prot_C-linearis_contig104.900.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig104.900.1
Unique Nameprot_C-linearis_contig104.900.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length134
Homology
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BLAST of mRNA_C-linearis_contig104.900.1 vs. uniprot
Match: D8LEB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB3_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 2.290e-47
Identity = 92/134 (68.66%), Postives = 106/134 (79.10%), Query Frame = 0 
Query:    1 MTELRRSSRVRQSAKHSSSYYEPSDKSASLFATPDVRPRKWQMAEAPVGYFTVNRWTPKDQQHLTADLHGGLTDPVEIAAAKRALRASSKVSTRFKTRGRMGGGARLSSARRAS--VSDNSYGVGAGPGPGQWG 132
            MTELRRSSRVRQSAKH+S+YY P +K+ SLF+TP VRPR W+ A+   GYFTV RW P+DQQHLTA LHGGLTDP EIAAAK++LRA+SK STRFK+R RMG GARLS+ RR+S  V DNS   GA  G   WG
Sbjct:    1 MTELRRSSRVRQSAKHASTYYIPDEKN-SLFSTPGVRPRGWRTADVAAGYFTVKRWMPRDQQHLTAGLHGGLTDPAEIAAAKQSLRANSKASTRFKSRNRMGSGARLSTLRRSSGSVQDNSNFGGAAGGGSSWG 133
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BLAST of mRNA_C-linearis_contig104.900.1 vs. uniprot
Match: A0A835ZBY9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.110e-12
Identity = 44/105 (41.90%), Postives = 58/105 (55.24%), Query Frame = 0 
Query:    1 MTELRRSSRVRQSAKHSSSYYEPSD-KSASLFATPDVRPRKWQMAEAPVGYFTVNRWTPKDQQHLTADLHGGLTDPVEIAAAKRALRASSKVSTR-FKTRGRMGG 103
            MTELRRS RVRQSA+  +  Y     + AS+ A  D+R R+WQ  E  +G F V +W PK QQHLTA+LH    D        + L+     S R  ++R  +GG
Sbjct:    4 MTELRRSVRVRQSARGGTETYNDFIVEEASVLAFKDIRAREWQKVEVQLGTFKVKKWVPKSQQHLTAELHEHKADTGHRLKKSKRLKGRIPPSKRGLRSRHSLGG 108
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.900.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEB3_ECTSI2.290e-4768.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZBY9_9STRA7.110e-1241.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:391897..398045 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.900.1mRNA_C-linearis_contig104.900.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig104 391855..398045 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig104.900.1 ID=prot_C-linearis_contig104.900.1|Name=mRNA_C-linearis_contig104.900.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=134bp
MTELRRSSRVRQSAKHSSSYYEPSDKSASLFATPDVRPRKWQMAEAPVGY
FTVNRWTPKDQQHLTADLHGGLTDPVEIAAAKRALRASSKVSTRFKTRGR
MGGGARLSSARRASVSDNSYGVGAGPGPGQWGSA
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