mRNA_C-linearis_contig104.902.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.902.1
Unique NamemRNA_C-linearis_contig104.902.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: D7FIK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK1_ECTSI)

HSP 1 Score: 352 bits (903), Expect = 1.400e-114
Identity = 200/273 (73.26%), Postives = 224/273 (82.05%), Query Frame = 3
Query:  315 YVVLDYTVPGLGFVDNVLQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDGDDSTVQLIVLIVGGIATVIAVVLISIYAKRALNKVLEED-AEAESNAAQIVAGSMMTEDIEAAA--GTRPSVIEHPVRTNV 1124
            YV+LDYTVPGLGFV + L SFL+WVE+NPGLGA+AFA VY+FTTV FIPGSLLTLGAGLVFGRALGTGLG+LVGS  V   A +G I AFLLGRFVLQ+QAQGLFNKFKVLKAV+RAI++QGLKLVILLRLSPVVPFSAFNY+MGVT V FRDY +GCVG IPGTVAFVFIGTTASGLLGD  +E          TVQLIV IVGGIATVIAVVLISIYAKRALNKVLEED  E E+    + +G+    ++E +A  G RP+V+EH VR  V
Sbjct:   57 YVILDYTVPGLGFVADTLTSFLEWVEDNPGLGALAFALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGLLGDDSEEXXXXXXXXXGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRVEQEALEMGLESGNGGMNNMEQSAQDGARPAVVEHAVRMPV 329          
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: A0A7S2Y1P9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P9_9STRA)

HSP 1 Score: 284 bits (727), Expect = 2.000e-88
Identity = 166/268 (61.94%), Postives = 202/268 (75.37%), Query Frame = 3
Query:  240 TATPPTKQQKLIKAGLLLGLVLV--IAYVVLDYTVPGLGFVDNVLQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDG-----------DDSTVQLIVLIVGGIATVIAVVLISIYAKRALNKVLEE 1004
            T     K++K+ K  L LGLVLV  I YV++DY+VP LG V+ VL  FL WVE+NP  G  AFA VY+F TVAFIPGSLLTLGAGLVFGRALG G GV +GS  V   A IG I AF+LGR+VLQD AQ LFNKFK+++AVD+AIE+QGLKL +LLRLSPVVPF+AFNYIMG+TA+  +DY +GC+G+IPGTVA+VFIG++ASG+ GD +  +E   D            D+ TV LIV+IVG IATVIAV LIS YAK+ALN++L E
Sbjct:   14 TGASKGKKEKIRK--LCLGLVLVGLIIYVIVDYSVPSLGNVNIVLSDFLAWVEDNPIEGVFAFACVYMFCTVAFIPGSLLTLGAGLVFGRALGIGRGVALGSFAVILGASIGAIIAFILGRYVLQDTAQVLFNKFKIMRAVDKAIESQGLKLCLLLRLSPVVPFNAFNYIMGLTAISLKDYTIGCLGIIPGTVAYVFIGSSASGI-GDMKGNDEEQNDNTKDADGEESSSDNDTVFLIVIIVGAIATVIAVFLISWYAKKALNRILNE 278          
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: A0A7S3YEX9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEX9_HETAK)

HSP 1 Score: 274 bits (700), Expect = 1.770e-84
Identity = 161/263 (61.22%), Postives = 196/263 (74.52%), Query Frame = 3
Query:  258 KQQKLIKAGLLLGLVLVIAYVVLDYTVPGLGFVDNVLQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDGDDST-----------VQLIVLIVGGIATVIAVVLISIYAKRALNKVLEEDAE 1013
            ++ KLIK GLL  LV +I YVVLDYT+P LG V+ +L SFL WVEE+PG G VAFA+VY+ TTV FIPGS+LTLGAGLVFGRAL          XX XXX       AFLLGR+VLQD AQ LFNKF VLKAVD+AIE +GL+LVILLRLSPV+PFSAFNY+MG+T V FR YVLGCVGM+PGTVA+VFIGT+A+GLLGD++D  +  E                 V ++VL+VG  ATV+AVVLI++ ++RAL +VL ++AE
Sbjct:   44 RKNKLIKFGLLSLLVGIIIYVVLDYTLPSLGHVNRILTSFLLWVEEHPGEGVVAFASVYVLTTVLFIPGSILTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXXIAFLLGRYVLQDSAQKLFNKFSVLKAVDKAIENEGLRLVILLRLSPVIPFSAFNYVMGLTRVMFRQYVLGCVGMLPGTVAYVFIGTSAAGLLGDADDGSQESEXXXXXXXXXXXXXXXRLVNIVVLVVGAAATVLAVVLITVASRRALRRVLMKEAE 306          
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: A0A6H5JID7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID7_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 3.580e-59
Identity = 113/245 (46.12%), Postives = 163/245 (66.53%), Query Frame = 3
Query:  357 DNV---LQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDGDDSTVQLIVLIVGGIATVIAVVLISIYAKRALNKVL-----------EEDAEAESNAAQIVAGS 1049
            DNV   L++  +W+E+NP  G V FA ++  +T+ F+PG LLT+GAG+ FGRALG G GVL GS  V   A++ C+ AF LGR+VL +QAQ    ++++L AV+ AIE  G+K++ILLRLSP+VPFS FN+I G+T V  RDY+LG VG++PGT+AFV+IG + +G + + E       D  +  +++  LIVG +A V+A+V ++IYA+RAL + L           EE AE E +A  +  GS
Sbjct:   87 DNVRTWLETSFEWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEQEAMNSGEADRTECIIRMATLIVGAVAAVLAIVAVTIYARRALKQALVESELDANADKEEKAEHEGSATDVECGS 331          
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: A0A7S4JVV3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JVV3_9STRA)

HSP 1 Score: 203 bits (516), Expect = 1.340e-57
Identity = 112/253 (44.27%), Postives = 169/253 (66.80%), Query Frame = 3
Query:  264 QKLIKAGLLLGLVLVIAYVVLDYTVPGLGFVDNVLQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGL--LGDSEDEEEAMEDGDDSTVQLIVLIVGGIATVIAVVLISIYAKRALNKVLEEDAEA 1016
            +KL+ A +L+G    I +V++D T  G  ++ + +Q+FL+W+EENP  G   F  VY+  TV F+PG +LTLGAG VF  A GTGLG+ VG+  V   A +G + AFL+ R++L++ A GL  KF + +A+D+A+E +GLK++ILLRLSPV+PF+A NY+ GVTAV F+DY L    M+PGT+ +VF+G +A  L  +G S D +          + +  ++VG +  ++AV L S YAK+ LNK+L+++ EA
Sbjct:   17 KKLVLALVLIGF---IVFVIIDSTTNG--YIKDGIQTFLRWIEENPIEGFFMFMGVYVLATVLFVPGLILTLGAGYVFSNAFGTGLGLFVGTISVFVGASLGSMLAFLISRYILREWAVGLTEKFPIFRAIDQALEEKGLKIIILLRLSPVIPFNALNYVCGVTAVSFKDYSLALFAMLPGTILYVFLGASAQSLATIGSSTDSK---------ALTISTVVVGVVLGIVAVALSSRYAKKELNKILDQEEEA 255          
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: A0A7S2A6Q3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6Q3_TRICV)

HSP 1 Score: 193 bits (490), Expect = 2.960e-53
Identity = 105/243 (43.21%), Postives = 159/243 (65.43%), Query Frame = 3
Query:  285 LLLGLVLV--IAYVVLDYTVPGLGFVDNVLQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDGDDSTVQLIVLIVGGIATVIAVVLISIYAKRALNKVLEED 1007
            +++GLVLV  I ++++D    G  FV   ++  L+W+EENP  G   F AVY   TV F+PGSLLTLG+G VF  + G G GVL+ +  V   A +G + AF+LGR++L+D  + L  K+ V +A+D+A+E +GL+++ILLRLSP++PF+A NYI GVT+V F+ Y      ++PGT+ FVF+G +A  L+       ++   GD   V +  ++VG +  VIA+ L S YAK+ LNK+LE++
Sbjct:   47 IIVGLVLVGLIVFIIVDSVTHG--FVKGAIEGLLQWIEENPIRGLFVFMAVYFVATVLFVPGSLLTLGSGFVFAESFGLGFGVLLATLAVFVGATLGALVAFILGRYLLRDWVENLTKKYNVFRAIDKALEEKGLRIMILLRLSPIIPFNALNYICGVTSVSFKHYAWANFAILPGTILFVFLGASAGSLV-------DSGNGGDTPVVTIATIVVGVVFGVIAIALTSRYAKKELNKILEQE 280          
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: A0A7S2JYW7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JYW7_9STRA)

HSP 1 Score: 187 bits (476), Expect = 8.990e-52
Identity = 115/264 (43.56%), Postives = 168/264 (63.64%), Query Frame = 3
Query:  228 EEDVTA---TPPTKQQKLIKAGLLLGLVLV--IAYVVLDYTVPGLGFVDNVLQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDGDDSTVQLIVLIVGGIATVIAVVLISIYAKRALNKVLEE 1004
            +E+VT    TP + +  L+K  LL+G +L+  IAYV++D +  G G V + ++ FL WVE+NP  G  AF  VY   TV FIPG++LTLGAG VF  A G G+GVL+ S  V   A  G + +FLLGR++L+D    L +K+++  A+D A+   G K++ LLRLSP++PF+A NYI GVT+V FRD  L  + ++PGTV +VF+G++A G L DSE        GDD T  +I ++ G +  ++ +   S YAK+ LN V+ +
Sbjct:    1 QEEVTTKEQTPKSSKADLVKK-LLIGSILLAFIAYVIVD-SASGDGRVTSTVEDFLDWVEDNPAEGVFAFIGVYFVATVLFIPGTILTLGAGFVFSSAFGLGVGVLLASIAVFVGASSGALASFLLGRYLLRDWVMTLTSKYQLFGAIDTALTNNGFKIMSLLRLSPIIPFNALNYIAGVTSVSFRDNALALLFILPGTVMYVFLGSSA-GSLSDSESS------GDDQTTTIITVVFGIVFGLLGIAATSYYAKKELNAVIAQ 255          
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: A0A7S2MII1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MII1_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.310e-51
Identity = 106/260 (40.77%), Postives = 167/260 (64.23%), Query Frame = 3
Query:  258 KQQKLIKAGLLLGLVLVIAYVVLDYTVPGLGFVDNVLQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDGDDSTVQLIVLIVGGIATVIAVVLISIYAKRALNKVLEEDAEAESNAAQI 1037
            ++ +LIK  L L LV  I YV++D+       +   ++SFL W+E+NP  G  AF  VY   T+ F PG +LTLGAG VF  ALG GLGV++ +  V   A  G + AFL+GR++L+D   GL  K+ + +AVD A++ +GL+++ILLRLSP++PF+A NYI+GVT+V FRD+ +  +G++PGT+ +VF+G++A  L   S         GD+S V+++ +++G +  ++ V + S YA++ L  V+      E+ AAQ+
Sbjct:   26 RKARLIKIALGLLLVGFIIYVIVDFATSK--HLRTAMESFLNWIEDNPTEGVFAFMGVYFVATILFAPGLILTLGAGFVFANALGLGLGVVLATTAVFVGASTGSMAAFLIGRYLLRDWVVGLTKKYAIFEAVDVALKEKGLRIMILLRLSPLIPFNALNYIVGVTSVSFRDFTIAMIGILPGTLLYVFLGSSAGSLTDSSSG-------GDNSAVRILTIVLGSVFGILGVCVTSYYARKELQNVISRR---EAEAAQL 273          
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: A0A7S4W131_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W131_9STRA)

HSP 1 Score: 186 bits (473), Expect = 8.200e-51
Identity = 105/259 (40.54%), Postives = 163/259 (62.93%), Query Frame = 3
Query:  240 TATPPTKQQK-LIKAGLLLGLVLVIAYVVLDYTVPGLGFVDNVLQ---SFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDGDDSTVQLIVLIVGGIATVIAVVLISIYAKRALNKVLEE 1004
            T TPPT ++  L K G  L LV  I YV++D     L    N ++    FL W+E+NP  G  AF  VYI  ++ FIPG +LTLGAG VF  ALG G+G+ + +  V   A  G   +FL+GR++L+D    L  K  + +A+D A++ +GL+++ILLR+SP+VPF+ FNY+ GVT++  RDY +G +G++PGT+ ++ +G++A  L+  S         G+DSTV++I +++G +  V+ V   + YAK+ LNK+L +
Sbjct:   16 TQTPPTSRRAFLFKIGFGLILVGFIIYVIID-----LATTKNTMRIVADFLDWIEDNPAAGVFAFIGVYIIASIFFIPGLILTLGAGFVFANALGLGVGIFLATVAVFFGAFFGACASFLIGRYLLRDCVGKLTKKRVIFEAIDAALKDKGLRIMILLRVSPLVPFNVFNYVAGVTSISLRDYAIGMIGILPGTLLYILLGSSAGSLVDSSSS-------GNDSTVRIISIVLGIVFAVLGVYATTYYAKKELNKILSQ 262          
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: A0A0G4EY60_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EY60_VITBC)

HSP 1 Score: 186 bits (473), Expect = 1.160e-50
Identity = 113/251 (45.02%), Postives = 158/251 (62.95%), Query Frame = 3
Query:  276 KAGLLLGLVLVIAYVVLDYTVPGLGFVDNVLQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDGDDSTVQLIVLIVGGIATVIAVVLISIYAKRALNKVLEEDAEAESNA 1028
            K  + L ++ +I Y+++D T  G    +  L  F +WV++NP  G +A+ AVY+  TVAFIPGS+LTLGAG  F  A G G G+  G   V   A +G   AF  GRF+ +   QGL +KFKV++A+D+  ETQGLKL ILLRLSPVVPFSAFNYIMG T  ++RDY +G +G+IPGT  +V+IG   +   G    + E    G     Q + L VG +AT IAV +++ +A++AL ++ E++A   S A
Sbjct:   55 KLLVFLVIIAIIVYIIIDSTT-GQRVAEG-LDIFKEWVQDNPATGILAYMAVYMVCTVAFIPGSILTLGAGFTFVCAFGNGPGMAAGIGAVLVGAFVGAQLAFFCGRFLFKSWVQGLTDKFKVMRAIDKVFETQGLKLNILLRLSPVVPFSAFNYIMGGTRTRYRDYAIGTLGIIPGTALYVYIGAIPA-FAGACSGKAE----GSGHWSQWVFLAVGLVATFIAVFIVTWFARKALREITEKEAAEASKA 298          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIK1_ECTSI1.400e-11473.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2Y1P9_9STRA2.000e-8861.94Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3YEX9_HETAK1.770e-8461.22Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5JID7_9PHAE3.580e-5946.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4JVV3_9STRA1.340e-5744.27Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2A6Q3_TRICV2.960e-5343.21Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2JYW7_9STRA8.990e-5243.56Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2MII1_9STRA1.310e-5140.77Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S4W131_9STRA8.200e-5140.54Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A0G4EY60_VITBC1.160e-5045.02Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:401833..404481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score352.1
Seed ortholog evalue2.8e-94
Seed eggNOG ortholog2880.D7FIK1
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
Hectar predicted targeting categoryother localisation
EggNOG free text desc.canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsCOG0398@1,KOG3140@2759
EC1.14.13.9
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons4
Model size1670
Cds size969
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.902.1prot_C-linearis_contig104.902.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 402367..404314 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927387.6744862-UTR-C-linearis_contig104:401832..4023661622927387.6744862-UTR-C-linearis_contig104:401832..402366Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 401833..402366 -
1690879670.194528-UTR-C-linearis_contig104:401832..4023661690879670.194528-UTR-C-linearis_contig104:401832..402366Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 401833..402366 -
1622927387.7302794-UTR-C-linearis_contig104:404314..4044811622927387.7302794-UTR-C-linearis_contig104:404314..404481Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 404315..404481 -
1690879670.2445908-UTR-C-linearis_contig104:404314..4044811690879670.2445908-UTR-C-linearis_contig104:404314..404481Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 404315..404481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927387.6860728-CDS-C-linearis_contig104:402366..4027571622927387.6860728-CDS-C-linearis_contig104:402366..402757Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 402367..402757 -
1690879670.2066932-CDS-C-linearis_contig104:402366..4027571690879670.2066932-CDS-C-linearis_contig104:402366..402757Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 402367..402757 -
1622927387.695699-CDS-C-linearis_contig104:403165..4033591622927387.695699-CDS-C-linearis_contig104:403165..403359Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 403166..403359 -
1690879670.2173617-CDS-C-linearis_contig104:403165..4033591690879670.2173617-CDS-C-linearis_contig104:403165..403359Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 403166..403359 -
1622927387.7078323-CDS-C-linearis_contig104:403675..4038911622927387.7078323-CDS-C-linearis_contig104:403675..403891Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 403676..403891 -
1690879670.2269754-CDS-C-linearis_contig104:403675..4038911690879670.2269754-CDS-C-linearis_contig104:403675..403891Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 403676..403891 -
1622927387.7182117-CDS-C-linearis_contig104:404146..4043141622927387.7182117-CDS-C-linearis_contig104:404146..404314Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 404147..404314 -
1690879670.2368536-CDS-C-linearis_contig104:404146..4043141690879670.2368536-CDS-C-linearis_contig104:404146..404314Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 404147..404314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.902.1

>prot_C-linearis_contig104.902.1 ID=prot_C-linearis_contig104.902.1|Name=mRNA_C-linearis_contig104.902.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=323bp
MSTTDLSNVNAIDKPMTTEEEEDVTATPPTKQQKLIKAGLLLGLVLVIAY
VVLDYTVPGLGFVDNVLQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGS
LLTLGAGLVFGRALGTGLGVLVGSLAVLVGAIIGCIFAFLLGRFVLQDQA
QGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKF
RDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDGDDSTVQLIV
LIVGGIATVIAVVLISIYAKRALNKVLEEDAEAESNAAQIVAGSMMTEDI
EAAAGTRPSVIEHPVRTNVEQA*
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mRNA from alignment at C-linearis_contig104:401833..404481-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.902.1 ID=mRNA_C-linearis_contig104.902.1|Name=mRNA_C-linearis_contig104.902.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2649bp|location=Sequence derived from alignment at C-linearis_contig104:401833..404481- (Chordaria linearis ClinC8C monoicous)
GATACGTAAGGCCATGAACACACAATCCTCCGCACACCCCACACACAACC ACACCCGAGTAATCCAGTCACCACCGCCACTACCTCTACAGCTCCCTCTC CTACCAACACACCACCAACCTCTCTCTTTCCACAGCTACAGCACCACCCT CCGACTCTCGCTGCAGCATGTCGACAACGGATTTGTCCAACGTGAACGCC ATCGACAAGCCCATGACCACGGAAGAAGAAGAAGATGTGACCGCCACCCC CCCGACCAAGCAACAGAAGCTTATCAAAGCTGGACTGCTCTTGGGGCTCG TCTTGGTCATCGCCTATGTTGTCCTGGACTACACGGTGAGTCATCTCTGC TGTAGATACAGCAGTATTGTAGCAGCACACGTTCGTAGGCATCAATACAG CTATCTGAGCGCAAGAGACCACAAACAGAGCCCGAACCTTGCGGCGCGAC CTTATAGGCTTGCTGGTCGTGGATTGTGAGGAGTGAGGGCAGATCGGTGC TGTGTACCCTTTAAAGGCATAGTGCACTTTGAATCTAAAGCTTCGCCCTC TCTGCTCTTCATACATACGAATGTATGCACCATCGTCCAGGTGCCCGGGC TTGGCTTCGTTGACAACGTCCTCCAGTCTTTCCTCAAGTGGGTTGAAGAA AACCCTGGACTAGGCGCGGTCGCCTTCGCCGCAGTGTACATCTTCACAAC CGTGGCCTTCATTCCGGGGTCGCTACTCACGCTGGGCGCCGGGCTCGTGT TCGGTCGCGCATTGGGCACTGGTTTGGGCGTGCTGGTGGGGTCCCTGGCG GTGCTGGTGAGTTGTCATTCGTGGAAAGGCAATCTGCAAAGCCTAGAGCT GTGTTTTCCCTCATTCCAGCAGTGATCTTTGTGTAAACGCGGACCCTTCT TGCGGAATTTCCATGCAAAAGCTGGCCACTTGAAAATGCAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGCCAACGCCCCTCATAGGCAGCAG GACATCATGTTGCTCAATATACGGACACCAAAGGAAGTTGACCAATGACA GCTTGTTGAAATCGGTTTGTCGTTTCCTGACCTCCCGCGCGTTCTCTCTG CCGCACCTGCTTGATTCGACAGGTTGGTGCTATCATAGGGTGCATCTTCG CCTTCCTACTGGGCCGTTTCGTGCTCCAGGATCAGGCTCAGGGGCTGTTC AACAAGTTCAAGGTCCTCAAGGCCGTCGACCGGGCGATCGAGACGCAGGG ATTGAAGCTCGTGATTCTCCTCCGCCTGTCTCCGGTGGTGCCTTTCAGCG CCTTCAACTATATTATGTGAGATAATTTGAAACAAGCATCCGATTAAGTA GTGAAGATCACCGTGTGTTGCAAGAAGCCCCTTATTTTGCCGTTGACTTT TTCTAAACGCAGTGTTTAGGGGTACAGCAGTACTGGTTTTTCTCTGTGAT TTGGTTGGAAGGCAGCGAATGGGGGAATGAGGCGATGCATGTCTTTTGTT GTCCTATTTGTACTTCCCGTGTCGCCCAGCGCACTGCAAGGACTAAACAC GTTTGCGGTGTTGGCAAGGGGATTGTGAAGCACAGCCGAATTGAGATAAT CTGGTCCCTATATGCACGTGTTTGTACAAGCGCAGCATGTCAGAAGGGGG CCCATCTCTCTCTCCCTGGGACGTGATTCACTACCCCTCCCTTGCCTTCT TGTCCGGATATTCTCCTTCCTCAGGGGTGTGACGGCCGTCAAGTTCCGAG ACTACGTCCTGGGTTGCGTGGGCATGATCCCCGGCACGGTGGCATTCGTC TTCATCGGCACCACGGCGTCGGGTCTGTTGGGAGATAGCGAAGATGAGGA GGAGGCTATGGAGGACGGGGATGACTCGACGGTGCAGCTCATCGTCCTCA TCGTGGGGGGAATCGCTACCGTGATCGCGGTTGTGCTGATCAGCATCTAC GCGAAGCGCGCCCTGAACAAGGTGCTGGAGGAGGACGCGGAAGCAGAGAG CAACGCGGCCCAGATTGTAGCCGGCTCGATGATGACCGAGGACATCGAAG CCGCAGCGGGCACACGGCCTTCTGTCATCGAGCACCCCGTTAGGACGAAC GTGGAGCAGGCATAGAGTAGCTGAATTTTATGCTGTCGGCGTGATCGATC CCGGTCGGCGGAGGCTTGTTGCCTCGGGGTCACGCCTCGAAATGTTCCTA TGTTTGGATGCTCTGCGCTGTTTCACGCTTTTGGTGGTGATTGTACACGC CCCTCGCGTAGTTTGTAGTTTTGGTGTATATTTGTGGTGATTTTTGAGAG TGTGTTTTGAAGCACCCATCATTCCTTTGTGGCGGGTTTGGTCCGTGTAT TTTGGATACGGTGTCGTGTATGATGTTCCGGTACAGCAGTATCGAAGGTG CGAGAACTGGCTTGCCTCGCTTAAAATGGTTACCCGTGGTCTCGGTGTTT TTATGTGCCTCCTCAGTGTCTCTACGTTTGTTTTGTGTGTTGGGTGTTGT TTCGGGTTGTGATGAGTGCCAGTAGGTGGCAGACTGACGTGATCGATTTT GTTCCTTTCTTCGACACGGTCAGTCGATCGGACGATGTAAATATGAAAAA TGAAGCGGAACTTTTATTTTAGTACGAGGTATGTTTTGTTGTTTTTGTC
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Coding sequence (CDS) from alignment at C-linearis_contig104:401833..404481-

>mRNA_C-linearis_contig104.902.1 ID=mRNA_C-linearis_contig104.902.1|Name=mRNA_C-linearis_contig104.902.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1938bp|location=Sequence derived from alignment at C-linearis_contig104:401833..404481- (Chordaria linearis ClinC8C monoicous)
ATGTCGACAACGGATTTGTCCAACGTGAACGCCATCGACAAGCCCATGAC
CACGGAAGAAGAAGAAGATGTGACCGCCACCCCCCCGACCAAGCAACAGA
AGCTTATCAAAGCTGGACTGCTCTTGGGGCTCGTCTTGGTCATCGCCTAT
GTTGTCCTGGACTACACGATGTCGACAACGGATTTGTCCAACGTGAACGC
CATCGACAAGCCCATGACCACGGAAGAAGAAGAAGATGTGACCGCCACCC
CCCCGACCAAGCAACAGAAGCTTATCAAAGCTGGACTGCTCTTGGGGCTC
GTCTTGGTCATCGCCTATGTTGTCCTGGACTACACGGTGCCCGGGCTTGG
CTTCGTTGACAACGTCCTCCAGTCTTTCCTCAAGTGGGTTGAAGAAAACC
CTGGACTAGGCGCGGTCGCCTTCGCCGCAGTGTACATCTTCACAACCGTG
GCCTTCATTCCGGGGTCGCTACTCACGCTGGGCGCCGGGCTCGTGTTCGG
TCGCGCATTGGGCACTGGTTTGGGCGTGCTGGTGGGGTCCCTGGCGGTGC
TGGTGCCCGGGCTTGGCTTCGTTGACAACGTCCTCCAGTCTTTCCTCAAG
TGGGTTGAAGAAAACCCTGGACTAGGCGCGGTCGCCTTCGCCGCAGTGTA
CATCTTCACAACCGTGGCCTTCATTCCGGGGTCGCTACTCACGCTGGGCG
CCGGGCTCGTGTTCGGTCGCGCATTGGGCACTGGTTTGGGCGTGCTGGTG
GGGTCCCTGGCGGTGCTGGTTGGTGCTATCATAGGGTGCATCTTCGCCTT
CCTACTGGGCCGTTTCGTGCTCCAGGATCAGGCTCAGGGGCTGTTCAACA
AGTTCAAGGTCCTCAAGGCCGTCGACCGGGCGATCGAGACGCAGGGATTG
AAGCTCGTGATTCTCCTCCGCCTGTCTCCGGTGGTGCCTTTCAGCGCCTT
CAACTATATTATGTTGGTGCTATCATAGGGTGCATCTTCGCCTTCCTACT
GGGCCGTTTCGTGCTCCAGGATCAGGCTCAGGGGCTGTTCAACAAGTTCA
AGGTCCTCAAGGCCGTCGACCGGGCGATCGAGACGCAGGGATTGAAGCTC
GTGATTCTCCTCCGCCTGTCTCCGGTGGTGCCTTTCAGCGCCTTCAACTA
TATTATGGGTGTGACGGCCGTCAAGTTCCGAGACTACGTCCTGGGTTGCG
TGGGCATGATCCCCGGCACGGTGGCATTCGTCTTCATCGGCACCACGGCG
TCGGGTCTGTTGGGAGATAGCGAAGATGAGGAGGAGGCTATGGAGGACGG
GGATGACTCGACGGTGCAGCTCATCGTCCTCATCGTGGGGGGAATCGCTA
CCGTGATCGCGGTTGTGCTGATCAGCATCTACGCGAAGCGCGCCCTGAAC
AAGGTGCTGGAGGAGGACGCGGAAGCAGAGAGCAACGCGGCCCAGATTGT
AGCCGGCTCGATGATGACCGAGGACATCGAAGCCGCAGCGGGCACACGGC
CTTCTGTCATCGAGCACCCCGTTAGGACGAACGTGGAGCAGGCATAGGGG
TGTGACGGCCGTCAAGTTCCGAGACTACGTCCTGGGTTGCGTGGGCATGA
TCCCCGGCACGGTGGCATTCGTCTTCATCGGCACCACGGCGTCGGGTCTG
TTGGGAGATAGCGAAGATGAGGAGGAGGCTATGGAGGACGGGGATGACTC
GACGGTGCAGCTCATCGTCCTCATCGTGGGGGGAATCGCTACCGTGATCG
CGGTTGTGCTGATCAGCATCTACGCGAAGCGCGCCCTGAACAAGGTGCTG
GAGGAGGACGCGGAAGCAGAGAGCAACGCGGCCCAGATTGTAGCCGGCTC
GATGATGACCGAGGACATCGAAGCCGCAGCGGGCACACGGCCTTCTGTCA
TCGAGCACCCCGTTAGGACGAACGTGGAGCAGGCATAG
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