mRNA_C-linearis_contig104.885.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.885.1 vs. uniprot
Match: A0A6H5K2E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E8_9PHAE) HSP 1 Score: 313 bits (802), Expect = 2.080e-95 Identity = 308/640 (48.12%), Postives = 346/640 (54.06%), Query Frame = 1 Query: 1 MGGLKLLGRIRARLKRRPQSPLDVVETEHGFAIDRVRSLVLSFQDGRAPPLWFPEDANLAAELGHLQLMKKMKAGFRYSVDAMDRAARRGHVDVLELLWQQGQECTTEXXXXXXXXXXLEAIIWLSGNTNAGATKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVSLLSMPRRGSNSSDHARLKPRGSTMSTISLSSLDNLGLGLDSPAYSKAMSTGNIPSSGRRLSFTCSKFSMNKAAQGGHVDVLQLLHDQGHECTTKAMDWASAFGQTAAVKWLSENRTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------------------------------RAMASLCMIFRRDXXXXXXXXXXXXXXXXXXXXXXXXXX-MERTARXXXXXXXXXXXDIGATCTSTAIHLAQVHEHHDVYHFLNTMYPGKASMMDAFSDPTVIAEQEMVEQDKNLDLVVQREARRRRQSIISSDLANISDNRRRGSMPISFGHNGKPALSRINTF 1728
MGGLKL+ R+RARLKRRPQ LDV T+HGFAI +VR L+ S+QDG AP LWFPEDANLAAELGHLQLMK MK + G + + + ++ L + WL N G T + XXXXXXXXXXXXXXXXXX +V+LL PR+ S+S A L+ RGS S S+ SLD+LGLGLDSP S IP F CSKF+M+KAAQGGH+DVLQLLHDQGHECTT AMDWA+AFG+T VKWLSENR EGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + SL + + D MER AR D GATCTSTA+HLAQVH HH VY FLN MYPGKAS DAFSDPTV+AEQEMV+QDK+LDLVVQREARRRRQS+I +D S++RRR S+PI FGHNGKPALSRINTF
Sbjct: 1 MGGLKLIYRLRARLKRRPQLQLDVKATDHGFAIKKVRKLIFSYQDGGAPALWFPEDANLAAELGHLQLMKTMKG------------VKSGQIFLTSRNLKVSRQ--RNRPDYAAANGYLPVVQWLHDNRREGCTVSAMNWXXXXXXXXXXXXXXXXXXETYVWYDMTQVDTPYAERTLPDRLFDLLSYRHEGCTTAAFDRAAMNNHVHVIMWLTDNRSEGGTESALQWA---MVALLLAPRKDSDSEGVA-LQTRGSNTSVTSIKSLDSLGLGLDSPTLS-------IPHGKGHFRFNCSKFAMDKAAQGGHIDVLQLLHDQGHECTTNAMDWAAAFGKTETVKWLSENREEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCDHIDDTPENSSSHPTAACEGCRPTYFIASFSSGGILDPKDNSFGSLPSVPQTDRLAVDSCYRQHPGPHRSPALEGCSREAMERAARNGHLEVVKLLHDRGATCTSTAVHLAQVHGHHGVYRFLNAMYPGKASPFDAFSDPTVVAEQEMVDQDKSLDLVVQREARRRRQSVIFADTVEASESRRRASLPIPFGHNGKPALSRINTF 615
BLAST of mRNA_C-linearis_contig104.885.1 vs. uniprot
Match: D8LE58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE58_ECTSI) HSP 1 Score: 256 bits (655), Expect = 2.520e-76 Identity = 249/325 (76.62%), Postives = 267/325 (82.15%), Query Frame = 1 Query: 754 LKPRGSTMSTISLSSLDNLGLGLDSPAYSKAMSTGNIPSSGRRLSFTCSKFSMNKAAQGGHVDVLQLLHDQGHECTTKAMDWASAFGQTAAVKWLSENRTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAMASLCMIFRRDXXXXXXXXXXXXXXXXXXXXXXXXXXMERTARXXXXXXXXXXXDIGATCTSTAIHLAQVHEHHDVYHFLNTMYPGKASMMDAFSDPTVIAEQEMVEQDKNLDLVVQREARRRRQSIISSDLANISDNRRRGSMPISFGHNGKPALSRINTF 1728
LK RGS S S++SLD+LGLGLDSP S A G+ F+CSKF+M+KAAQGGH+DVLQLLHDQGHECTT AMDWA+AFG+T VKWLSENR EGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXDIGATCTSTA+HLAQVH HH VY FLNTMYPGKAS DAFSDPTV+AEQEMV+QDK LDLVVQREARRRRQS+I +D S++RRR S+PI FGHNGKPALSRINTF
Sbjct: 86 LKTRGSNTSVTSINSLDSLGLGLDSPTLSIAHGNGHF-------GFSCSKFAMDKAAQGGHIDVLQLLHDQGHECTTNAMDWAAAFGKTETVKWLSENREEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIGATCTSTAVHLAQVHGHHGVYRFLNTMYPGKASPFDAFSDPTVVAEQEMVDQDKCLDLVVQREARRRRQSVIFADTVEASESRRRASLPIPFGHNGKPALSRINTF 394
BLAST of mRNA_C-linearis_contig104.885.1 vs. uniprot
Match: D8LE60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE60_ECTSI) HSP 1 Score: 117 bits (294), Expect = 4.530e-28 Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 1 Query: 1 MGGLKLLGRIRARLKRRPQSPLDVVETEHGFAIDRVRSLVLSFQDGRAPPLWFPEDANLAAELGHLQLMKKMK 219
MGGLKLL R+RARLKRRPQ LDV ET+HGFAI++VR L+ S+QDG AP LWFPEDANLAAELGHLQLMK +K
Sbjct: 1 MGGLKLLYRLRARLKRRPQLQLDVKETDHGFAIEKVRKLIFSYQDGGAPALWFPEDANLAAELGHLQLMKTIK 73 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.885.1 >prot_C-linearis_contig104.885.1 ID=prot_C-linearis_contig104.885.1|Name=mRNA_C-linearis_contig104.885.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=580bp MGGLKLLGRIRARLKRRPQSPLDVVETEHGFAIDRVRSLVLSFQDGRAPPback to top mRNA from alignment at C-linearis_contig104:212764..219462- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.885.1 ID=mRNA_C-linearis_contig104.885.1|Name=mRNA_C-linearis_contig104.885.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6699bp|location=Sequence derived from alignment at C-linearis_contig104:212764..219462- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:212764..219462- >mRNA_C-linearis_contig104.885.1 ID=mRNA_C-linearis_contig104.885.1|Name=mRNA_C-linearis_contig104.885.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3480bp|location=Sequence derived from alignment at C-linearis_contig104:212764..219462- (Chordaria linearis ClinC8C monoicous)back to top |