mRNA_C-linearis_contig104.895.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.895.1
Unique NamemRNA_C-linearis_contig104.895.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig104.895.1 vs. uniprot
Match: D7G3R8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3R8_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 5.330e-13
Identity = 38/57 (66.67%), Postives = 42/57 (73.68%), Query Frame = 2 
Query:   56 MAHPETTPTKRGSDDNWKTTPREDAFESPGEPRKASTRRPPLSPASPNTGRTPPGAR 226
            M HP+ TP KRGS D+W T     AF+SP +PR ASTRRPP SP SPNTGRTPP AR
Sbjct:    1 MGHPKNTPRKRGSQDDWTTPLGNYAFDSPVKPRNASTRRPPFSPTSPNTGRTPPRAR 57
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3R8_ECTSI5.330e-1366.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:344271..346400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size233
Cds size231
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.895.1prot_C-linearis_contig104.895.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 344271..346400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927386.734308-CDS-C-linearis_contig104:344270..3443181622927386.734308-CDS-C-linearis_contig104:344270..344318Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 344271..344318 +
1690879669.8284209-CDS-C-linearis_contig104:344270..3443181690879669.8284209-CDS-C-linearis_contig104:344270..344318Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 344271..344318 +
1622927386.7504628-CDS-C-linearis_contig104:346043..3461221622927386.7504628-CDS-C-linearis_contig104:346043..346122Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 346044..346122 +
1690879669.839151-CDS-C-linearis_contig104:346043..3461221690879669.839151-CDS-C-linearis_contig104:346043..346122Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 346044..346122 +
1622927386.7615056-CDS-C-linearis_contig104:346296..3464001622927386.7615056-CDS-C-linearis_contig104:346296..346400Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 346297..346400 +
1690879669.8493063-CDS-C-linearis_contig104:346296..3464001690879669.8493063-CDS-C-linearis_contig104:346296..346400Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 346297..346400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.895.1

>prot_C-linearis_contig104.895.1 ID=prot_C-linearis_contig104.895.1|Name=mRNA_C-linearis_contig104.895.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=77bp
PQITTITTTHQRIRVQDRDGTSRDYANEAGVRRQLEDYTTRRCLRITRGA
EKGIHSTPSTFPRLAQHRQNASRSTGK
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mRNA from alignment at C-linearis_contig104:344271..346400+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.895.1 ID=mRNA_C-linearis_contig104.895.1|Name=mRNA_C-linearis_contig104.895.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2130bp|location=Sequence derived from alignment at C-linearis_contig104:344271..346400+ (Chordaria linearis ClinC8C monoicous)
CCGCAGATAACAACCATCACTACGACCCACCAACGAATAAGAGTGCAGGT
GAGCAGGGCAGTGTGGCTTTCCGCCTCCCTGCATTCCGCGCATGAGGGAG
AGGTTCACTTGGATGACACACACACAGACAGAGAGAGATAGAGAGAGACA
GAGCGAGCGAAGGGAGTTAAAGAGTTTCTTTCGCTACAAAGCAGATTCTT
CGCTGAGGGATCTGTGTATGTGTGATGCAACAGCAGTCGCGAGGCCGCAC
ACCCGCGTGTCCAGCCGAAACGAGCTGTTGTCCTGATGGTTCATCTGGTA
CTCTTCTCGAGGGGTTGTCACATCAGCACGTTGCCCTGCTCATAGGCTGC
ACTCGCAGCAGCGATCATGAACACAGTTGAATCAAATAAATGTGCATGTC
GGTCGGAGATGTTCCTGGCTTCAACGACGCTTCCCGTGGTGATTGGATCT
CTTGTGCCGTAGCACCCAGTTAAAAAGCCCACCCAGCAGTGCTCTGAGAG
TTCAGGGGGAGACTATGACGACCTCGGTTTGCTCCTTTACAAATCAAAAG
GCCGGGTGTGTGTCGTCCTCCAGCCTGCACATCTACGTGTATTTTCGCAG
CGTAGTAGATTCGGCTGTTCTTGTCACACATCCCGAAGAGCGCACCACCA
AGTGTGTGCTCGACAAGGGGTTGGCAACCGTTCGTTGCCCTGCTCAAGTT
TTGCCCTCGGTATTCATAGCTGCAGAAGCTTCAGCTCGAGGCCCCTCGGT
GAACAGGTGATTTCGTAGTACCGTCCCGTTCTCCCCTCGCTCGGTCTGTC
TCTCTGTCCGTCTATCTGTCTGCCCTCTCTGTCTCCCTCTTCGTTTCTCT
CCATGCACAACTTTAACTTTTCCCCCGTGGCTTGAAGTCGAACTTACGCT
TTCACTGCAGCAGCACAGCCCCGGTACCACAATGGTTTGAACAGGGCTTG
GAACGTATCACCACGAGAAGATGACAATTCTGCACTTCTCCGCCAAACTT
GTTGCGTGAACAACATTCATTTACACTGGGTCAACCCAGACTGTCCTGTA
GCGATGAGGGGCGGTTTCGAATATAAAATCATTCTCTGTCTCCCTCTTCG
TTTCTCTCCATGCACAACTTTTCCCCCGTGGCTTGAAGTCGAACTTACGC
TTTCACTGCAGCAGCACAGCCCCGGTACCACAATGGTTTGAACAGGGCTT
GGAACGTATCACCACGAGAAGATGACAATTCTGCACTTCTCCGCCAAACT
TGTTGCGTGAACAACATTCATTTACACTGGGTCAACCCAGACTGTCCTGT
AGCGATGAGGGGCGGTTTCGAATATAAAATCATTCTCTGTCTCCCTCTTC
GTTTCTCTCCATGCACAACTTTTCCCCCGTGGCTTGAAGTCGAACTTACG
CTTTCACTGCAGCAGCACAGCCCCGGTACCACAATGGTTTGAACAGGGCT
TGGAACGTATCACCACGAGAAGATGACAATTCTGCACTTCTCCGCCAAAC
TTGTTGCGTGAACAACATTCATTTACACTGGGTCAACCCAGACTGTCCTG
TAGCGATGAGGGGCGGTTTCGAATATAAAATCACTTCAACTGTTGACCAA
GTGCTGCATGTAGTCAAACACATTGAGGGGCGCCGATCCCATTCACTGGG
CTCCACGAGCCCATTCACTAGACTCCACTCACATCCAGCGAAACTGGATG
GACAACAACGCCCGTCGACGAAACTGAATGCTGTTTGCTTCCGCGCATCC
GACTGCCTGCTTTCAAACACCAGGACCGCGATGGCACATCCCGAGACTAC
GCCAACGAAGCGGGGGTCAGACGACAACTGGAAGACTACACCACGCGAAG
ATGTAAGAGCGGCGAATGGTACACAGACGCACATAGCCTCTACGCGGCTT
GTGGTGCTCACATCGTGTCTTCAAAACTCCCCGAGATCTTCGCTGTACTC
AACAGACATACACAGTCCGCTTACGACATTCACGGTACCCCCCCCCGTGT
GCACCTTCTTATCTTGCATCCAATAGGCCTTCGAATCACCCGGGGAGCCG
AGAAAGGCATCCACTCGACGCCCTCCACTTTCCCCCGCCTCGCCCAACAC
AGGCAGAACGCCTCCCGGAGCACGGGTAAG
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Coding sequence (CDS) from alignment at C-linearis_contig104:344271..346400+

>mRNA_C-linearis_contig104.895.1 ID=mRNA_C-linearis_contig104.895.1|Name=mRNA_C-linearis_contig104.895.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at C-linearis_contig104:344271..346400+ (Chordaria linearis ClinC8C monoicous)
CCGCAGATAACAACCATCACTACGACCCACCAACGAATAAGAGTGCAGCC
GCAGATAACAACCATCACTACGACCCACCAACGAATAAGAGTGCAGGACC
GCGATGGCACATCCCGAGACTACGCCAACGAAGCGGGGGTCAGACGACAA
CTGGAAGACTACACCACGCGAAGATGACCGCGATGGCACATCCCGAGACT
ACGCCAACGAAGCGGGGGTCAGACGACAACTGGAAGACTACACCACGCGA
AGATGCCTTCGAATCACCCGGGGAGCCGAGAAAGGCATCCACTCGACGCC
CTCCACTTTCCCCCGCCTCGCCCAACACAGGCAGAACGCCTCCCGGAGCA
CGGGTAAGGCCTTCGAATCACCCGGGGAGCCGAGAAAGGCATCCACTCGA
CGCCCTCCACTTTCCCCCGCCTCGCCCAACACAGGCAGAACGCCTCCCGG
AGCACGGGTAAG
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