prot_C-linearis_contig104.885.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig104.885.1
Unique Name	prot_C-linearis_contig104.885.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	580

Homology

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BLAST of mRNA_C-linearis_contig104.885.1 vs. uniprot
Match: A0A6H5K2E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E8_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 2.080e-95
Identity = 308/640 (48.12%), Postives = 346/640 (54.06%), Query Frame = 0

Query:    1 MGGLKLLGRIRARLKRRPQSPLDVVETEHGFAIDRVRSLVLSFQDGRAPPLWFPEDANLAAELGHLQLMKKMKAGFRYSVDAMDRAARRGHVDVLELLWQQGQECTTEXXXXXXXXXXLEAIIWLSGNTNAGATKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVSLLSMPRRGSNSSDHARLKPRGSTMSTISLSSLDNLGLGLDSPAYSKAMSTGNIPSSGRRLSFTCSKFSMNKAAQGGHVDVLQLLHDQGHECTTKAMDWASAFGQTAAVKWLSENRTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------------------------------RAMASLCMIFRRDXXXXXXXXXXXXXXXXXXXXXXXXXX-MERTARXXXXXXXXXXXDIGATCTSTAIHLAQVHEHHDVYHFLNTMYPGKASMMDAFSDPTVIAEQEMVEQDKNLDLVVQREARRRRQSIISSDLANISDNRRRGSMPISFGHNGKPALSRINTF 576
            MGGLKL+ R+RARLKRRPQ  LDV  T+HGFAI +VR L+ S+QDG AP LWFPEDANLAAELGHLQLMK MK              + G + +     +  ++              L  + WL  N   G T +    XXXXXXXXXXXXXXXXXX                                                                          +V+LL  PR+ S+S   A L+ RGS  S  S+ SLD+LGLGLDSP  S       IP       F CSKF+M+KAAQGGH+DVLQLLHDQGHECTT AMDWA+AFG+T  VKWLSENR EGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                +  SL  + + D                           MER AR           D GATCTSTA+HLAQVH HH VY FLN MYPGKAS  DAFSDPTV+AEQEMV+QDK+LDLVVQREARRRRQS+I +D    S++RRR S+PI FGHNGKPALSRINTF
Sbjct:    1 MGGLKLIYRLRARLKRRPQLQLDVKATDHGFAIKKVRKLIFSYQDGGAPALWFPEDANLAAELGHLQLMKTMKG------------VKSGQIFLTSRNLKVSRQ--RNRPDYAAANGYLPVVQWLHDNRREGCTVSAMNWXXXXXXXXXXXXXXXXXXETYVWYDMTQVDTPYAERTLPDRLFDLLSYRHEGCTTAAFDRAAMNNHVHVIMWLTDNRSEGGTESALQWA---MVALLLAPRKDSDSEGVA-LQTRGSNTSVTSIKSLDSLGLGLDSPTLS-------IPHGKGHFRFNCSKFAMDKAAQGGHIDVLQLLHDQGHECTTNAMDWAAAFGKTETVKWLSENREEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCDHIDDTPENSSSHPTAACEGCRPTYFIASFSSGGILDPKDNSFGSLPSVPQTDRLAVDSCYRQHPGPHRSPALEGCSREAMERAARNGHLEVVKLLHDRGATCTSTAVHLAQVHGHHGVYRFLNAMYPGKASPFDAFSDPTVVAEQEMVDQDKSLDLVVQREARRRRQSVIFADTVEASESRRRASLPIPFGHNGKPALSRINTF 615

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BLAST of mRNA_C-linearis_contig104.885.1 vs. uniprot
Match: D8LE58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE58_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 2.520e-76
Identity = 249/325 (76.62%), Postives = 267/325 (82.15%), Query Frame = 0

Query:  252 LKPRGSTMSTISLSSLDNLGLGLDSPAYSKAMSTGNIPSSGRRLSFTCSKFSMNKAAQGGHVDVLQLLHDQGHECTTKAMDWASAFGQTAAVKWLSENRTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAMASLCMIFRRDXXXXXXXXXXXXXXXXXXXXXXXXXXMERTARXXXXXXXXXXXDIGATCTSTAIHLAQVHEHHDVYHFLNTMYPGKASMMDAFSDPTVIAEQEMVEQDKNLDLVVQREARRRRQSIISSDLANISDNRRRGSMPISFGHNGKPALSRINTF 576
            LK RGS  S  S++SLD+LGLGLDSP  S A   G+         F+CSKF+M+KAAQGGH+DVLQLLHDQGHECTT AMDWA+AFG+T  VKWLSENR EGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               XXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXDIGATCTSTA+HLAQVH HH VY FLNTMYPGKAS  DAFSDPTV+AEQEMV+QDK LDLVVQREARRRRQS+I +D    S++RRR S+PI FGHNGKPALSRINTF
Sbjct:   86 LKTRGSNTSVTSINSLDSLGLGLDSPTLSIAHGNGHF-------GFSCSKFAMDKAAQGGHIDVLQLLHDQGHECTTNAMDWAAAFGKTETVKWLSENREEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIGATCTSTAVHLAQVHGHHGVYRFLNTMYPGKASPFDAFSDPTVVAEQEMVDQDKCLDLVVQREARRRRQSVIFADTVEASESRRRASLPIPFGHNGKPALSRINTF 394

[Close]

BLAST of mRNA_C-linearis_contig104.885.1 vs. uniprot
Match: D8LE60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE60_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 4.530e-28
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 0

Query:    1 MGGLKLLGRIRARLKRRPQSPLDVVETEHGFAIDRVRSLVLSFQDGRAPPLWFPEDANLAAELGHLQLMKKMK 73
            MGGLKLL R+RARLKRRPQ  LDV ET+HGFAI++VR L+ S+QDG AP LWFPEDANLAAELGHLQLMK +K
Sbjct:    1 MGGLKLLYRLRARLKRRPQLQLDVKETDHGFAIEKVRKLIFSYQDGGAPALWFPEDANLAAELGHLQLMKTIK 73

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig104.885.1 vs. uniprot

BLAST of mRNA_C-linearis_contig104.885.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5K2E8_9PHAE	2.080e-95	48.13	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LE58_ECTSI	2.520e-76	76.62	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LE60_ECTSI	4.530e-28	78.08	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002110	Ankyrin repeat	SMART	SM00248	ANK_2a	coord: 447..476 e-value: 83.0 score: 12.0 coord: 78..107 e-value: 800.0 score: 5.7 coord: 354..384 e-value: 420.0 score: 7.8 coord: 217..246 e-value: 4500.0 score: 0.1
IPR020683	Ankyrin repeat-containing domain	PFAM	PF12796	Ank_2	coord: 306..378 e-value: 3.7E-6 score: 27.4 coord: 168..238 e-value: 1.0E-6 score: 29.2
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 298..498 e-value: 2.6E-23 score: 84.6 coord: 48..247 e-value: 2.0E-19 score: 71.9
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 305..494
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 78..237
None	No IPR available	PANTHER	PTHR46586:SF3	ANKYRIN REPEAT-CONTAINING PROTEIN	coord: 56..243 coord: 425..497
None	No IPR available	PANTHER	PTHR46586	FAMILY NOT NAMED	coord: 283..416
None	No IPR available	PANTHER	PTHR46586:SF3	ANKYRIN REPEAT-CONTAINING PROTEIN	coord: 283..416
None	No IPR available	PANTHER	PTHR46586	FAMILY NOT NAMED	coord: 56..243 coord: 425..497

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig104	contig	C-linearis_contig104:212764..219462 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig104.885.1	mRNA_C-linearis_contig104.885.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig104 212764..219462 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig104.885.1 ID=prot_C-linearis_contig104.885.1|Name=mRNA_C-linearis_contig104.885.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=580bp
MGGLKLLGRIRARLKRRPQSPLDVVETEHGFAIDRVRSLVLSFQDGRAPP
LWFPEDANLAAELGHLQLMKKMKAGFRYSVDAMDRAARRGHVDVLELLWQ
QGQECTTEAIDGAAKEGHLEAIIWLSGNTNAGATKAAMDSAAANGYLSVV
GWLHHNRREGCTVSAMNRAAENGHLSVVKWLHQNRWEGCTTAAFDRAAMN
NHVDVILWLTKHRTEGGTESALQWAVSRGHTRLVSLLSMPRRGSNSSDHA
RLKPRGSTMSTISLSSLDNLGLGLDSPAYSKAMSTGNIPSSGRRLSFTCS
KFSMNKAAQGGHVDVLQLLHDQGHECTTKAMDWASAFGQTAAVKWLSENR
TEGCTKDAMDHAAAGGHLETVKWLHENGREGCTRYALTDAAGNGHMETVG
WLHRNRDEGCGRRAMASLCMIFRRDDAAANGHLEMVRWLHNNRSEGCSRE
AMERTARNGHLEVVKLLHDIGATCTSTAIHLAQVHEHHDVYHFLNTMYPG
KASMMDAFSDPTVIAEQEMVEQDKNLDLVVQREARRRRQSIISSDLANIS
DNRRRGSMPISFGHNGKPALSRINTFLGM*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002110	Ankyrin_rpt
IPR020683	Ankyrin_rpt-contain_dom
IPR036770	Ankyrin_rpt-contain_sf