prot_C-linearis_contig104.877.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig104.877.1
Unique Nameprot_C-linearis_contig104.877.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length237
Homology
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BLAST of mRNA_C-linearis_contig104.877.1 vs. uniprot
Match: A0A6H5JH51_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH51_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 4.840e-35
Identity = 85/185 (45.95%), Postives = 116/185 (62.70%), Query Frame = 0 
Query:    1 MIAVLLVNMVQAVEPMANKE---RLRLRPWAQHCLDHNVFDKSRYLALSVALVW-GGLVAVVATQLPYDSE-LGWSVAITCLVVWGLSLASVSPGVALMGVWGILWLIPAGLALVLRSVFDAGLMLINKLARARRRMTREIRDHATVKERNACGILAQVLPLLLRVSAAHPTVRRLLAHPSALLY 180
            M+AVL+VNMVQAVEPM       + RLRPWA+  LD NVFD   YL L V ++W GG+   +   + ++ E LG+++ + CL+V GLS+A+V+PG+AL+G WG +WL+P GLA V RS FD  LMLINK++   RRM  E+  HA    R    +   +L  LL+V    P    L++ P  LLY
Sbjct:  364 MVAVLVVNMVQAVEPMDMSRVSPKDRLRPWARKYLDDNVFDTKWYLTLLVGVLWSGGVTVTIFVGVSHEFEGLGYTIPVICLIVLGLSIAAVNPGMALLGAWGFIWLVPVGLAFVCRSAFDTALMLINKVSLTWRRMANEVVSHARDSARGEFSV-RDILKFLLQVLPLTPLF--LVSLPIPLLY 545
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.877.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH51_9PHAE4.840e-3545.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..93
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 94..98
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 42..60
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 13..41
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 61..71
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 8..12
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 123..236
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..12
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 99..122
NoneNo IPR availableTMHMMTMhelixcoord: 42..64
NoneNo IPR availableTMHMMTMhelixcoord: 93..115
NoneNo IPR availableTMHMMTMhelixcoord: 69..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:141902..142612 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.877.1mRNA_C-linearis_contig104.877.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig104 138295..143191 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig104.877.1 ID=prot_C-linearis_contig104.877.1|Name=mRNA_C-linearis_contig104.877.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=237bp
MIAVLLVNMVQAVEPMANKERLRLRPWAQHCLDHNVFDKSRYLALSVALV
WGGLVAVVATQLPYDSELGWSVAITCLVVWGLSLASVSPGVALMGVWGIL
WLIPAGLALVLRSVFDAGLMLINKLARARRRMTREIRDHATVKERNACGI
LAQVLPLLLRVSAAHPTVRRLLAHPSALLYHVDVDFLPDRRLVAVPRQPV
PTVPDPRRLRQRGLENGPPRDGHRAEAHDETSRREG*
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