prot_C-linearis_contig104.898.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig104.898.1
Unique Nameprot_C-linearis_contig104.898.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length565
Homology
BLAST of mRNA_C-linearis_contig104.898.1 vs. uniprot
Match: D8LEB0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB0_ECTSI)

HSP 1 Score: 295 bits (755), Expect = 2.950e-90
Identity = 268/546 (49.08%), Postives = 308/546 (56.41%), Query Frame = 0
Query:   21 EPTKEANKGLAWWRPR---RSNLADLSNTSSTSTSILSTSSPPQRQHRSNHHGQDSPSSANRLLFDDPATEGERGAAASGPAARPFETMQKPPQAAGGKQLWTRGSREGIAAPSPEAEDDRNXXXXXXXXXXXXXXXXXAYSNASXXXXXRPQEDLLGSSSGKLKSLKLASTGIANDA--TATATATGDSLPGTPVTSIGGSDASDSTWTNSPGRAKGRRHEXXXXXXXXXXXXXXLRWRSEQGRTLSKPPRPQREARPPAAAGNDTEVDTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGAGIAVANAGNAD--GMVCDAAREIEADAW--EGTDDETAVRFNEATERGVVYDILAVDRGCGFCDTSIVPFPVEEGGQVEATRMRDLTSGQSEFLARRGFAAGLVSHFLEETNCEFRVLQGGASCGMTAHQLQEAAVRLEEAFVPAVKRLRARTSMDVVLDSLFEGKDDAGEFVVRFEVSITRCHPEDIESSPAPALQECARAIREAIREEGVPEESTHEVVFVGRPMWELVSPVLDFSAR 557
            E +K+ + G AWWRPR   R++LAD+S  S+T+TS++S                             P++  +  AAA     + FET  KP         WTRGSR+G  APSP+ +D   XXXXXXXXXXXXXXXXX      XXXXX P++ LLGSSSGKLKSLKLA  G    A  TA A A     PGTPV   G      STW   P +    R +XXXXXXXXXXXXXX        RT                AG                                        GA  AVA+ G     G    A   +   +W  EG DDETA                                  EEGGQV A RMR LTSGQ EFLARRGFAAGLVSHFLEETNCEFRVLQGGASCGM A QL++AA RLEE FVPAVKRLRAR+S+DVVLDSLF+G DDAG+FVVRFEV++TRCHPEDI+SSPAPAL+ECA AI+EA+R+EGV ++ THEVVFVGRPMWELVSPVLD SA+
Sbjct:   25 EVSKQNSNGFAWWRPRSILRASLADVS-LSTTNTSVVSXXXXXXXXXXXXXXXXXXXXXXXXXXX--PSSLFDVAAAAQ---QQQFETQLKPKIQH--HSNWTRGSRDGTEAPSPDEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEQGLLGSSSGKLKSLKLAPIGSEQLAKHTAAAAAVDSDRPGTPVRGGG----IGSTWCVGPLQV---RRQXXXXXXXXXXXXXXXXXXXXXXRTNHH-------------AG--------------------------------------AVGARFAVASEGGMGTLGEKATAQAGVGEGSWREEGMDDETAA---------------------------------EEGGQVAAERMRALTSGQGEFLARRGFAAGLVSHFLEETNCEFRVLQGGASCGMNAQQLEDAAARLEEVFVPAVKRLRARSSVDVVLDSLFQGADDAGDFVVRFEVTLTRCHPEDIDSSPAPALRECASAIKEAVRDEGVNDKDTHEVVFVGRPMWELVSPVLDLSAK 471          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.898.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEB0_ECTSI2.950e-9049.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.420.40coord: 361..541
e-value: 9.4E-9
score: 36.4
NoneNo IPR availableGENE3D3.30.420.40coord: 336..360
e-value: 9.4E-9
score: 36.4
NoneNo IPR availableGENE3D3.90.640.10coord: 412..515
e-value: 9.4E-9
score: 36.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:372762..375716 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.898.1mRNA_C-linearis_contig104.898.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig104 372227..375919 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig104.898.1 ID=prot_C-linearis_contig104.898.1|Name=mRNA_C-linearis_contig104.898.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=565bp
MDLHDQSRHQRSSSVKAAAGEPTKEANKGLAWWRPRRSNLADLSNTSSTS
TSILSTSSPPQRQHRSNHHGQDSPSSANRLLFDDPATEGERGAAASGPAA
RPFETMQKPPQAAGGKQLWTRGSREGIAAPSPEAEDDRNNTNTGATTTGA
PPVLLPAYSNASTARRRRPQEDLLGSSSGKLKSLKLASTGIANDATATAT
ATGDSLPGTPVTSIGGSDASDSTWTNSPGRAKGRRHEQQQQQQQQQQQQQ
QLRWRSEQGRTLSKPPRPQREARPPAAAGNDTEVDTTNRSTAATHGEKAA
VVAQGGAGGSSSSNSSSTNGAGIAVANAGNADGMVCDAAREIEADAWEGT
DDETAVRFNEATERGVVYDILAVDRGCGFCDTSIVPFPVEEGGQVEATRM
RDLTSGQSEFLARRGFAAGLVSHFLEETNCEFRVLQGGASCGMTAHQLQE
AAVRLEEAFVPAVKRLRARTSMDVVLDSLFEGKDDAGEFVVRFEVSITRC
HPEDIESSPAPALQECARAIREAIREEGVPEESTHEVVFVGRPMWELVSP
VLDFSARPREEAAC*
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