mRNA_C-linearis_contig104.873.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.873.1
Unique NamemRNA_C-linearis_contig104.873.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Match: A0A6H5JEN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEN4_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 5.430e-10
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   19 NGLTGFDCCQGKIVASGRLCSVTREAPCFMDTGD 120
            +GLTG DCCQ +I ASGRLCSVTREAPC+MD GD
Sbjct:   41 SGLTGEDCCQNRITASGRLCSVTREAPCYMDGGD 74
[Close]
BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Match: D8LL13_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL13_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 6.120e-8
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:   22 GLTGFDCCQGKIVASGRLCSVTREAPCFMD 111
            GLTG DCCQ +I ASGRLCSVT+EAPC+MD
Sbjct:  809 GLTGEDCCQNRITASGRLCSVTQEAPCYMD 838
[Close]
BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Match: D7FRL2_ECTSI (Endo alpha-1,4 polygalactosaminidase precusor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL2_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.140e-7
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 GCSNRGNGLTGFDCCQGKIVASGRLCSVTREAPCFMDTGDEDSPTPTP 144
            GCSNRG GLTG DCC   I   G LCSV  +APCF+D G+  + +P P
Sbjct:   96 GCSNRGGGLTGDDCCVSNIEEHGALCSVAGQAPCFVD-GEVGTSSPEP 142
[Close]
BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Match: A0A6H5JIY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIY0_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 3.220e-7
Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 GCSNRGNGLTGFDCCQGKIVASGRLCSVTREAPCFMD 111
            GCSNRG GL G DCCQ  I  +G +CSVT +APC +D
Sbjct:  189 GCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID 225
[Close]
BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 7.370e-7
Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 GCSNRGNGLTGFDCCQGKIVASGRLCSVTREAPCFMD 111
            GCSNRG GL G DCCQ  I  +G +CSVT +APC +D
Sbjct:  655 GCSNRGEGLDGDDCCQSDIKDNGNMCSVTGKAPCMID 691
[Close]
BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 3.170e-5
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 GCSNRGNGLTGFDCCQGKIVASGRLCSVTREAPCFMDTGDEDSPTP 138
            GCS+RG+GLTG DCC   I+A+G+ C     APC ++ G   SPTP
Sbjct:   42 GCSDRGDGLTGADCCTSDILAAGKACG---SAPCLLEEGS--SPTP 82
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JEN4_9PHAE5.430e-1079.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL13_ECTSI6.120e-880.00Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
D7FRL2_ECTSI1.140e-756.25Endo alpha-1,4 polygalactosaminidase precusor n=1 ... [more]
A0A6H5JIY0_9PHAE3.220e-762.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ42_ECTSI7.370e-762.16FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FWE8_ECTSI3.170e-552.17Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:114608..115353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size233
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927382.9450443-CDS-C-linearis_contig104:114607..1147201622927382.9450443-CDS-C-linearis_contig104:114607..114720Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 114608..114720 -
1690879667.7173264-CDS-C-linearis_contig104:114607..1147201690879667.7173264-CDS-C-linearis_contig104:114607..114720Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 114608..114720 -
1622927382.958118-CDS-C-linearis_contig104:115235..1153531622927382.958118-CDS-C-linearis_contig104:115235..115353Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 115236..115353 -
1690879667.729036-CDS-C-linearis_contig104:115235..1153531690879667.729036-CDS-C-linearis_contig104:115235..115353Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 115236..115353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.873.1prot_C-linearis_contig104.873.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 114608..115353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.873.1

>prot_C-linearis_contig104.873.1 ID=prot_C-linearis_contig104.873.1|Name=mRNA_C-linearis_contig104.873.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=77bp
GCSNRGNGLTGFDCCQGKIVASGRLCSVTREAPCFMDTGDEDSPTPTPPT
PSPVTPTTPTPPTPPPSLPPSPSPPSP
back to top

mRNA from alignment at C-linearis_contig104:114608..115353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.873.1 ID=mRNA_C-linearis_contig104.873.1|Name=mRNA_C-linearis_contig104.873.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=746bp|location=Sequence derived from alignment at C-linearis_contig104:114608..115353- (Chordaria linearis ClinC8C monoicous)
GGATGTTCCAACCGAGGGAATGGCCTCACCGGCTTCGATTGCTGCCAGGG
TAAAATCGTTGCTTCCGGCCGTCTCTGCTCGGTCACTCGCGAAGCCCCGT
GCTTTATGGACACTGGCGGTGAGCACACACTTCCAAAGACCCCCTTAACA
GACAGTTACATTTGTTTTGGGGGGGTGGGTTTTCCACGTCGAGGCTTCGT
GTGCGTGTTCGTCTAATTTACTCTCATCACGTGCCATGTTTCTCGGGCGT
TCTTTTTTCCGCGCAAAGTGGGGGGGTTGTGCCGCAGCAACGCTGGCACG
CCTTTTTTGGGCGATGGCTTGATGGGAACCCGTTGACCCTGGCGGCGTAA
CCTGTGTGAACTTTTCATTGGATTCGTAAGGAGCCATATCCGCCCGCTAT
TCGAGCGACAAAGTCACGTTCTCCGTACAGCTCGCCGTCCGGAACGTGTT
CGTACCACGCACAAACAACGGATATCGGTACATATCCATGCCCAAAGATA
TTCCTCGTTGAAAAATAAAGTTCCAAGTGCTGTGAGAACATGACGCTGTT
TCGACCTTAAACTCACTCTTTCGATACCGTTGATGTCTTCCCCGTTGTTT
CGCCCCCCCTTCCGCATCGCCCGTCCGACGCAGATGAGGATTCGCCAACA
CCAACACCCCCTACACCTTCCCCGGTGACGCCTACAACACCTACACCGCC
GACACCGCCGCCGTCACTGCCTCCGTCTCCATCTCCCCCTTCCCCC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig104:114608..115353-

>mRNA_C-linearis_contig104.873.1 ID=mRNA_C-linearis_contig104.873.1|Name=mRNA_C-linearis_contig104.873.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at C-linearis_contig104:114608..115353- (Chordaria linearis ClinC8C monoicous)
GGATGTTCCAACCGAGGGAATGGCCTCACCGGCTTCGATTGCTGCCAGGG
TAAAATCGTTGCTTCCGGCCGTCTCTGCTCGGTCACTCGCGAAGCCCCGT
GCTTTATGGACACTGGCGGGATGTTCCAACCGAGGGAATGGCCTCACCGG
CTTCGATTGCTGCCAGGGTAAAATCGTTGCTTCCGGCCGTCTCTGCTCGG
TCACTCGCGAAGCCCCGTGCTTTATGGACACTGGCGATGAGGATTCGCCA
ACACCAACACCCCCTACACCTTCCCCGGTGACGCCTACAACACCTACACC
GCCGACACCGCCGCCGTCACTGCCTCCGTCTCCATCTCCCCCTTCCCCCA
TGAGGATTCGCCAACACCAACACCCCCTACACCTTCCCCGGTGACGCCTA
CAACACCTACACCGCCGACACCGCCGCCGTCACTGCCTCCGTCTCCATCT
CCCCCTTCCCCC
back to top