGGTGCCACCGCCAACACGGACGGCAGCGATGATGGGAGCGTGGATGCAC
CGCCGACCAAGCAGCAGAAGCTCATCAAAGCTGGAGTGCTCTTCACGCTC
TTGTTGATCATCGTCTACGTGATCCTGGACTACACGGTCCCTGGGCTCGG
CTTCGTTGCCGACGTCCTCCAGTCTTTCCTCAAGTGGGTTGAAGAAAACC
CTGGACTAGGCGCGATCGCCTTCGCCGTGGTGTATGTCTTCACAACGGTG
GCCTTTATTCCCGGGTCGCTACTCACGCTGGGCGCCGGGCTCGTGTTTGG
TCGCGCGCTGGGCACTGGTTTGGGCGTGCTGGTTGGGTCCCTGGCGGTGC
TGGTCCCTGGGCTCGGCTTCGTTGCCGACGTCCTCCAGTCTTTCCTCAAG
TGGGTTGAAGAAAACCCTGGACTAGGCGCGATCGCCTTCGCCGTGGTGTA
TGTCTTCACAACGGTGGCCTTTATTCCCGGGTCGCTACTCACGCTGGGCG
CCGGGCTCGTGTTTGGTCGCGCGCTGGGCACTGGTTTGGGCGTGCTGGTT
GGGTCCCTGGCGGTGCTGGCCGGTGCAACGATCGGGTGCATCTTGGCCTT
CCTGCTGGGCCGTTTCGTGCTGCAGAAACAGGCGCAGGGGCTGTTCAACA
AGTTCAAGGTCCTCAAGGCTGTCAACAGGGCTATCAAGTCGCAGGGGCTG
AAGCTCGTGATTCTCCTCCGCCTGTCTCCGGTCGTGCCTTTCAGCGCCTT
CAACTATATTATGCCGGTGCAACGATCGGGTGCATCTTGGCCTTCCTGCT
GGGCCGTTTCGTGCTGCAGAAACAGGCGCAGGGGCTGTTCAACAAGTTCA
AGGTCCTCAAGGCTGTCAACAGGGCTATCAAGTCGCAGGGGCTGAAGCTC
GTGATTCTCCTCCGCCTGTCTCCGGTCGTGCCTTTCAGCGCCTTCAACTA
TATTATGGGCGTAACGGCGGTGAAGTTCCGAGACTACGTCCTGGGTTGCG
TGGGCATGATCCCCGGCACGGTGGCGTTCGTCTTCATCGGCACCACGGCG
TCGGGTCTGCTGGGAGACGACGACGAGCAGGAGGAGTCGGAGGACGACGG
TGACTCCATGGTACAGCTCATCGTCCTCATCGTGGGGGGAATCGCTACCG
TGATCGCGGTTGTGCTGATTAGCATCTACTCCAAGCGCGCCCTGAACAAG
GTGCTCGAAGAAGACAGACTCGCGCACGAGGCGGAGGAGCTGGAAGCGGC
CGGAGAAGCCGGTGATGGACTGGGTGGGCATTCGGTGGCGATGGACCAGT
CTCAGCAGGACGGGAAACGGCCGGCTGTTGTGGAACACGCCATCCGCGTG
CCGGTTTGAGGGCGTAACGGCGGTGAAGTTCCGAGACTACGTCCTGGGTT
GCGTGGGCATGATCCCCGGCACGGTGGCGTTCGTCTTCATCGGCACCACG
GCGTCGGGTCTGCTGGGAGACGACGACGAGCAGGAGGAGTCGGAGGACGA
CGGTGACTCCATGGTACAGCTCATCGTCCTCATCGTGGGGGGAATCGCTA
CCGTGATCGCGGTTGTGCTGATTAGCATCTACTCCAAGCGCGCCCTGAAC
AAGGTGCTCGAAGAAGACAGACTCGCGCACGAGGCGGAGGAGCTGGAAGC
GGCCGGAGAAGCCGGTGATGGACTGGGTGGGCATTCGGTGGCGATGGACC
AGTCTCAGCAGGACGGGAAACGGCCGGCTGTTGTGGAACACGCCATCCGC
GTGCCGGTTTGA
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