mRNA_C-linearis_contig104.894.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.894.1
Unique NamemRNA_C-linearis_contig104.894.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig104.894.1 vs. uniprot
Match: D8LEA9_ECTSI (FYVE-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEA9_ECTSI)

HSP 1 Score: 708 bits (1828), Expect = 1.040e-249
Identity = 395/558 (70.79%), Postives = 437/558 (78.32%), Query Frame = 1 
Query:   55 MMTASFGYDTSSSMSLLPP-DGAAAPSQDSAVDEKAKAQEPARFSEE-----------QQQEQRGVPGRQLMEDRWPGAEETPF--IPSG--SSGSPTLARPSRNDRDGMMDGDLR-RAQLGMGMGRAPRLGEQPPLDPFAMERPPVLSANGGGAAAQGRGTIGAGEIRAKPP-----ARKAWKMSTTKPTPSFSSTPVGAAAAVDPANNGKQRGAGVAAAG---------VGLTPPKWLPDENTLSCSGCGKDFDWIRRRHHCRLCGGIFCYACSQFRALLPRSFGSRDPQRLCQPCNARAAPLQEMLAAESMSNAVKENDVEQGTLASYLNRPIAFTLGAEVRKAAYTVHNFTKEGMIQDQSIPQELLSHAKGLAFLTVIKGGFIVAGRVGTGLVVAKTEEGVWSAPSAIATVGMGWGALIGGDITDFVLVLNTEAALEAFSGRGQVSIGAELSVAVGPLGRTGAGNVSVAAEGVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEALENRGSAANQERLLSQGFRVG 1635
            MMTA+FG +++SSMSLLPP +G+     D+  D     +E AR  EE           Q+ EQ+ VPGRQLMEDRWP  + +    +P G  S GSP +A    N      +GD       G G      L EQPP DPFAMERPP+ +   GG  A G      GEIRAKPP     AR+ W ++TTKP+P  SST VGA  A +   +   +G GVA  G         VGL PPKWLPDE+T SCSGCG+DFDW RRRHHCRLCGGIFCYACSQFRALLPRSFGSRDPQRLCQPCNAR APLQEMLA ES+SNAVKENDVE+GT+ASYLNRPI FTLGAEVRKAAYT+HNF+KEGMIQDQSIPQELLS AKGLAFLTVIKGGFIVAGRVGTGLV++KT+EGVWSAPSAIAT+GMGWGALIGG+ITDFVLVLNT+AALEAFSGRGQVSIGAELSVAVGP+GRTGAGNVSVAAEGVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVR+LLSGSVAPPPAARPLYEAL+NRG  A+Q+RLLSQGFRVG
Sbjct:    1 MMTAAFGDESASSMSLLPPIEGSGG---DTGEDVDGNPREAARLLEEENPHHQPSYNGQRHEQQDVPGRQLMEDRWPSGQYSSLTTVPPGGASGGSPNVAWQDPNTTTSAGEGDSDGMVTPGQGQAGLAPLDEQPPPDPFAMERPPIANGGRGGGGAVG------GEIRAKPPVAPRPARREWNLTTTKPSPKLSSTAVGATGAANGHISSDGKGVGVAGVGGGSVAGGGGVGLKPPKWLPDEDTSSCSGCGRDFDWARRRHHCRLCGGIFCYACSQFRALLPRSFGSRDPQRLCQPCNARVAPLQEMLA-ESVSNAVKENDVERGTVASYLNRPIVFTLGAEVRKAAYTIHNFSKEGMIQDQSIPQELLSRAKGLAFLTVIKGGFIVAGRVGTGLVISKTDEGVWSAPSAIATLGMGWGALIGGEITDFVLVLNTDAALEAFSGRGQVSIGAELSVAVGPVGRTGAGNVSVAAEGVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRDLLSGSVAPPPAARPLYEALDNRGPGADQQRLLSQGFRVG 548
[Close]
BLAST of mRNA_C-linearis_contig104.894.1 vs. uniprot
Match: A0A835Z286_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z286_9STRA)

HSP 1 Score: 357 bits (915), Expect = 2.120e-113
Identity = 192/355 (54.08%), Postives = 238/355 (67.04%), Query Frame = 1 
Query:  661 LTPPKWLPDENTLSCSGCGKDFDWIRRRHHCRLCGGIFCYACSQFRALLPRSFGSRDPQRLCQPCNARAAPLQEMLAAESMSNAVKENDV---EQGTLASYLNRPIAFTLGAEVRKAAYTVHNFTKEGMIQDQSIPQELLSHAKGLAFLTVIKGGFIVAGRVGTGLVV-------------AKTEEG---------------------------------VWSAPSAIATVGMGWGALIGGDITDFVLVLNTEAALEAFSGRGQVSIGAELSVAVGPLGRTGAGNVSVAAEG-VAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEAL 1575
            +TPP+W+PDE+ L+C  C K FDW RR+HHCR CGGIFC +CS++++LLPRSFG+RDPQR+C+ CNA  A LQE L A ++SNAVK N V   E+  L+ YLN+P++FTLGAEVRKAAY+V NF + G++QD SIP ELL+ AKGLAF+TV+K G    G  GTGLV+             A   +G                                  WSAPSAI TVGMGWGA IG ++TD VLVL T AA+EAF     VS+GA + VA GP+GR+GAG V+++ E  VA   SYSHSRGLFAG+SLEG VI +RPDVNR FYGR +  ++LL+G   PPPAA PLYEAL
Sbjct:   83 ITPPRWIPDEDVLACVKCNKAFDWARRKHHCRCCGGIFCASCSKYQSLLPRSFGTRDPQRVCKACNASLAHLQEHLQA-TLSNAVKANQVSKSEKPGLSPYLNKPLSFTLGAEVRKAAYSVLNFMRTGVVQDNSIPTELLARAKGLAFMTVLKAGCFWTGSFGTGLVISRLPAERCCHPSAASLSDGDSAAAPEQXXPLSVAAAAYGSSAQLMRRPPRRLEWSAPSAIGTVGMGWGAAIGANVTDVVLVLTTNAAVEAFCAT-NVSLGAGIGVAAGPIGRSGAGAVTISTESDVAPVLSYSHSRGLFAGISLEGAVIAARPDVNRAFYGRDIGAKQLLAGEAPPPPAAAPLYEAL 435
[Close]
BLAST of mRNA_C-linearis_contig104.894.1 vs. uniprot
Match: A0A835YJX3_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJX3_9STRA)

HSP 1 Score: 350 bits (897), Expect = 1.830e-112
Identity = 180/313 (57.51%), Postives = 221/313 (70.61%), Query Frame = 1 
Query:  649 AGVGLTPPKWLPDENTLSCSGCGKDFDWIRRRHHCRLCGGIFCYACSQFRALLPRSFGSRDPQRLCQPCNARAAPLQEMLAAESMSNAVKENDVEQGT---LASYLNRPIAFTLGAEVRKAAYTVHNFTKEGMIQDQSIPQELLSHAKGLAFLTVIKGGFIVAGRVGTGLVVAKTEEGVWSAPSAIATVGMGWGALIGGDITDFVLVLNTEAALEAFSGRGQVSIGAELSVAVGPLGRTGAGNVSVAAEG-VAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEAL 1575
            A  GL PP+W PD   ++C  CG+ FDW RR+HH               +ALLPRSFG+RDPQR+C  C     PLQ  L   + SNAV+ N+V  G    L+ YLN+P++FTLGAEVRKAAY+V NF + G++QD SIP ELL+ AKGLAF+TV+K G +  G  GTGLV        WSAPSAI T+GMGWGA IG +ITD VLVLNT AA+EAF G GQ+S+GA + +A GP+GR+GAG V++  +G VA   SYSHSRGLFAG+SLEG VI +RPDVNR FYG+ V+ ++LLSG V PPPAA PLYEAL
Sbjct:    2 AAAGLAPPRWTPDAQAVNCHNCGRLFDWARRKHHXXXXXXXXXXXXXXXQALLPRSFGTRDPQRVCDECKTTLEPLQADLI-NTFSNAVRANEVANGAKRGLSPYLNKPLSFTLGAEVRKAAYSVFNFMRAGVVQDSSIPTELLTCAKGLAFITVLKAGVVWVGNFGTGLVQCHLLSTEWSAPSAIGTIGMGWGACIGANITDVVLVLNTAAAVEAFCGAGQMSLGAGIGMAAGPIGRSGAGGVTIGTDGDVAPVLSYSHSRGLFAGISLEGAVIAARPDVNRAFYGKDVTAKQLLSGEVDPPPAAAPLYEAL 313
[Close]
BLAST of mRNA_C-linearis_contig104.894.1 vs. uniprot
Match: A0A485KLR6_9STRA (Aste57867_8862 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLR6_9STRA)

HSP 1 Score: 344 bits (882), Expect = 6.450e-109
Identity = 176/344 (51.16%), Postives = 233/344 (67.73%), Query Frame = 1 
Query:  673 KWLPDENTLSCSGCGKDFDWIRRRHHCRLCGGIFCYACSQFRALLPR------------SFGSRDPQRLCQPCNARAAPLQEMLAAESMSNAVKENDVEQGTLASYLNRPIAFTLGAEVRKAAYTVHNFTKEGMIQDQSIPQELLSHAKGLAFLTVIKGGFIVAGRVGTGLVVAKTEEGVWSAPSAIATVGMGWGALIGGDITDFVLVLNTEAALEAFSGRGQVSIGAELSVAVGPLGRTGAGNVSVAAEGVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEALE----------NRGSAANQERL-LSQGFRVG 1635
            +W+PDE    C  CG  FDW+RR+HHCR CG +FC  C+  R+++              S  +  PQR+C+PC+    P Q +L  E+ SNAV+ N + +     +LN P +FTL  EVRKAAY+V NF  +G+I+DQSIP  LL++A+G+AFLTV+K GF+V GR+GTGLV++K  +G WSAPSAI T G+GWGA +GG++TDFV++LNT AA++ F  +GQV++GAEL VA GPLGR  AG++     G+A  YSYSHS+GLF G+SLEG VIV+RPDVNR+FYGR ++  ELLSG   PP AA PLY+ALE          NR +A    R  LSQ   +G
Sbjct:   35 RWIPDEEVSLCKSCGLLFDWVRRKHHCRYCGQVFCDLCTTHRSMIREDKILTAPTKRYLSVSAYSPQRVCEPCHNVLMPDQAILR-ETASNAVQPNSINEAGSKRFLNSPYSFTLREEVRKAAYSVKNFMLDGLIKDQSIPLPLLTNAQGIAFLTVLKVGFVVTGRLGTGLVLSKLADGSWSAPSAIGTAGIGWGAQVGGEVTDFVIILNTRAAVDTFCAQGQVNLGAELGVAAGPLGRVAAGSMEAGPGGIAPCYSYSHSKGLFIGISLEGSVIVARPDVNREFYGRDITAAELLSGQERPPVAAMPLYDALEAVALSPANALNRQAAVAAARYSLSQSMSLG 377
[Close]
BLAST of mRNA_C-linearis_contig104.894.1 vs. uniprot
Match: A0A067CDH3_SAPPC (FYVE-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CDH3_SAPPC)

HSP 1 Score: 340 bits (873), Expect = 4.440e-108
Identity = 174/345 (50.43%), Postives = 233/345 (67.54%), Query Frame = 1 
Query:  664 TPPKWLPDENTLSCSGCGKDFDWIRRRHHCRLCGGIFCYACSQFRALL--------PR----SFGSRDPQRLCQPCNARAAPLQEMLAAESMSNAVKENDVEQGTLASYLNRPIAFTLGAEVRKAAYTVHNFTKEGMIQDQSIPQELLSHAKGLAFLTVIKGGFIVAGRVGTGLVVAKTEEGVWSAPSAIATVGMGWGALIGGDITDFVLVLNTEAALEAFSGRGQVSIGAELSVAVGPLGRTGAGNVSVAAEGVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEALE----------NRGSAANQERLLSQGFRV 1632
            T  +W+PD     C  CG  FDW+RR+HHCR CG +FC  C+ FR+L+        P     S  + +PQR+C+PC     P Q +L A + SNAV+ N + +     +LN P +FTL  E+RKAAY+V NF  +G+I+DQSIP  LL++AKG+AFLTV+K GF+V GRVGTGLV+AK  +G WSAPSAIAT G+GWGA IGG +TDFV++LNT +A++ F  +GQV++GAEL VA GPLGR  AG +     G+A  YSYSHS+GLF G+S+EG V+++RPDVN +FYG++V+  +LLSG   PP AA+PLY+AL           NRGS + +    S   R+
Sbjct:   20 TTIRWIPDAEVSLCKACGLLFDWVRRKHHCRYCGHVFCDLCTTFRSLIRDDKILTSPEKRYLSVNAYNPQRVCEPCYTLLLPDQSLLCATA-SNAVQPNSISEAGSKRFLNSPYSFTLREEIRKAAYSVKNFMYDGVIKDQSIPLPLLTNAKGIAFLTVLKVGFVVTGRVGTGLVIAKLPDGSWSAPSAIATAGIGWGAQIGGGVTDFVIILNTRSAVDTFCAQGQVNMGAELGVAAGPLGRVAAGAMEAGPGGIAPCYSYSHSKGLFIGISVEGSVVLARPDVNLEFYGKEVTAADLLSGRERPPVAAQPLYDALTMAVESPANGLNRGSLSTRAASYSSSQRL 363
[Close]
BLAST of mRNA_C-linearis_contig104.894.1 vs. uniprot
Match: A0A5D6Y5S5_9STRA (FYVE-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5S5_9STRA)

HSP 1 Score: 339 bits (870), Expect = 8.140e-108
Identity = 172/317 (54.26%), Postives = 222/317 (70.03%), Query Frame = 1 
Query:  664 TPPKWLPDENTLSCSGCGKDFDWIRRRHHCRLCGGIFCYACSQFRALLPR------------SFGSRDPQRLCQPCNARAAPLQEMLAAESMSNAVKENDVEQGTLASYLNRPIAFTLGAEVRKAAYTVHNFTKEGMIQDQSIPQELLSHAKGLAFLTVIKGGFIVAGRVGTGLVVAKTEEGVWSAPSAIATVGMGWGALIGGDITDFVLVLNTEAALEAFSGRGQVSIGAELSVAVGPLGRTGAGNVSVAAE-GVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEAL 1575
            T  +W+PD     C GC   FDW+RR+HHCR CG +FC  C+  R+L+P             S  + +PQR+C  C     P Q  L   +MSNAV+EN++++     +LN P +FTL  E+RKAAY+V NF  +G+I+DQSIP  LL+HAKG+AFLTVIK GF+  GRVGTGLV+A+  +G WSAPSAIAT G+GWGA IGG+ITDFV+VLNT+ A++AF  +GQV++GAEL V+ GP+GR  AG V  +A+  VA  YSYSHS+GLF GLSLEG +I++RPD+NR FYGR V V ELL G   PP  A PLY+A+
Sbjct:   13 TTVRWIPDAEVSLCFGCQLLFDWVRRKHHCRFCGHVFCDLCTPRRSLIPADQILANPERQYLSVNAHNPQRVCDDCFNALLPAQAELRG-TMSNAVQENELDEAGAKRFLNSPYSFTLREEIRKAAYSVKNFMYQGVIKDQSIPLPLLTHAKGIAFLTVIKVGFVFTGRVGTGLVIARLPDGRWSAPSAIATAGVGWGAQIGGEITDFVIVLNTKRAVDAFCSKGQVNLGAELGVSAGPVGRVAAGAVEASADLAVAPCYSYSHSKGLFVGLSLEGSMILARPDINRAFYGRDVQVAELLGGMEPPPVGATPLYDAI 328
[Close]
BLAST of mRNA_C-linearis_contig104.894.1 vs. uniprot
Match: A0A1V9Z795_9STRA (FYVE-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z795_9STRA)

HSP 1 Score: 339 bits (870), Expect = 1.330e-107
Identity = 165/313 (52.72%), Postives = 221/313 (70.61%), Query Frame = 1 
Query:  673 KWLPDENTLSCSGCGKDFDWIRRRHHCRLCGGIFCYACSQFRALLPR------------SFGSRDPQRLCQPCNARAAPLQEMLAAESMSNAVKENDVEQGTLASYLNRPIAFTLGAEVRKAAYTVHNFTKEGMIQDQSIPQELLSHAKGLAFLTVIKGGFIVAGRVGTGLVVAKTEEGVWSAPSAIATVGMGWGALIGGDITDFVLVLNTEAALEAFSGRGQVSIGAELSVAVGPLGRTGAGNVSVAAEGVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEAL 1575
            +W+PD     C  CG  FDW+RR+HHCR CG +FC  C+ FR+L+              S  + +PQR+C+PC     P Q +L  E+ SNAV+ N + +     +LN P +FTL  E+RKAAY+V NF  +G+I+DQSIP  LL++AKG+AFLTV+K GF+V GRVGTGLV+AK  +G WSAPSAIAT G+GWGA IGG +TDFV++LNT +A++ F  +GQV++GAEL VA GPLGR  AG +     G+A  YSYSHS+GLF G+S+EG ++V+RPDVN +FYG++V+  +LLSG    P AA+PLY+AL
Sbjct:   21 RWIPDAEVSLCKACGLLFDWVRRKHHCRYCGHVFCDLCTNFRSLIREDKILTSPEKRYLSVNAYNPQRVCEPCYTILLPDQSLLC-ETSSNAVQPNSITEAGSKRFLNSPYSFTLREEIRKAAYSVKNFMYDGLIKDQSIPLPLLTNAKGIAFLTVLKVGFVVTGRVGTGLVIAKLPDGTWSAPSAIATAGIGWGAQIGGGVTDFVIILNTRSAVDTFCAQGQVNMGAELGVAAGPLGRVAAGAMEAGPGGIAPCYSYSHSKGLFIGISIEGSIVVARPDVNMEFYGKEVTAAQLLSGQERRPVAAQPLYDAL 332
[Close]
BLAST of mRNA_C-linearis_contig104.894.1 vs. uniprot
Match: A0A6V1LWE2_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LWE2_HETAK)

HSP 1 Score: 340 bits (871), Expect = 1.200e-106
Identity = 177/338 (52.37%), Postives = 239/338 (70.71%), Query Frame = 1 
Query:  652 GVGLTPPKWLPDENTLSCSGCGKDFDWIRRRHHCRLCGGIFCYACSQFRALLPRSFGSRDPQRLCQPCNARAAPLQEMLAAESMSNAVKENDVEQGT-LASYLNRPIAFTLGAEVRKAAYTVHNFTKE---------GMIQDQSIPQELLSHAKGLAFLTVIKGGFIVAGRVGTGLVVAKTEEGVWSAPSAIATVGMGWGALIGGDITDFVLVLNTEAALEAFSGRGQVSIGAELSVAVGPLGRTGAGNVSVAAEGVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEALENRGSAANQERLLSQGFRVG 1635
            GVG  P +W+PDE    C+ C   FDW  R+HHCR CG IFC +CS+ +ALLP+ F  RDP+R+C PC     PLQ+ L A +MSN+++EN ++  + L  +++ P + TLGA VRKAA+T+ N T           G+++DQSIP E L  A+GLAFLTV K GF++AG+ GTGLVVA+  +G W+APSAIATVG+ WG LIGG+ITD+V++LNT+ A+EAFSGRGQV++GAEL  A+GP+GR   GN+++   GVA  Y+YSHS+GLF G+SLEG VI +R D+N+KFYG+ V    LL+G V  P AA+PLY+ALE   +A      +++  RVG
Sbjct:  120 GVGALP-RWVPDEEVTHCTQCQVMFDWAVRKHHCRACGRIFCQSCSENKALLPKEFCDRDPKRVCDPCFRALQPLQDELVA-TMSNSIRENHIDPNSALERHVHNPFSTTLGACVRKAAHTILNMTDTHTTDHINGMGVVKDQSIPIEYLRRARGLAFLTVAKMGFVLAGKAGTGLVVARRPDGGWTAPSAIATVGVNWGLLIGGEITDYVILLNTQKAVEAFSGRGQVTLGAELGAALGPVGRNAGGNLALGDGGVAPTYTYSHSKGLFVGVSLEGTVIAARADMNQKFYGQPVLASNLLNGVVPNPRAAQPLYDALETACAAQAPRNAITE--RVG 453
[Close]
BLAST of mRNA_C-linearis_contig104.894.1 vs. uniprot
Match: A0A833RX76_PHYIN (Las17-binding protein actin regulator n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833RX76_PHYIN)

HSP 1 Score: 333 bits (854), Expect = 3.950e-105
Identity = 171/330 (51.82%), Postives = 228/330 (69.09%), Query Frame = 1 
Query:  664 TPPKWLPDENTLSCSGCGKDFDWIRRRHHCRLCGGIFCYACSQFRALLPR------------SFGSRDPQRLCQPCNARAAPLQEMLAAESMSNAVKENDVEQGTLASYLNRPIAFTLGAEVRKAAYTVHNFTKEGMIQDQSIPQELLSHAKGLAFLTVIKGGFIVAGRVGTGLVVAKTEEGVWSAPSAIATVGMGWGALIGGDITDFVLVLNTEAALEAFSGRGQVSIGAELSVAVGPLGRTGAGNVSVAAE-GVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEAL----ENRGSAANQ 1602
            T  +W+PD     C GC   FDW+RR+HHCR CG +FC  C+  R+L+              +  + +PQR+C  C+AR  P QE L   +MS+AV++ +V++     + N P +FTL  E+RKA Y+V NFT +G+++DQSIP  LL+HAKG+AFLTVIK GF+  GR+GTGLVVAK  +G WSAPSAI T G+GWG  IGG+ITDFV++LNT+ A+EAF   GQV++GAEL ++ GP+GR  AG +  +A   VA  YSYSHS+GL+AG+SLEG VI+SRPD+NR FYG+ V+V ELL G   PP AA PLYEA+    E+  + AN+
Sbjct:   16 TTVRWIPDAEVSVCYGCQLLFDWVRRKHHCRYCGHVFCELCTPQRSLIREDQILTNPERKYLAVNAHNPQRVCDDCHARLEPEQEELR-RTMSHAVQQMEVKESGPQRFFNSPYSFTLREEIRKATYSVKNFTFQGVVKDQSIPLPLLTHAKGIAFLTVIKMGFVFTGRMGTGLVVAKLPDGRWSAPSAIGTAGLGWGPQIGGEITDFVIILNTQRAVEAFCASGQVNLGAELGISAGPVGRVAAGALEASASMDVAPCYSYSHSKGLYAGISLEGSVILSRPDINRSFYGKTVTVPELLGGVEPPPVAAAPLYEAIRTAMESPANGANR 344
[Close]
BLAST of mRNA_C-linearis_contig104.894.1 vs. uniprot
Match: K3X8G2_GLOUD (FYVE-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8G2_GLOUD)

HSP 1 Score: 331 bits (849), Expect = 6.800e-105
Identity = 168/317 (53.00%), Postives = 220/317 (69.40%), Query Frame = 1 
Query:  664 TPPKWLPDENTLSCSGCGKDFDWIRRRHHCRLCGGIFCYACSQFRALLPR------------SFGSRDPQRLCQPCNARAAPLQEMLAAESMSNAVKENDVEQGTLASYLNRPIAFTLGAEVRKAAYTVHNFTKEGMIQDQSIPQELLSHAKGLAFLTVIKGGFIVAGRVGTGLVVAKTEEGVWSAPSAIATVGMGWGALIGGDITDFVLVLNTEAALEAFSGRGQVSIGAELSVAVGPLGRTGAGNVSVAAE-GVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEAL 1575
            T  +W+PD     C GC   FDW+RR+HHCR CG +FC  C+  R+L+              S    +PQR+C  C     P+Q  L  E+MSNAV+ N++++     +LN P +FTL  E+RKAAY+V NF  +G+I+DQSIP  L++ A+G+AFLTVIK GF+  GRVGTGLVVA+  +G WSAPSAIAT G+GWGA IGG+ITDFV++LNT+ A++AF  +GQV++GAEL V  GP+GR  +G +  +++  VA  YSYSHS+GLF G+SLEG +I+SRPDVNR FYGR V V ELL G   PP AA PLYEA+
Sbjct:   27 TTVRWIPDAEVSLCFGCKLLFDWVRRKHHCRYCGYVFCDLCTTHRSLIREDQILSNPERQYLSVNGHNPQRVCDECYNALLPVQAELR-ETMSNAVQHNNIDEAGPKRFLNSPYSFTLREEIRKAAYSVKNFMYQGVIKDQSIPLPLITQAQGIAFLTVIKVGFVFTGRVGTGLVVARLPDGRWSAPSAIATAGVGWGAQIGGEITDFVIILNTKRAVDAFCSKGQVNLGAELGVCAGPVGRVASGGMEASSDLAVAPCYSYSHSKGLFVGISLEGSMILSRPDVNRAFYGRDVQVTELLRGMEPPPVAASPLYEAI 342
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEA9_ECTSI1.040e-24970.79FYVE-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835Z286_9STRA2.120e-11354.08FYVE-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YJX3_9STRA1.830e-11257.51FYVE-type domain-containing protein n=1 Tax=Tribon... [more]
A0A485KLR6_9STRA6.450e-10951.16Aste57867_8862 protein n=1 Tax=Aphanomyces stellat... [more]
A0A067CDH3_SAPPC4.440e-10850.43FYVE-type domain-containing protein n=2 Tax=Saprol... [more]
A0A5D6Y5S5_9STRA8.140e-10854.26FYVE-type domain-containing protein n=1 Tax=Pythiu... [more]
A0A1V9Z795_9STRA1.330e-10752.72FYVE-type domain-containing protein n=1 Tax=Achlya... [more]
A0A6V1LWE2_HETAK1.200e-10652.37Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A833RX76_PHYIN3.950e-10551.82Las17-binding protein actin regulator n=1 Tax=Phyt... [more]
K3X8G2_GLOUD6.800e-10553.00FYVE-type domain-containing protein n=1 Tax=Globis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:312742..319580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score720.3
Seed ortholog evalue6.5e-205
Seed eggNOG ortholog2880.D8LEA9
KEGG koko:K20523
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of ruffle assembly
EggNOG OGsCOG2930@1,KOG1843@2759
Ec32 ortholog descriptionFYVE zinc finger
Ec32 orthologEc-00_001550.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons11
Model size1970
Cds size1584
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927386.3391924-UTR-C-linearis_contig104:312741..3127951622927386.3391924-UTR-C-linearis_contig104:312741..312795Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 312742..312795 +
1690879669.6727479-UTR-C-linearis_contig104:312741..3127951690879669.6727479-UTR-C-linearis_contig104:312741..312795Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 312742..312795 +
1622927386.5106552-UTR-C-linearis_contig104:319248..3195801622927386.5106552-UTR-C-linearis_contig104:319248..319580Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 319249..319580 +
1690879669.8042338-UTR-C-linearis_contig104:319248..3195801690879669.8042338-UTR-C-linearis_contig104:319248..319580Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 319249..319580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927386.3564806-CDS-C-linearis_contig104:312795..3128761622927386.3564806-CDS-C-linearis_contig104:312795..312876Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 312796..312876 +
1690879669.6833847-CDS-C-linearis_contig104:312795..3128761690879669.6833847-CDS-C-linearis_contig104:312795..312876Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 312796..312876 +
1622927386.3740966-CDS-C-linearis_contig104:314473..3145301622927386.3740966-CDS-C-linearis_contig104:314473..314530Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 314474..314530 +
1690879669.6920714-CDS-C-linearis_contig104:314473..3145301690879669.6920714-CDS-C-linearis_contig104:314473..314530Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 314474..314530 +
1622927386.3877711-CDS-C-linearis_contig104:314838..3151731622927386.3877711-CDS-C-linearis_contig104:314838..315173Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 314839..315173 +
1690879669.702412-CDS-C-linearis_contig104:314838..3151731690879669.702412-CDS-C-linearis_contig104:314838..315173Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 314839..315173 +
1622927386.402673-CDS-C-linearis_contig104:315513..3157301622927386.402673-CDS-C-linearis_contig104:315513..315730Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 315514..315730 +
1690879669.7121778-CDS-C-linearis_contig104:315513..3157301690879669.7121778-CDS-C-linearis_contig104:315513..315730Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 315514..315730 +
1622927386.4183102-CDS-C-linearis_contig104:316113..3162611622927386.4183102-CDS-C-linearis_contig104:316113..316261Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 316114..316261 +
1690879669.723056-CDS-C-linearis_contig104:316113..3162611690879669.723056-CDS-C-linearis_contig104:316113..316261Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 316114..316261 +
1622927386.4323974-CDS-C-linearis_contig104:316563..3167021622927386.4323974-CDS-C-linearis_contig104:316563..316702Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 316564..316702 +
1690879669.7315562-CDS-C-linearis_contig104:316563..3167021690879669.7315562-CDS-C-linearis_contig104:316563..316702Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 316564..316702 +
1622927386.4483812-CDS-C-linearis_contig104:317093..3171741622927386.4483812-CDS-C-linearis_contig104:317093..317174Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 317094..317174 +
1690879669.740147-CDS-C-linearis_contig104:317093..3171741690879669.740147-CDS-C-linearis_contig104:317093..317174Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 317094..317174 +
1622927386.46161-CDS-C-linearis_contig104:317644..3178261622927386.46161-CDS-C-linearis_contig104:317644..317826Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 317645..317826 +
1690879669.750642-CDS-C-linearis_contig104:317644..3178261690879669.750642-CDS-C-linearis_contig104:317644..317826Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 317645..317826 +
1622927386.4727912-CDS-C-linearis_contig104:318193..3183071622927386.4727912-CDS-C-linearis_contig104:318193..318307Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 318194..318307 +
1690879669.7592041-CDS-C-linearis_contig104:318193..3183071690879669.7592041-CDS-C-linearis_contig104:318193..318307Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 318194..318307 +
1622927386.4861684-CDS-C-linearis_contig104:318665..3187711622927386.4861684-CDS-C-linearis_contig104:318665..318771Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 318666..318771 +
1690879669.766813-CDS-C-linearis_contig104:318665..3187711690879669.766813-CDS-C-linearis_contig104:318665..318771Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 318666..318771 +
1622927386.4997444-CDS-C-linearis_contig104:319124..3192481622927386.4997444-CDS-C-linearis_contig104:319124..319248Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 319125..319248 +
1690879669.7749178-CDS-C-linearis_contig104:319124..3192481690879669.7749178-CDS-C-linearis_contig104:319124..319248Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 319125..319248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.894.1prot_C-linearis_contig104.894.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 312796..319248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.894.1

>prot_C-linearis_contig104.894.1 ID=prot_C-linearis_contig104.894.1|Name=mRNA_C-linearis_contig104.894.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=528bp
MMTASFGYDTSSSMSLLPPDGAAAPSQDSAVDEKAKAQEPARFSEEQQQE
QRGVPGRQLMEDRWPGAEETPFIPSGSSGSPTLARPSRNDRDGMMDGDLR
RAQLGMGMGRAPRLGEQPPLDPFAMERPPVLSANGGGAAAQGRGTIGAGE
IRAKPPARKAWKMSTTKPTPSFSSTPVGAAAAVDPANNGKQRGAGVAAAG
VGLTPPKWLPDENTLSCSGCGKDFDWIRRRHHCRLCGGIFCYACSQFRAL
LPRSFGSRDPQRLCQPCNARAAPLQEMLAAESMSNAVKENDVEQGTLASY
LNRPIAFTLGAEVRKAAYTVHNFTKEGMIQDQSIPQELLSHAKGLAFLTV
IKGGFIVAGRVGTGLVVAKTEEGVWSAPSAIATVGMGWGALIGGDITDFV
LVLNTEAALEAFSGRGQVSIGAELSVAVGPLGRTGAGNVSVAAEGVAHAY
SYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAA
RPLYEALENRGSAANQERLLSQGFRVG*
back to top

mRNA from alignment at C-linearis_contig104:312742..319580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.894.1 ID=mRNA_C-linearis_contig104.894.1|Name=mRNA_C-linearis_contig104.894.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6839bp|location=Sequence derived from alignment at C-linearis_contig104:312742..319580+ (Chordaria linearis ClinC8C monoicous)
CGGCGCGTTTTGCAGAGCAGCGAGAGACCGAGCTCAGGTGAAAGGAAAGG
GGAAATGATGACGGCTTCTTTTGGGTACGATACGTCCAGCTCAATGAGTC
TTCTACCACCAGACGGGGCTGCGGCTCCTTCTCAGGTGTGCTTCGAAGCA
CGGGTGTGTCACTCCTGTCTATCTATCTACAGTAGTTGAAGTCCTCCTCT
GCCGTATCCGCGTCCATCTCCCGTCTCTCCTTCCACACCCAGCCCCAACT
CACCGCCCACTTCAAACCATTTTCTTGGCTGTTCAGTGTGTTTCCGTCGC
CTGCAAAGTATACCTCTAAGCTCCTGATCTAACGAATCGATGGGGGAGTC
TAGTGCCAAGTCGAACTCTGTAATCCTTGCCTGGTCGGTCTCGTTTTGCT
TGCTCGTCGGTTGTCTGCTACAAGAGCACAAGCGCGGGTGCACGGCAACG
ACAGAAATAGAGGACTCTTTATCTGCAGCGTGCGGGCTCTTAACTTCTCG
TGTTTGCGACCGCCTCTTACTTTACAACAATGTCAACAGACAAATACGCT
GAGGAAAACCTCGCCGCCAGCAATGCAATATTAATATAATAGTAGACTGT
CTTAACCACCGAGGGGAAGGGGGGCGCAAAGTGTACCTCAATGATCTCCA
CGGCGAACTTAAGAGAGCAGCATACCGAGATGCACACTTTGACCGACTCG
TGAACACTTGAGTGGCTGGCTCTCTATGGAGTACGCCTGGGAGTCGTGGA
TAAAGTAAAGAGACGAAGAGGCTGGTTGCGGCACACGAGCTCCGAAAGTT
CTCACTTTTTAAGAGCAACCAATGAGAACTCGACAACGCAGAGCCCCCCC
CCCGCAGCGGCGTCCGCGTGCCTTAGTAGGTCGGTGTGTAAAAGCTACCA
GCTGTTTGTGTGGCGTACCGGTGTCGTAAGCTGCCCTCTGTTGCTTCCCC
TCAGCAATATTTGTTCAAAAAGCGCAAGAAGGACTTGTGGACACGAAGCA
ACAGCCGGCGACCCAGCCGACGAGTACCAAGCTTTTCAGCCACTAAGATA
TCGCCAGCTCCTACAGCCATCTGTAGTCTAAGCAGATTGGGTGGGGAGAA
CTCGCCGGGTGTGGGGCGAAGAGCCCAAGATCCACGTGTGTCTCCAGCAT
GATCATGATGCAGGAGTGAAATGCGGACCAAGACGGCGGCACCAATGTGT
TCTTCACATGCTGCGTGGGCATTAGCTTTCTGAACGGCGGTATTCATTTG
CTCATACGCGTAGCGTAACTCCCTCTTTCTCTCTCAGGACGCACCTGAGC
ACCGGACGGTAGAAGTATGACTATGAGCCGTCCAGTCCAAGTGCGGACAA
GCTCGTGTGGAACAGTTGGAGTGCTAGAGTATGCCGGCATGCAGCTCATG
TCTGTAGTTGTTGTCCCCGCAAGACACGCCCGAGAATTTCGCCACGTGGA
AGTAGATGCAGCATGCGTGCCATGAGCGAGCGACTGAGAAAACGCGTGAT
TGATTGTGCTGCCTCTGCTGCACGATGCGGCCCGAGGTTAGTTACTCTCT
CACGTAGCGGAAGCAAGGATTCATCTTTCACCTCCCCCACGCCTGTCTGT
ATTTGCTGATACAGTATGTCCGGCTAACATTCTTGTCCTAAGCAAGACAT
GAACTCGTGATTGATTTTCCGTTTTTGTGCTCTTTCCGCCTGCCCGCTGC
TTCGATATTCGATACGGGTCTGTTTTGATCAGGACAGTGCTGTGGATGAA
AAGGCAAAGGCGCAGGAGCCCGCGCGCTTTTCAGAAGAGGTGAGGACCTC
CGCGACACTAGTTTAATATACCATCCCCATGGCAGAAGGTTCTGCAACCC
CGTGTGGGGCATCTTCCTGCTGCCGTTGGCGTTTCTCGGCGGGCCTGCGG
TACTACTGTAGAGACGCCTCGTTGTCTCCGTTCTCTCCGGCGCTGCTATC
TTTCGCTCCGCATTTAACTGCTGTACATCGGTTGCCCACCTTGGCGCGTT
GGTGCGGTGGCATCTGTGCACGACAAGAGGTTAGCTTTTGACCTGTGATG
TGATGACCCCTGCTCCCTCTCCCGCCCGGCACCTGCCCCGCCAGCAGCAA
CAGCAAGAACAGCGAGGCGTGCCGGGCCGACAGCTCATGGAAGACAGGTG
GCCCGGGGCAGAGGAGACCCCCTTCATACCCAGCGGTAGCAGCGGCAGCC
CCACTCTTGCTCGGCCCAGCCGGAACGACCGCGACGGCATGATGGACGGT
GACCTCAGGCGGGCGCAGCTGGGAATGGGAATGGGGAGGGCCCCGCGACT
CGGAGAGCAGCCTCCCCTAGACCCGTTTGCCATGGAGAGGCCCCCAGTCC
TTAGCGCTAATGGTGGAGGGGCGGCGGCACAAGGGCGTGGCACGATCGGT
GCCGGAGAAATACGTGCGAAACCCCCGGCAAGGTACACAGCATAAACAAG
CAGTATTTTGGGTGATACGGTTGGCAGGTGGCATCGGTATGTAGTGGAAC
TGACGCCCTGGTTTTGTCGTTAGCGTGCGGTTTGGAACGTTCGGCGACGA
ACACGCCTTCGTGCTAGCTGCTGTCATGTCCCGAACCACCTCAACTTGCT
TGGATGTCATATCCAGCAACCCGTTGCTGGTCACCTTGGGACACGACATG
TGAACGCCTTTGACCTATGCTAATGTACCATGTAGAAGGGAAACCTTGTG
TTGTGCGGGGGGAATGAACATTAACATTCAAGCGCTCCTTTCCCTTGCCC
CGCCCGACCGCGCCAATCGCAGGAAAGCATGGAAAATGAGCACGACAAAG
CCGACCCCGAGCTTTTCCTCCACCCCTGTGGGCGCCGCTGCCGCCGTCGA
CCCCGCCAACAACGGTAAGCAGAGAGGCGCAGGGGTGGCTGCGGCGGGCG
TTGGGTTGACCCCGCCAAAGTGGTTGCCAGACGAGAACACCCTGTCCTGC
TCGGGGTGCGGCAAGGATTTCGACTGGATTAGGCGGCGGGTGAGAGAGGA
TTTTTGTTTTTGTGTCAGTCCGCTGCGGCCGGCGAGGCAGTTGTTTGGGC
GGAGTCGTGAGATTAAGTTGTTGTATCTTGTAGGCATCGGTAAGGAAGGT
GAAAATGGCGAGGAATCGCTCTATGTATGAGTTGCTCAGGCGGCGGGCGG
GCGGTGGTCGAGAGTGCCTTCAGCTGACAAGTCGACCGAGTGGGCTACAG
TCCGTCCCAACACAAAATACATGCTGTGTACGAACGGTTTCCGGCCGTAT
TTTCTCCGCCTCTACGGGTGCCCTTTGAGAGGGAGTCGCATTTCGCTTGT
AGTGCTGTCTTCGCTGTCGTCTAGCCTTGTGATTTGCGATATCGCCTCCT
GCCTTTTTGCTTCGATGGGCAGCATCACTGCCGTCTCTGCGGGGGTATTT
TCTGCTACGCGTGCAGCCAGTTCCGCGCGCTTCTCCCAAGATCGTTCGGC
TCTCGCGATCCGCAGCGGTTGTGCCAGCCCTGCAACGCGCGGGCTGCGCC
GCTCCAGGAGATGCTCGCCGGTGAGGAGCGCACGCACGCAGCGGCAGCAG
CGTCTTGGTGGTAAATAGCGCATCGCGGGCGTGCTATATATATAGGGTCG
CGCAGCAAGGGGATCCATGCGCCTGCCCGTTGAAGCACGCCCCGGCATCG
ACACGGCGTCGTGCACAACAACAAACGACCCGCGCATCCCATCCACTGTG
CCGCCGTGCTACAGTACATGGCAAGCAGAGATCAAGAAGCAACACAACCG
AACAAGCGATTCCACGCCCACGTGTGTGTCCTGCCCCCCCCCTGCTGTGT
GTTGTGCGTTCGACCGACTGAGCAGAGAGCATGAGCAACGCCGTTAAGGA
AAACGATGTGGAGCAGGGGACGCTGGCCTCGTACCTCAACCGGCCGATCG
CCTTCACGCTTGGGGCGGAGGTTCGGAAGGCCGCCTACACCGTGCACAAC
TTCACCAAAGAGTGAGCTCTCGAGATCTAGGGAGTACTGCCTGGCTGTTA
CGTACGCACGGAAGTAGCGGTGTTGGTGTTGGTGGTGATGGTGTTGCTGT
CGTCGTTGTCGGCTCTTCTGTGTTGTTGTTGTTGTTTTTGTTGTTGTCGG
TAGTCTTGGCTCATTTCGCTTTCCCTTGGCCTTCCCCTTTTCTCTTCCCT
CCTGGCCGCATGCGGGCATGGCGTATGGTATACTTCGAAGTATGCATACA
CCCGAGAAACCCCTGGAGGCTTTCGTTGTGTTGAGCCAATCTTGTTTTTG
GATCTTGGACGACGGCAATAAATTTGTCGCCGTTCTGCAGTTCATGTACT
TCGTATGTATGCCCGGCCCGCTTTCGCGCTCGTTCTGTTCTGTTCGGAGC
AGAGGGATGATCCAGGACCAGTCTATTCCGCAGGAGCTCCTGAGCCATGC
CAAGGGGCTCGCTTTCCTCACTGTCATCAAAGGGTAAGAGGTTGTTCAGG
TTCACGTAGTCACCTCTCACCTCAGGTTGCTGGTAGGGTTCGTGCGGAAG
TCTACATGTATCCATGCACTTTCCCACATTTGTGCTTCGACGGAGAAGGC
AGGGCACGTCTAAACGGATCTCTTCCTGCTGCTGTCATGTCGACCTGACG
TGATGCGATGGCGTGCACAGTGGTACTGTACATCGAAACTTGTGCCCGCC
AACAGCCCCCCCCTGTTCGCCCGCACAGAGTATATCATCTTGATGTTTTC
TCGAAATGCTGCATGCTGGATACAAAGCTGAACGTCACGGGCCGGGGCAG
CCGCCCCCAACCTCACCAGAGCGGCATTGTCGCCCCCCCGACACTGTCGC
CCCATCGCCACAACACACAGCACAGCAACGTTTTCATTTTACGCCGACCA
CGACGTGCACACGCACACTCCTATTCTATTCTCAACCAATAAACCACACG
CAGGGGCTTCATCGTGGCGGGGCGTGTCGGAACAGGGCTAGTGGTCGCTA
AGACCGAGGAAGGTGTGTGGTCGGCGCCCTCGGCTATCGCCACGGTCGGC
ATGGGCTGGGGCGCGCTCATCGGGGGCGATATCACCGATTTTGTGCTGGT
GCTCAACACGGAGGCAGCCCTGGAGGCATTCTCAGGTACGATCGGGTAGT
CCTGCGGTAGCGCAGGCAGAACGGGGGGTTATCATGGGGGCTGGTTTGGT
CCACCTGAGCATGAGCGGGAGTGTGTTTTGCCCCCCTTGATGTGCAATGG
TGTGTAGACGGAGGGCGACGCAGTTCTTGAAGCAAGCGCCGTTAGTGTTT
GGTTCATCGGAATGACAAAACGGTGGGAAGATACGCCGAAGAATTGGTTG
GTAGTTACCCAAGGAGAGCCCAGTTGCGCGGTGGACTCGTGGTTGGTTTA
TGTTCTACGCTCATTCCGTCGCTACAACCAAATGCCGTACGCGTGTGGTA
TGTGCATACATTAAACATGCTTTCGTGCTGTTTGCTGTATTCGAATCGGC
AGGCAGGGGGCAGGTGTCCATCGGTGCCGAGCTAAGCGTGGCGGTGGGGC
CATTGGGACGCACGGGAGCGGGCAACGTCAGCGTCGCGGCAGAGGGAGTG
GCGCACGCTTACTCTTGTGAGTAGCAACGATTTCGGTGCCCACGATACGG
TTTATCCCTGGTGCATAAATCAGCTATCAGAGGAAGGGCTCGGGGGGCGG
GGCGGTGTCTCTTTCTTGGGTGGACGGCTTTCCCGAATGTTGGCCGATGC
GCCTTGTTTTCTCGTCAGAGGCCTTGCTGTTCGCAGCAGCCCCCTCGAGC
GTATTTTCATCCCGTCGTGCGACTTGGGGCTAAGGTAGAGCAGCTGGTTG
CAGGAGGGACGATATGGTGATTAATTTGTCCTCGCGTGATTTCTCGTTCA
TGTCGTTTTCTGATCAGTAGTTGTTTAGCTCAATGCGCGGATGATGGGTG
TCAAAATGCATCCTGGTCTCACAGACAGCCACAGCAGAGGACTCTTCGCA
GGGTTGAGCCTGGAGGGAGGGGTCATCGTGTCTAGGCCGGACGTGAACCG
CAAGTTCTACGGCCGACAAGTTTCCGTCAGGTGGGTTTGGTTTGCTTGTC
GCCCTGTGCGGTTTGTTGTCCAAGCTCTTCTTCTTGCACACGACGGTAAC
CGCAGCCTTATGGGCTGCGAGGTCTCTTTCCTTCACGAGGCTCACTCGTG
TCCGTCGTTTTTTGCATCGTCTGCCCGTTTATCCCTCTTGTCCCTTTTAT
TTTTTTGTTGCCTTGGCGTGTCCCAAGCTAATTGTTTGCTCACAGTCACC
ATCACCGTCATCACCGCAGGATGTCACCACCAATATCACCGGAGTAGAAA
CTCCTCTCGGCCGCGCCTTTTTTCTCAGCATGCTCACACGCTCGCCCCCC
ATTCTCGACGACCAATCGTGCCCATGCTGGCAGGGAGCTGCTCTCTGGAA
GCGTGGCACCCCCGCCCGCGGCCCGACCGTTGTATGAAGCGCTCGAGAAT
CGAGGATCGGCTGCCAATCAGGAGCGTCTTCTGTCGCAGGGTTTCCGTGT
CGGTTAGAGTTAGAAGGTGTTGTTGAGCACTTTCGAGGGGGGGCTGTTGG
TCGAGAGGCCTTTTGTTTTACAACAGAATGGCGACGTAGACGAGCCATTC
TTCATCGGTGTATTTTTGTATGGTCTAGTTCGGCGGAAGTGCCCAGTTGG
CATAGAAATGAGTTGGACGGTAACGACAACGTACGCATCGCTTGTATTCT
TGGTGGTCACTTTAGACCAGACCAGTGGTCTGAAGTCGGCGTTACAAATC
TGATGATTGCTGTTGGATTGAGTCTATACTTGGTGAGAATGTTTCGCGGT
ATATTTGTGATTTGTTCATTAGTCTATGTAGGGCCGGGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig104:312742..319580+

>mRNA_C-linearis_contig104.894.1 ID=mRNA_C-linearis_contig104.894.1|Name=mRNA_C-linearis_contig104.894.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3168bp|location=Sequence derived from alignment at C-linearis_contig104:312742..319580+ (Chordaria linearis ClinC8C monoicous)
ATGATGACGGCTTCTTTTGGGTACGATACGTCCAGCTCAATGAGTCTTCT
ACCACCAGACGGGGCTGCGGCTCCTTCTCAGATGATGACGGCTTCTTTTG
GGTACGATACGTCCAGCTCAATGAGTCTTCTACCACCAGACGGGGCTGCG
GCTCCTTCTCAGGACAGTGCTGTGGATGAAAAGGCAAAGGCGCAGGAGCC
CGCGCGCTTTTCAGAAGAGGACAGTGCTGTGGATGAAAAGGCAAAGGCGC
AGGAGCCCGCGCGCTTTTCAGAAGAGCAACAGCAAGAACAGCGAGGCGTG
CCGGGCCGACAGCTCATGGAAGACAGGTGGCCCGGGGCAGAGGAGACCCC
CTTCATACCCAGCGGTAGCAGCGGCAGCCCCACTCTTGCTCGGCCCAGCC
GGAACGACCGCGACGGCATGATGGACGGTGACCTCAGGCGGGCGCAGCTG
GGAATGGGAATGGGGAGGGCCCCGCGACTCGGAGAGCAGCCTCCCCTAGA
CCCGTTTGCCATGGAGAGGCCCCCAGTCCTTAGCGCTAATGGTGGAGGGG
CGGCGGCACAAGGGCGTGGCACGATCGGTGCCGGAGAAATACGTGCGAAA
CCCCCGGCAAGCAACAGCAAGAACAGCGAGGCGTGCCGGGCCGACAGCTC
ATGGAAGACAGGTGGCCCGGGGCAGAGGAGACCCCCTTCATACCCAGCGG
TAGCAGCGGCAGCCCCACTCTTGCTCGGCCCAGCCGGAACGACCGCGACG
GCATGATGGACGGTGACCTCAGGCGGGCGCAGCTGGGAATGGGAATGGGG
AGGGCCCCGCGACTCGGAGAGCAGCCTCCCCTAGACCCGTTTGCCATGGA
GAGGCCCCCAGTCCTTAGCGCTAATGGTGGAGGGGCGGCGGCACAAGGGC
GTGGCACGATCGGTGCCGGAGAAATACGTGCGAAACCCCCGGCAAGGAAA
GCATGGAAAATGAGCACGACAAAGCCGACCCCGAGCTTTTCCTCCACCCC
TGTGGGCGCCGCTGCCGCCGTCGACCCCGCCAACAACGGTAAGCAGAGAG
GCGCAGGGGTGGCTGCGGCGGGCGTTGGGTTGACCCCGCCAAAGTGGTTG
CCAGACGAGAACACCCTGTCCTGCTCGGGGTGCGGCAAGGATTTCGACTG
GATTAGGCGGCGGGAAAGCATGGAAAATGAGCACGACAAAGCCGACCCCG
AGCTTTTCCTCCACCCCTGTGGGCGCCGCTGCCGCCGTCGACCCCGCCAA
CAACGGTAAGCAGAGAGGCGCAGGGGTGGCTGCGGCGGGCGTTGGGTTGA
CCCCGCCAAAGTGGTTGCCAGACGAGAACACCCTGTCCTGCTCGGGGTGC
GGCAAGGATTTCGACTGGATTAGGCGGCGGCATCACTGCCGTCTCTGCGG
GGGTATTTTCTGCTACGCGTGCAGCCAGTTCCGCGCGCTTCTCCCAAGAT
CGTTCGGCTCTCGCGATCCGCAGCGGTTGTGCCAGCCCTGCAACGCGCGG
GCTGCGCCGCTCCAGGAGATGCTCGCCGCATCACTGCCGTCTCTGCGGGG
GTATTTTCTGCTACGCGTGCAGCCAGTTCCGCGCGCTTCTCCCAAGATCG
TTCGGCTCTCGCGATCCGCAGCGGTTGTGCCAGCCCTGCAACGCGCGGGC
TGCGCCGCTCCAGGAGATGCTCGCCGCAGAGAGCATGAGCAACGCCGTTA
AGGAAAACGATGTGGAGCAGGGGACGCTGGCCTCGTACCTCAACCGGCCG
ATCGCCTTCACGCTTGGGGCGGAGGTTCGGAAGGCCGCCTACACCGTGCA
CAACTTCACCAAAGACAGAGAGCATGAGCAACGCCGTTAAGGAAAACGAT
GTGGAGCAGGGGACGCTGGCCTCGTACCTCAACCGGCCGATCGCCTTCAC
GCTTGGGGCGGAGGTTCGGAAGGCCGCCTACACCGTGCACAACTTCACCA
AAGAAGGGATGATCCAGGACCAGTCTATTCCGCAGGAGCTCCTGAGCCAT
GCCAAGGGGCTCGCTTTCCTCACTGTCATCAAAGGAGGGATGATCCAGGA
CCAGTCTATTCCGCAGGAGCTCCTGAGCCATGCCAAGGGGCTCGCTTTCC
TCACTGTCATCAAAGGGGGCTTCATCGTGGCGGGGCGTGTCGGAACAGGG
CTAGTGGTCGCTAAGACCGAGGAAGGTGTGTGGTCGGCGCCCTCGGCTAT
CGCCACGGTCGGCATGGGCTGGGGCGCGCTCATCGGGGGCGATATCACCG
ATTTTGTGCTGGTGCTCAACACGGAGGCAGCCCTGGAGGCATTCTCAGGG
GCTTCATCGTGGCGGGGCGTGTCGGAACAGGGCTAGTGGTCGCTAAGACC
GAGGAAGGTGTGTGGTCGGCGCCCTCGGCTATCGCCACGGTCGGCATGGG
CTGGGGCGCGCTCATCGGGGGCGATATCACCGATTTTGTGCTGGTGCTCA
ACACGGAGGCAGCCCTGGAGGCATTCTCAGGCAGGGGGCAGGTGTCCATC
GGTGCCGAGCTAAGCGTGGCGGTGGGGCCATTGGGACGCACGGGAGCGGG
CAACGTCAGCGTCGCGGCAGAGGGAGTGGCGCACGCTTACTCTTGCAGGG
GGCAGGTGTCCATCGGTGCCGAGCTAAGCGTGGCGGTGGGGCCATTGGGA
CGCACGGGAGCGGGCAACGTCAGCGTCGCGGCAGAGGGAGTGGCGCACGC
TTACTCTTACAGCCACAGCAGAGGACTCTTCGCAGGGTTGAGCCTGGAGG
GAGGGGTCATCGTGTCTAGGCCGGACGTGAACCGCAAGTTCTACGGCCGA
CAAGTTTCCGTCAGACAGCCACAGCAGAGGACTCTTCGCAGGGTTGAGCC
TGGAGGGAGGGGTCATCGTGTCTAGGCCGGACGTGAACCGCAAGTTCTAC
GGCCGACAAGTTTCCGTCAGGGAGCTGCTCTCTGGAAGCGTGGCACCCCC
GCCCGCGGCCCGACCGTTGTATGAAGCGCTCGAGAATCGAGGATCGGCTG
CCAATCAGGAGCGTCTTCTGTCGCAGGGTTTCCGTGTCGGTTAGGGAGCT
GCTCTCTGGAAGCGTGGCACCCCCGCCCGCGGCCCGACCGTTGTATGAAG
CGCTCGAGAATCGAGGATCGGCTGCCAATCAGGAGCGTCTTCTGTCGCAG
GGTTTCCGTGTCGGTTAG
back to top