mRNA_C-linearis_contig104.896.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.896.1
Unique NamemRNA_C-linearis_contig104.896.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig104.896.1 vs. uniprot
Match: D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 1.240e-46
Identity = 91/164 (55.49%), Postives = 110/164 (67.07%), Query Frame = 2 
Query:  206 SCSSGRIGASPGLNGVGKPFNSGAGAAARDFSREGAGKKYYGLHVDVPMIKLAAELARLVQEDGSLLEEEGKLLPLCSTDVAPGYRGRTKGKGRFGLTKDGSLVLGVHNSNKPNSFVSGGTIPVTTKGPPYAVPAFAIAPLRAGRFVSTKVYNETERKLAKSNQ 697
            + S   + + PG   VGKPFNSG GA ARDFS EGA  K+YGLH+D+P   LAA+L  LVQ DGSL     K  PLC T+V P + G TKG+  FGL ++G+L++GVHN    N  V GGTIPVTT  PPY VP FAIAPL AG+ VS K +N+ ER  AK N+
Sbjct:  377 AASQKALNSGPGYGAVGKPFNSGNGATARDFSAEGANDKWYGLHLDIPTRDLAAKLRLLVQPDGSL-----KDAPLCDTEVNPDHPGLTKGRSTFGLDREGALIMGVHNGQSLNRCVGGGTIPVTTAAPPYRVPHFAIAPLLAGKIVSNKTHNKRERTRAKLNE 535
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BLAST of mRNA_C-linearis_contig104.896.1 vs. uniprot
Match: D8LKS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS4_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.620e-39
Identity = 88/161 (54.66%), Postives = 102/161 (63.35%), Query Frame = 2 
Query:  197 GYPSCSSGRIGASPGLNGVGKPFNSGAGAAARDFSREGAGKKYYGLHVDVPMIKLAAELARLVQEDGSLLEEEGKLLPLCSTDVAPGYRGRTKGKGRFGLTKDGSLVLGVHNSNKPNSFVSGGTIPVTTKGPPYAVPAFAIAPLRAGRFVSTKVYNETERK 679
            G  +  S  I +  G N  G     GAG AARDFS EGAG+KY+GL + +P  KLAA L RLV+EDGSLLE    L PLC  DV+PGY G  K KG FGL  +G +VL VHNSNKPN  VS G IPVTT+ PP+ VPAFAI P RAG+ +     N    K
Sbjct:   86 GQSTFRSTGIDSGGGDNQTGSAGWCGAGRAARDFSAEGAGEKYFGLRLKIPADKLAATLQRLVEEDGSLLEP---LPPLCGIDVSPGYPGVIKAKGTFGLD-EGRVVLRVHNSNKPNVCVSEGAIPVTTRTPPFKVPAFAIGPPRAGKLMLRNQNNANALK 242
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BLAST of mRNA_C-linearis_contig104.896.1 vs. uniprot
Match: A0A6H5JI61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI61_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.620e-15
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 2 
Query:  437 STDVAPGYRGRTKGKGRFGLTKDGSLVLGVHNSNKPNSFVSGGTIPVTTKGPPYAVPAFAIAPLRAGRFVSTKVYNETERK 679
            S    PGY G T+ KG+FGL  +G +VL VHNSNKPN  VS G IPVTT+ PP+ VPAFAI PLRAG+ +     N    K
Sbjct:  214 SDTQTPGYPGVTRAKGKFGLD-EGRVVLRVHNSNKPNVCVSEGAIPVTTRTPPFTVPAFAIGPLRAGKVIIRNQSNANALK 293
[Close]
BLAST of mRNA_C-linearis_contig104.896.1 vs. uniprot
Match: D8LFC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC5_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 4.780e-9
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 2 
Query:  248 GVGKPFNSGAGAAARDFSREGAGKKYYGLHVDVPMIKLAAELARLVQEDGSLLE 409
            GVGKP NSG G AARDFS EG+G++YYGLH+ +P   L A+L  LVQ DGSL E
Sbjct:  386 GVGKPSNSGDGHAARDFSEEGSGERYYGLHLALPTKDLRAQLPLLVQPDGSLKE 439
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G8P5_ECTSI1.240e-4655.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKS4_ECTSI1.620e-3954.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI61_9PHAE1.620e-1555.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFC5_ECTSI4.780e-964.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:350518..351437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size920
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.896.1prot_C-linearis_contig104.896.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 350867..351220 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927386.7947857-UTR-C-linearis_contig104:350517..3508661622927386.7947857-UTR-C-linearis_contig104:350517..350866Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 350518..350866 +
1690879669.8596382-UTR-C-linearis_contig104:350517..3508661690879669.8596382-UTR-C-linearis_contig104:350517..350866Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 350518..350866 +
1622927386.8232145-UTR-C-linearis_contig104:351220..3514371622927386.8232145-UTR-C-linearis_contig104:351220..351437Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 351221..351437 +
1690879669.8787203-UTR-C-linearis_contig104:351220..3514371690879669.8787203-UTR-C-linearis_contig104:351220..351437Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 351221..351437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927386.811068-CDS-C-linearis_contig104:350866..3512201622927386.811068-CDS-C-linearis_contig104:350866..351220Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 350867..351220 +
1690879669.8707738-CDS-C-linearis_contig104:350866..3512201690879669.8707738-CDS-C-linearis_contig104:350866..351220Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 350867..351220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.896.1

>prot_C-linearis_contig104.896.1 ID=prot_C-linearis_contig104.896.1|Name=mRNA_C-linearis_contig104.896.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=118bp
MIKLAAELARLVQEDGSLLEEEGKLLPLCSTDVAPGYRGRTKGKGRFGLT
KDGSLVLGVHNSNKPNSFVSGGTIPVTTKGPPYAVPAFAIAPLRAGRFVS
TKVYNETERKLAKSNQG*
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mRNA from alignment at C-linearis_contig104:350518..351437+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.896.1 ID=mRNA_C-linearis_contig104.896.1|Name=mRNA_C-linearis_contig104.896.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=920bp|location=Sequence derived from alignment at C-linearis_contig104:350518..351437+ (Chordaria linearis ClinC8C monoicous)
ACCCTTCAAATGCAATGCTTATGTTGTTGTTTTTGTCGTCGCCATGAGCT
CTGCTTCTTTCATAACGCCCACATTAGTCGAATACATACGTAAATATACC
ATAACCTGTTCACGGTGTACGATGCCACAAAATGCGGGCATTTGACCCTT
TGAGTGAAATGGCGCTTGACGCGGACAACAAGTTAGACCTCACGTCGGTT
ACCCGTCCTGTTCATCAGGTAGAATCGGTGCTTCTCCCGGCCTCAATGGA
GTCGGCAAGCCGTTTAACAGCGGCGCCGGGGCCGCCGCGCGGGACTTCAG
CCGCGAGGGTGCGGGCAAGAAGTACTACGGACTCCACGTGGATGTTCCGA
TGATAAAACTCGCAGCGGAACTGGCACGCTTGGTGCAGGAGGACGGGAGT
CTGCTCGAAGAAGAAGGAAAACTGCTCCCGCTCTGTAGCACGGACGTCGC
ACCCGGCTACCGCGGCCGCACCAAGGGGAAAGGGCGATTTGGCCTGACCA
AGGACGGCAGCCTAGTGTTGGGCGTCCACAACAGCAACAAGCCCAACTCG
TTCGTGAGCGGGGGAACTATCCCCGTCACGACCAAAGGGCCGCCCTACGC
GGTACCAGCCTTCGCGATCGCTCCCCTGCGGGCGGGCAGGTTTGTGAGTA
CCAAGGTCTACAATGAGACGGAGAGGAAGCTCGCGAAGTCGAACCAGGGG
TAGACGGTGGCGTGTTCCCGAGCTACTACGCGCATCGCGTGGCCCCGGAG
ATTCAGTGGCATGTGTGGGTATTGTGATAGTCACCTACCCCATCACTTTT
GCTCCGGGTATGGGGTACAAAGAGAGAGAGAGAGTTTCAACTTGAATGTA
TGTAGACTATTATGATACGTATCTCGTCATCAATTTTTCCATTGCGTAGA
TTTTACAAAGTAGTAGGTCG
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Coding sequence (CDS) from alignment at C-linearis_contig104:350518..351437+

>mRNA_C-linearis_contig104.896.1 ID=mRNA_C-linearis_contig104.896.1|Name=mRNA_C-linearis_contig104.896.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at C-linearis_contig104:350518..351437+ (Chordaria linearis ClinC8C monoicous)
ATGATAAAACTCGCAGCGGAACTGGCACGCTTGGTGCAGGAGGACGGGAG
TCTGCTCGAAGAAGAAGGAAAACTGCTCCCGCTCTGTAGCACGGACGTCG
CACCCGGCTACCGCGGCCGCACCAAGGGGAAAGGGCGATTTGGCCTGACC
AAGGACGGCAGCCTAGTGTTGGGCGTCCACAACAGCAACAAGCCCAACTC
GTTCGTGAGCGGGGGAACTATCCCCGTCACGACCAAAGGGCCGCCCTACG
CGGTACCAGCCTTCGCGATCGCTCCCCTGCGGGCGGGCAGGTTTGTGAGT
ACCAAGGTCTACAATGAGACGGAGAGGAAGCTCGCGAAGTCGAACCAGGG
GTAGATGATAAAACTCGCAGCGGAACTGGCACGCTTGGTGCAGGAGGACG
GGAGTCTGCTCGAAGAAGAAGGAAAACTGCTCCCGCTCTGTAGCACGGAC
GTCGCACCCGGCTACCGCGGCCGCACCAAGGGGAAAGGGCGATTTGGCCT
GACCAAGGACGGCAGCCTAGTGTTGGGCGTCCACAACAGCAACAAGCCCA
ACTCGTTCGTGAGCGGGGGAACTATCCCCGTCACGACCAAAGGGCCGCCC
TACGCGGTACCAGCCTTCGCGATCGCTCCCCTGCGGGCGGGCAGGTTTGT
GAGTACCAAGGTCTACAATGAGACGGAGAGGAAGCTCGCGAAGTCGAACC
AGGGGTAG
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