prot_C-linearis_contig104.896.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig104.896.1
Unique Nameprot_C-linearis_contig104.896.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length118
Homology
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BLAST of mRNA_C-linearis_contig104.896.1 vs. uniprot
Match: D8LKS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS4_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 5.590e-28
Identity = 62/97 (63.92%), Postives = 70/97 (72.16%), Query Frame = 0 
Query:    3 KLAAELARLVQEDGSLLEEEGKLLPLCSTDVAPGYRGRTKGKGRFGLTKDGSLVLGVHNSNKPNSFVSGGTIPVTTKGPPYAVPAFAIAPLRAGRFV 99
            KLAA L RLV+EDGSLLE    L PLC  DV+PGY G  K KG FGL  +G +VL VHNSNKPN  VS G IPVTT+ PP+ VPAFAI P RAG+ +
Sbjct:  139 KLAATLQRLVEEDGSLLEP---LPPLCGIDVSPGYPGVIKAKGTFGLD-EGRVVLRVHNSNKPNVCVSEGAIPVTTRTPPFKVPAFAIGPPRAGKLM 231
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BLAST of mRNA_C-linearis_contig104.896.1 vs. uniprot
Match: A0A6H5JI61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI61_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.970e-17
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = 0 
Query:   30 STDVAPGYRGRTKGKGRFGLTKDGSLVLGVHNSNKPNSFVSGGTIPVTTKGPPYAVPAFAIAPLRAGRFV 99
            S    PGY G T+ KG+FGL  +G +VL VHNSNKPN  VS G IPVTT+ PP+ VPAFAI PLRAG+ +
Sbjct:  214 SDTQTPGYPGVTRAKGKFGLD-EGRVVLRVHNSNKPNVCVSEGAIPVTTRTPPFTVPAFAIGPLRAGKVI 282
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.896.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKS4_ECTSI5.590e-2863.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI61_9PHAE1.970e-1761.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:350867..351220 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.896.1mRNA_C-linearis_contig104.896.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig104 350518..351437 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig104.896.1 ID=prot_C-linearis_contig104.896.1|Name=mRNA_C-linearis_contig104.896.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=118bp
MIKLAAELARLVQEDGSLLEEEGKLLPLCSTDVAPGYRGRTKGKGRFGLT
KDGSLVLGVHNSNKPNSFVSGGTIPVTTKGPPYAVPAFAIAPLRAGRFVS
TKVYNETERKLAKSNQG*
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