mRNA_C-linearis_contig104.866.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.866.1
Unique NamemRNA_C-linearis_contig104.866.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig104.866.1 vs. uniprot
Match: A0A6H5JMC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC6_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 9.620e-69
Identity = 181/458 (39.52%), Postives = 225/458 (49.13%), Query Frame = 3
Query:  552 EKEVIEAQLRSLEFPNLEDGTGVYGKKTWDNAIKMVLAVEGFTRGFEIRIENKTKLMTKQSAESSGKKNRWACVWIICLHS----GKPRTRLLVANENVRRQTQTQKFQCKFKMVLWWPARSNVPRVAEGEICLTHDTPTSGGKEHARPKTFDNEMTSED-----------VEEMSGFINELTDAGVKTADLHKALQQR------SGKRLG-----------------------------------NG-----GKSKVRTIIDR-----------------------HNFTSGATISQRWRESET--------------------------PWPMAALAAK--PARLSAGAAESVGLPPTFSQPPGADPTSIVSPAPGANVPAYAYANGVALGKELGGMLKEITSLAGIQRSMETIKNLARQQIDVEVRSQRDQSTTRVFRGIFSQPADGLPPGGGGG 1589
            E   IE Q+R L FPNLEDGTG YG+KT ++A++MV AV GFTRGFE+   +K++   +Q                +C+      G+PR R  VANE   ++T + K  CKFK VLWW A+S+ P VA+G +CLTH TP+S GKEHARP+T  NEM+ ED           VE MS  +  L        DL++AL  +        KR G                                   N      G+ + R ++D                         N  +   +S     SE                           P  + AL A+  PA L+AGAA S GLP    QPP ADP S VS + G NVP YAYANGVALGKELGGM KEI +LAGI R+METIK  AR Q+DVE RSQ + ST RVFRG+FSQPA+ LP G  GG
Sbjct:  131 EIAAIEKQVRELIFPNLEDGTGEYGEKTLNSAVEMVKAVPGFTRGFEVTRVSKSRGEAQQME--------------LCVDHLRPPGEPRRRERVANEKDGKKTSSSKLGCKFKTVLWWSAKSDAPVVAQGGMCLTHHTPSSDGKEHARPRTCGNEMSREDIHTLGICSTQRVESMSSAVKRLVTRAGTMVDLNQALMGKVQDDANKSKRCGLLRHFSFVVDAMKDERCSTHAIEDTEAQVVAALGYNATCLVRGEDEARRLLDELAADPAKAKLCYDTSSGEDLLRDQNVNAVVRVSMIAPPSELGHLVALGPDGFFLCTCLRQLVYGLLCPHGLKALWAEGVPASLTAGAAASAGLPAGVGQPPRADPNSTVSRS-GPNVPTYAYANGVALGKELGGMFKEINNLAGIHRAMETIKLFARAQVDVEKRSQDEHSTNRVFRGVFSQPAEDLPSGDAGG 573          
BLAST of mRNA_C-linearis_contig104.866.1 vs. uniprot
Match: A0A6H5JCQ6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ6_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 5.980e-52
Identity = 88/145 (60.69%), Postives = 108/145 (74.48%), Query Frame = 3
Query:  741 SSGKKNRWACVWIICLHSGKPRTRLLVANENVRRQTQTQKFQCKFKMVLWWPARSNVPRVAEGEICLTHDTPTSGGKEHARPKTFDNEMTSEDVEEMSGFINELTDAGVKTADLHKALQQRSGKRLGNGGKSKVRTIIDRHNFTS 1175
            S GK NRW CVWI C+H G+PR R  VANE  R+ T + K  C FK VLWW A S+ P VA+G +CLTH TP+S  KEHARP+TFDNEM+ ED+E+MS FI +L DAGVKT DLHK +QQ+SGKRLG  GK+ VR++++RH   S
Sbjct:   65 SRGKLNRWICVWITCVHHGEPRRRERVANEEDRKNTSSSKLGCNFKTVLWWSANSDAPVVAQGGMCLTHHTPSSDEKEHARPRTFDNEMSREDMEQMSDFIIDLADAGVKTVDLHKTVQQKSGKRLGVEGKAVVRSVVERHRKAS 209          
BLAST of mRNA_C-linearis_contig104.866.1 vs. uniprot
Match: A0A6H5JXK5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK5_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.550e-44
Identity = 96/215 (44.65%), Postives = 141/215 (65.58%), Query Frame = 3
Query:  522 SSPAGAI-PIAEKEV--IEAQLRSLEFPNLEDGTGV-YGKKTWDNAIKMVLAVEGFTRGFEIRIENKTKLMTKQSAESSGKKNRWACVWIICLHSGKPRTRLLVANENVRRQTQTQKFQCKFKMVLWWPARSNVPRVAEGEICLTHDTPTSGGKEHARPKTFDNEMTSEDVEEMSGFINELTDAGVKTADLHKALQQRSGKRLGNGGKSKVRTII 1154
            +SP GAI P + +++  ++ ++ +L FPNLE G+   +G+ T +NA+ M+ A  G  RG+ ++  NKTKL T++     G++NRW  V I+C  +G PR R  VAN + RR T ++K  C F++ LWW A S  P VA+G++CLTH T TSGGKEH RP+  +NEM+  ++E    F+ EL  + VKT ++HK L+ R GKRLG  GK KVRT++
Sbjct:   73 ASPRGAILPTSPEDLATLQGEVENLLFPNLEQGSQQQFGEATIENAVGMLKAKIG--RGYPLQRHNKTKLYTRKQEAEHGRRNRWNYVEIVCPQAGSPRARERVANASARRNTSSEKIGCAFEVGLWWAANSPAPIVAKGKLCLTHHTKTSGGKEHERPRAIENEMSVAEIEAKRDFLRELHASRVKTTEIHKTLE-RVGKRLGQAGKQKVRTMM 284          
BLAST of mRNA_C-linearis_contig104.866.1 vs. uniprot
Match: A0A6H5JTT1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT1_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.960e-43
Identity = 95/236 (40.25%), Postives = 144/236 (61.02%), Query Frame = 3
Query:  522 SSPAGAIPI----AEKEVIEA--QLRSLEFPNLEDGTGVYGKKTWDNAIKMVLAVEGFTRGFEIRIENKTKLMTKQSAESSGKKNRWACVWIICLHSGKPRTRLLVANENVRRQTQTQKFQCKFKMVLWWPARSNVPRVAEGEICLTHDTPTSGGKEHARPKTFDNEMTSEDVEEMSGFINELTDAGVKTADLHKALQQRSGKRLGNGGKSKVRTII-----DRHNFTSGATISQR 1196
            S PAGA P     + KE+++   +L  L FPNLEDG+G YG KTW  A +M    E    G+ +++  K+KL TK S  +SG++NR+ CV I C+HSG+PR   + A+ + R++T  +KF CK+ + L+W A S+ P + + ++CL H    S G EH  P+  DNEMT ED+E  S  I ++ + G+KTA+++K LQ+ +GKRLG+ GK  +R +      D+ N   G   +Q+
Sbjct:   98 SPPAGAAPAVCARSAKEILKLHERLNGLVFPNLEDGSGEYGDKTWRKAFEM--GEEAVGCGYALQMNKKSKLFTKASKSTSGRRNRYNCVQIKCIHSGQPRETAITADVHARKKTSNKKFGCKWGLSLYWGANSDAPSLGK-DVCLRHTYQGSEGIEHDPPRVIDNEMTREDLEAESANIKKMHEKGIKTAEIYKYLQE-TGKRLGDKGKQMLRLMRAQFDKDKQNSRGGLNDAQQ 329          
BLAST of mRNA_C-linearis_contig104.866.1 vs. uniprot
Match: D8LJH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH3_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.040e-41
Identity = 145/410 (35.37%), Postives = 191/410 (46.59%), Query Frame = 3
Query:  546 IAEKEVIEAQLRSLEFPNLEDGTGVYGKKTWDNAIKMVLAVEGFTRGFEIRIENKTK--------------LMTKQSAESSGKKNRWACV----------WIICLHSGKPRTRLLVANENVRRQTQTQKFQCKFKMVLWWPARSNVPRVAEGEIC---------------LTHDTPTSGGKEHARPKTFDNEMTSEDVEEMSG---FINELTDAGVKTA----DLHKALQQRSGKRLGNGG-------KSKVRTIIDRHNFTS----------GATISQRWRESETPWPMAALAAKPARLSAGAAESVGLPPTFSQPPGADPTSIVSPAPGANVPAYAYANGVALGKELGGMLKEITSLAGIQRSMETIKNLARQQIDVEVRSQRDQSTTRVFRGIFSQPADGLPPGGGG 1586
            + E   +E +++ LEFPNLEDGTG +G+KT DNA+ M++A  G  RGF ++ ENKTK              + T Q A+   K+                ++    +   RT   V N     Q      +     +L   +   +P V + E                 LT+DT   G  E   P    +E     +   +    F   L D  V T      +  A +      LG  G       +  V  ++  H   +          GATIS RWR+SETPW MAALAAKPA+LS GAA          Q P  D + IVS   G N+ AYAYANGVALGKELGGM KE+ S+A IQR ME++K  A+QQI+VE RS RD+ST+RVF G   +P   LP G  G
Sbjct:   65 LGEIATLEEEIKKLEFPNLEDGTGNFGEKTMDNAVAMLMAKTG--RGFSLKRENKTKVGCEFHLGLWWGADMNTPQVAKPESKRRNLGGTVARVAVQEHSYVESFRTKHLRTFNFVLNAVKYEQCSQHATEDTEAQILGALSYEAIPVVRDEEAARRLFEELVADPTKANLTYDT---GSGELVDPSIPTSEAACVSMVSRTSVPHFAELLRDQNVHTVVRITPMSTASECGHLVALGPDGFFLCTCLRQLVYGLLCPHAIKALWYQRASQFNGATISPRWRDSETPWTMAALAAKPAKLSTGAAGLXXXXXXXXQMPPVDTSPIVSSHSGLNLSAYAYANGVALGKELGGMFKEVPSVASIQRLMESMKLHAKQQIEVEKRSLRDESTSRVFTGTLPRPTPALPQGDAG 469          
BLAST of mRNA_C-linearis_contig104.866.1 vs. uniprot
Match: A0A6H5JB23_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB23_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 6.280e-41
Identity = 95/205 (46.34%), Postives = 115/205 (56.10%), Query Frame = 3
Query:  573 QLRSLEFPNLEDGTGVYGKKTWDNAIKMVLAVEGFTRGFEIRIENKTKLMTKQSAESSGKKNRWACVWIICLHSGKPRTRLLVANENVRRQTQTQKFQCKFKMVLWWPARSNVPRV--------AEGEICLTHDTPTSGGKEHARPKTFDNEMTSEDVEEMSGFINELTDAGVKTADLHKALQQRSGKRLGNGGKSKVRTIIDRH 1163
            Q+R L FPNLEDGTG YG+KT + A++MV AV GFTRGFE+         T+ S    G                                       C FK VLWW AR + P V        AEG +CLTH TPTS GKEHA P TFDNEM+ +D+ EMS FI +L D+GVKT DLHK +QQ+SGKRLG  GK+ VR I+++H
Sbjct:   42 QVRELVFPNLEDGTGEYGEKTLNKAVEMVKAVPGFTRGFEV---------TRVSKSRVG---------------------------------------CNFKTVLWWGARQDAPVVGKASLSALAEGGMCLTHHTPTSNGKEHAPPTTFDNEMSRQDIYEMSDFIIDLADSGVKTVDLHKTVQQKSGKRLGREGKALVRCIVEKH 198          
BLAST of mRNA_C-linearis_contig104.866.1 vs. uniprot
Match: D8LKQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ9_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 2.440e-40
Identity = 119/294 (40.48%), Postives = 158/294 (53.74%), Query Frame = 3
Query:  642 NAIKMVLAVEGFTRGFEIRIENKTKLMTKQSAES-SGKKNRWACVWIICLHSGKPRTRLLVANENVRRQTQTQKFQCKFKMVLWWPARSNVPRVAEGEICLTHDTPTSGGKEHARPKTFDNE--MTSEDVEEMSGFINELTDAGVKTADLHKALQQRSGKRLGNGGKSKVRTIIDRHNFTSGATISQRWRESETPWPMAALAAKPARLSAGAAESVGLPPTFSQPPGADPTSIVSPAPG-ANVPAYAYAN--GVALGKELGGMLKEITSLAGIQRSMETIKNLARQQIDVEVRS 1505
            NA+KM++A  G  RGF ++ ENKTKL TK++ E  S ++NRW+ V I C H GKPR R  V + + R  ++++K                        +CL H TPTSGGKEH RP+ FDN   + +ED+EE S  I  L  + V T ++HKAL    GK+LG  GK KVR++  RH F +G T                  AKP R S   A + G P     PP  DP  I  P  G  +V AY YA+  GVALG+ELG M  ++TS+A +QR +E  KN A   ++ E RS
Sbjct:    3 NAVKMLMAKTG--RGFRLKRENKTKLWTKKNEEEDSRRRNRWSYVSIKCCHGGKPRKRPRVEDASARCNSKSRK----------------------ANLCLAHHTPTSGGKEHERPRAFDNGNGVCAEDIEEESDLIRRLHFSNVTTKEIHKALAD-IGKKLGPAGKQKVRSM--RHTFDAGLT------------------AKPPRRSTRGA-AAGHPGQV--PPVDDPNPIALPHAGPTSVSAYEYAHDGGVALGEELGAMFAQLTSVAAVQRVIENTKNFAEHLLEAEKRS 248          
BLAST of mRNA_C-linearis_contig104.866.1 vs. uniprot
Match: A0A6H5JGY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY2_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 3.620e-39
Identity = 92/139 (66.19%), Postives = 104/139 (74.82%), Query Frame = 3
Query: 1173 SGATISQRWRESETPWPMAALAAKPARLSAGAAESVGLPPTFSQPPGADPTSIVSPAPGANVPAYAYANGVALGKELGGMLKEITSLAGIQRSMETIKNLARQQIDVEVRSQRDQSTTRVFRGIFSQPADGLPPGGGGG 1589
            +GA IS RWRESETPW MA LAAKPA LSA AA S GLP    QPP  DP S VS + G NVP+Y YANGVALGK+LGGM KEI +LAGI R+METIK  AR Q+D++ RSQ   ST RVFRG+FSQPA+ +P G  GG
Sbjct:  898 NGAIISPRWRESETPWLMAELAAKPASLSARAATSAGLPAGVGQPPRVDPNSTVSRS-GPNVPSYTYANGVALGKKLGGMFKEINNLAGIHRAMETIKLFARGQVDLDKRSQEKHSTNRVFRGVFSQPAEDVPSGDAGG 1035          
BLAST of mRNA_C-linearis_contig104.866.1 vs. uniprot
Match: A0A6H5JBZ4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ4_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 5.610e-37
Identity = 89/230 (38.70%), Postives = 131/230 (56.96%), Query Frame = 3
Query:  564 IEAQLRSLEFPNLEDGTGVYGKKTWDNAIKMVLAVEGFTRGFEIRIENKTKLMTKQSAESSGKKNRWACVWIICLHSGKPRTRLLVANENVRRQTQTQKFQCKFKMVLWWPARSNVPRVAEGEICLTHDTPTSGGKEHARPKTFDNEMTSEDVEEMSGFINELTDAGVKTADLHKALQQRSGKRLGNGGKSKVRTIIDRHNFTSGATISQRWRESETPWPMAALAAKPAR 1253
            +  +L  L FPNLEDG+G YG KTW    +MV    G   G+ +++  K+KL TK S  +SG++NR+ CV I C+HSG+PR     A+ + R++T T+KF CK+ + L+W A S+ P + + ++CL H    S G EH  P+  +NEMT ED+E  S  + ++ + GVKTA++++ LQ+ +GKRLG     K            G     RW E     P  AL A+  R
Sbjct:  118 LHERLNGLVFPNLEDGSGEYGDKTWRKGFEMVEEAVGC--GYALQMNKKSKLFTKASESTSGRRNRYNCVQIKCIHSGQPRETAKTADVHARKKTSTKKFGCKWGLSLYWGANSDAPSLGK-DVCLRHTYQGSEGIEHDPPRVIENEMTREDLEAESANMKKMHEKGVKTAEIYEYLQE-TGKRLGG---RKTDAASHEGAVRQGQAEQPRWFERR---PAVALPARGGR 337          
BLAST of mRNA_C-linearis_contig104.866.1 vs. uniprot
Match: A0A6H5K8B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8B6_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 3.800e-34
Identity = 81/123 (65.85%), Postives = 90/123 (73.17%), Query Frame = 3
Query: 1152 IDRHNFTSGATISQRWRESETPWPMAALAAKPARLSAGAAESVGLPPTFSQPPGADPTSIVSPAPGANVPAYAYANGVALGKELGGMLKEITSLAGIQRSMETIKNLARQQIDVEVRSQRDQS 1520
            +DR N   GATIS RWRESETPW MA LAAKP  LSAG A S G P   SQPP  DP S  S + G NVP+YAYANGVALGKELGGM KEI SLAGI R++E+IK  AR Q+DVE RS+ + S
Sbjct:    6 VDRFN---GATISPRWRESETPWLMADLAAKPVTLSAGLAASAGPPVAVSQPPRVDPNSTASRS-GPNVPSYAYANGVALGKELGGMFKEIHSLAGINRAIESIKFFARGQVDVEKRSEEELS 124          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMC6_9PHAE9.620e-6939.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCQ6_9PHAE5.980e-5260.69Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JXK5_9PHAE1.550e-4444.65SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JTT1_9PHAE1.960e-4340.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LJH3_ECTSI1.040e-4135.37Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JB23_9PHAE6.280e-4146.34MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LKQ9_ECTSI2.440e-4040.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGY2_9PHAE3.620e-3966.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JBZ4_9PHAE5.610e-3738.70MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K8B6_9PHAE3.800e-3465.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:69699..73286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1602
Cds size1101
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927382.2571325-CDS-C-linearis_contig104:69698..701601622927382.2571325-CDS-C-linearis_contig104:69698..70160Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 69699..70160 -
1690879667.175374-CDS-C-linearis_contig104:69698..701601690879667.175374-CDS-C-linearis_contig104:69698..70160Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 69699..70160 -
1622927382.2676718-CDS-C-linearis_contig104:70845..710581622927382.2676718-CDS-C-linearis_contig104:70845..71058Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 70846..71058 -
1690879667.1876729-CDS-C-linearis_contig104:70845..710581690879667.1876729-CDS-C-linearis_contig104:70845..71058Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 70846..71058 -
1622927382.278199-CDS-C-linearis_contig104:71282..713481622927382.278199-CDS-C-linearis_contig104:71282..71348Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 71283..71348 -
1690879667.2056003-CDS-C-linearis_contig104:71282..713481690879667.2056003-CDS-C-linearis_contig104:71282..71348Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 71283..71348 -
1622927382.2894063-CDS-C-linearis_contig104:71881..720251622927382.2894063-CDS-C-linearis_contig104:71881..72025Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 71882..72025 -
1690879667.2195783-CDS-C-linearis_contig104:71881..720251690879667.2195783-CDS-C-linearis_contig104:71881..72025Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 71882..72025 -
1622927382.304238-CDS-C-linearis_contig104:72369..725361622927382.304238-CDS-C-linearis_contig104:72369..72536Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 72370..72536 -
1690879667.236004-CDS-C-linearis_contig104:72369..725361690879667.236004-CDS-C-linearis_contig104:72369..72536Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 72370..72536 -
1622927382.316122-CDS-C-linearis_contig104:72737..727861622927382.316122-CDS-C-linearis_contig104:72737..72786Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 72738..72786 -
1690879667.2482722-CDS-C-linearis_contig104:72737..727861690879667.2482722-CDS-C-linearis_contig104:72737..72786Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 72738..72786 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927382.3252819-UTR-C-linearis_contig104:72786..732861622927382.3252819-UTR-C-linearis_contig104:72786..73286Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 72787..73286 -
1690879667.2707546-UTR-C-linearis_contig104:72786..732861690879667.2707546-UTR-C-linearis_contig104:72786..73286Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 72787..73286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.866.1prot_C-linearis_contig104.866.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 69699..72786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.866.1

>prot_C-linearis_contig104.866.1 ID=prot_C-linearis_contig104.866.1|Name=mRNA_C-linearis_contig104.866.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=367bp
MSKRTKRSSPAGAIPIAEKEVIEAQLRSLEFPNLEDGTGVYGKKTWDNAI
KMVLAVEGFTRGFEIRIENKTKLMTKQSAESSGKKNRWACVWIICLHSGK
PRTRLLVANENVRRQTQTQKFQCKFKMVLWWPARSNVPRVAEGEICLTHD
TPTSGGKEHARPKTFDNEMTSEDVEEMSGFINELTDAGVKTADLHKALQQ
RSGKRLGNGGKSKVRTIIDRHNFTSGATISQRWRESETPWPMAALAAKPA
RLSAGAAESVGLPPTFSQPPGADPTSIVSPAPGANVPAYAYANGVALGKE
LGGMLKEITSLAGIQRSMETIKNLARQQIDVEVRSQRDQSTTRVFRGIFS
QPADGLPPGGGGGADTA
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mRNA from alignment at C-linearis_contig104:69699..73286-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.866.1 ID=mRNA_C-linearis_contig104.866.1|Name=mRNA_C-linearis_contig104.866.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3588bp|location=Sequence derived from alignment at C-linearis_contig104:69699..73286- (Chordaria linearis ClinC8C monoicous)
TGCTGCGCACTGGGGACCGGCTGCTGCACACCTGCTGTGACTGCGCACAC ACGCACACACACCCAAACACAGAACACACGACACACCCACCAGCGCTGCG TACCTTGACGGGATCGCATGAGCCTCTCCGTGCCAGCAGCCTACGGCAGC AGCATGGAGGGTGGTTCGGCTGCCGCCGCGGCTGCTTCGACTCCTGCGGG AGCGCCAGGCGCTGCTGCTGCTGCTGCTGCTGTTTCAACTCCTGCAGTAG CGCCATGCGCTGCTGTGGCGCCCTGCGGCACAGGCCTCGGTCCTGCCAGC GCAAGCCCTTCGCCGCTGACCCCGCTGATATCTTCGAGTGGGACCTCCAC CGAGACGCATGGTGATGGCGCTAATGGGGAGACGGAGGACATGGACATGG TGGTGGACGTTGGCGATGATGATGATGAAACCATCCCCTCGTCGTGTGGA GGCGCACGTCCTCCTGTTTCCTGCGCGGATGGAGGAGGTCCAGCCGGTGC ATGTCGAAGCGAACCAAGCGAAGCAGCCCCGCGGGAGCTATCCCCATAGG TATGAACCCTCCGCCCGTCTGTATGTCGACAATTGGTGTGTCGAGCACAC AACATAGCAGAACGTCCCCAAAGCATTTGAAAGCATGACTTTCTCGCGAC CCGTCGGGTTAGGAGAAAGTGCATCGTTAACGGCCGCCCCACAACTGCTG TTGCCACGTTGCCCCCTTGGATATCACCATTGGGATATCACCATGCACAG CGGAGAAGGAGGTTATCGAAGCTCAGTTGAGGAGCCTAGAGTTCCCCAAC CTCGAAGACGGAACGGGCGTTTACGGCAAGAAAACCTGGGACAACGCGAT TAAGATGGTGCTTGCTGTGGAAGGGTTCACGCGCGGGTTCGAAATCCGGA TAGAAAACAAAACGAAGGTGAGGTTTGTGAGGCTTACACCAATGCTTATG GCAACAGAATCTTAATCTTGATCTTCCCAAAATCTCGCCAAGATAAATCG AACCCTTGTGCGTTCTTCTTATGTTGTTATCGCGAGGAGAGTTCGATACT CCTCACCGCCGTCAACAATCAAGTGGAAGTTTATGGATAAGTCATGACTT GTCGCTGCCAATTTCCTGGAACGATAAAAAAATGGGAACGCTATATTGTA CGGGGTACCGAACCTATGACCTGGTACGTAAAACGTTGCATGATTCCCAC CTAGACCACCGGGGCAACCGGATGGTGTGTGCTAACAACAGAACGCGTCG CCGCCCCCCAGCTTATGACAAAACAGAGCGCGGAGAGCTCCGGGAAGAAA AACAGATGGGCCTGCGTGTGGATCATCTGCCTCCATTCGGGGAAGCCGAG GACACGTCTACTTGTCGCCAACGAGAATGTTCGCCGCCAAACTCAAACAC AAAAGGTAGGTTATTTCTATGGCCTGAAATTCGAACCGATGAAGAGCAGC GCTCAGCAGCAGAATTAACGTTATAAGTCGGCGCACAGCTTTCCTTTGGC GCTTTTGCAGTTGGGCTGTTTGAGTCATGTGAGGAATGAACTGAGGGTCG AGATGGGAACCAGGCTTCGACTGGAGGTTATTTTTGTGTTGACAGATAAT GGTGGTGCAATGTGGGTAGCGGCAACGTACAGCAGTGCAGGTATCGGCGC ATGTGATGCGTTGGAATATATTGTTTTGTTGCATGGCGAGAAAGCGCGGA GAATAAAAAGCGAAGAAGGCATGCGGTATGAGTTTCCATGCGGGTGCCTG CTTGCGGCCAAGGAACTTCCGAAGGAGCTTTTGTTGTGGGCGTGTAGGTT CCCCCTTTTTCGGCACGTATGAAGGTGAAGATGCAAAACGGTGACCCCTT CCACGCAGGCAGACGACTCGTTTCTCGGCCACCTGAGGAACCCCGTCATC CTTGTGATCGTTGCGCGGCCCCCTCGTTTAAATCCTAGTTCCAGTGCAAG TTCAAGATGGTGCTGTGGTGGCCGGCCAGGAGCAATGTGCCACGCGTGGC AGAGGTCAGTTTATCTCCTTTGTTTGGAAATTGACTGGCGATCACACGGT ATACTCGCGTTGATATGCTGAGTTTGACAGAAGCCAGAGCCGACCGCAAC AAGGTTCCTCCGCGGGTTCCTCGCGGTGTGCTGATAATGTGCTTGCGTGA GAATAGGTATGTGTTTATCGTGTGCGTACTCTTGACTCTTGACATTCCTT CGCGTGTCTCCCGACACCCGTGGCGCAGGGCGAAATATGCCTCACGCACG ACACCCCGACTTCAGGCGGAAAGGAGCACGCGCGCCCGAAAACGTTCGAC AACGAGATGACCTCAGAGGACGTTGAGGAGATGTCCGGCTTCATCAACGA GCTTACCGACGCAGGCGTGAAGACGGCAGATCTCCACAAGGCTCTTCAGC AAAGGAGCGGGAAGAGGCTGGGGAACGGCGGGAAATCGAAGGTACGTTCG GAGTGGGGTAGATAGACGTACGGTAATCATCGGAGTTTCCCCCCCCGGGG GTTGTCTCTACACCCCCCCTCCCCCCCCACACACACTACTTTTCCGGCCT GCCACCGTTCATTCGTTGATGCCCCCCCCGGCAATGGATCGTTCTTTGTT GCGGGAAAATTAAAGTCTTGATAAAAGACCCCCACCGGTATTTCGATTTC CCCCCGGGATACCAATTTGGTCGGGCGTTTCCGGGGGGGGGGTGTAGTCC CCATATTTTTTAGTAGACATTGTTTGGGATCGCGAAGCGCTACAGTAGTA CCATGATAAGTGGTCAAGAATGTCAATTACCTCTTGAAATGTTGCTCAAG ACTGTATGCGTGGCAGGTTCTGCACTCTGTGTTTGCAAACTTTTGTTTGT GTTGTTTTCCTTTTTGGTATTGGGCTTGTCTCCCGGGGTAATCCCCCCAC CCCCGATATTTTCAATTATTTCGATCCCCCCCCCCCCGCGGGGAGTGCGG GGAGTGTGTTTCAAATAAAATTCCTTATCCACCCCCGGGGGGAAACCGGT AAATTGGGCGAACGGAGGCAGAGGGCAGGACTCCAAAAGCCGGCGGTGAC CCTTTCAACCATGGCAACCTCACGATACTTTCATACTTAATCGTGTCCTC TGTCGGGTGGTGCTTGTCCACGGCAGGTGCGAACCATCATTGATAGGCAC AATTTCACAAGCGGAGCAACAATTTCACAAAGGTGGCGTGAAAGCGAGAC GCCATGGCCTATGGCCGCTCTAGCGGCGAAGCCTGCCAGGCTATCGGCGG GAGCGGCGGAGAGTGTCGGCCTACCGCCTACGTTCAGCCAGCCGCCGGGG GCCGATCCTACCTCCATCGTCTCGCCCGCGCCCGGCGCCAACGTGCCAGC GTACGCGTACGCGAACGGTGTTGCCCTGGGCAAGGAGTTAGGTGGAATGC TCAAAGAGATCACCTCTCTGGCGGGAATCCAACGCTCGATGGAGACCATA AAAAATCTCGCCCGGCAGCAGATCGACGTGGAGGTCCGATCCCAACGAGA CCAATCAACGACCCGGGTGTTCCGAGGGATTTTCTCGCAGCCCGCCGACG GCCTGCCGCCTGGAGGCGGTGGGGGTGCCGACACCGCG
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Coding sequence (CDS) from alignment at C-linearis_contig104:69699..73286-

>mRNA_C-linearis_contig104.866.1 ID=mRNA_C-linearis_contig104.866.1|Name=mRNA_C-linearis_contig104.866.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2202bp|location=Sequence derived from alignment at C-linearis_contig104:69699..73286- (Chordaria linearis ClinC8C monoicous)
ATGTCGAAGCGAACCAAGCGAAGCAGCCCCGCGGGAGCTATCCCCATAGA
TGTCGAAGCGAACCAAGCGAAGCAGCCCCGCGGGAGCTATCCCCATAGCG
GAGAAGGAGGTTATCGAAGCTCAGTTGAGGAGCCTAGAGTTCCCCAACCT
CGAAGACGGAACGGGCGTTTACGGCAAGAAAACCTGGGACAACGCGATTA
AGATGGTGCTTGCTGTGGAAGGGTTCACGCGCGGGTTCGAAATCCGGATA
GAAAACAAAACGAAGCGGAGAAGGAGGTTATCGAAGCTCAGTTGAGGAGC
CTAGAGTTCCCCAACCTCGAAGACGGAACGGGCGTTTACGGCAAGAAAAC
CTGGGACAACGCGATTAAGATGGTGCTTGCTGTGGAAGGGTTCACGCGCG
GGTTCGAAATCCGGATAGAAAACAAAACGAAGCTTATGACAAAACAGAGC
GCGGAGAGCTCCGGGAAGAAAAACAGATGGGCCTGCGTGTGGATCATCTG
CCTCCATTCGGGGAAGCCGAGGACACGTCTACTTGTCGCCAACGAGAATG
TTCGCCGCCAAACTCAAACACAAAAGCTTATGACAAAACAGAGCGCGGAG
AGCTCCGGGAAGAAAAACAGATGGGCCTGCGTGTGGATCATCTGCCTCCA
TTCGGGGAAGCCGAGGACACGTCTACTTGTCGCCAACGAGAATGTTCGCC
GCCAAACTCAAACACAAAAGTTCCAGTGCAAGTTCAAGATGGTGCTGTGG
TGGCCGGCCAGGAGCAATGTGCCACGCGTGGCAGAGTTCCAGTGCAAGTT
CAAGATGGTGCTGTGGTGGCCGGCCAGGAGCAATGTGCCACGCGTGGCAG
AGGGCGAAATATGCCTCACGCACGACACCCCGACTTCAGGCGGAAAGGAG
CACGCGCGCCCGAAAACGTTCGACAACGAGATGACCTCAGAGGACGTTGA
GGAGATGTCCGGCTTCATCAACGAGCTTACCGACGCAGGCGTGAAGACGG
CAGATCTCCACAAGGCTCTTCAGCAAAGGAGCGGGAAGAGGCTGGGGAAC
GGCGGGAAATCGAAGGGCGAAATATGCCTCACGCACGACACCCCGACTTC
AGGCGGAAAGGAGCACGCGCGCCCGAAAACGTTCGACAACGAGATGACCT
CAGAGGACGTTGAGGAGATGTCCGGCTTCATCAACGAGCTTACCGACGCA
GGCGTGAAGACGGCAGATCTCCACAAGGCTCTTCAGCAAAGGAGCGGGAA
GAGGCTGGGGAACGGCGGGAAATCGAAGGTGCGAACCATCATTGATAGGC
ACAATTTCACAAGCGGAGCAACAATTTCACAAAGGTGGCGTGAAAGCGAG
ACGCCATGGCCTATGGCCGCTCTAGCGGCGAAGCCTGCCAGGCTATCGGC
GGGAGCGGCGGAGAGTGTCGGCCTACCGCCTACGTTCAGCCAGCCGCCGG
GGGCCGATCCTACCTCCATCGTCTCGCCCGCGCCCGGCGCCAACGTGCCA
GCGTACGCGTACGCGAACGGTGTTGCCCTGGGCAAGGAGTTAGGTGGAAT
GCTCAAAGAGATCACCTCTCTGGCGGGAATCCAACGCTCGATGGAGACCA
TAAAAAATCTCGCCCGGCAGCAGATCGACGTGGAGGTCCGATCCCAACGA
GACCAATCAACGACCCGGGTGTTCCGAGGGATTTTCTCGCAGCCCGCCGA
CGGCCTGCCGCCTGGAGGCGGTGGGGGTGCCGACACCGCGGTGCGAACCA
TCATTGATAGGCACAATTTCACAAGCGGAGCAACAATTTCACAAAGGTGG
CGTGAAAGCGAGACGCCATGGCCTATGGCCGCTCTAGCGGCGAAGCCTGC
CAGGCTATCGGCGGGAGCGGCGGAGAGTGTCGGCCTACCGCCTACGTTCA
GCCAGCCGCCGGGGGCCGATCCTACCTCCATCGTCTCGCCCGCGCCCGGC
GCCAACGTGCCAGCGTACGCGTACGCGAACGGTGTTGCCCTGGGCAAGGA
GTTAGGTGGAATGCTCAAAGAGATCACCTCTCTGGCGGGAATCCAACGCT
CGATGGAGACCATAAAAAATCTCGCCCGGCAGCAGATCGACGTGGAGGTC
CGATCCCAACGAGACCAATCAACGACCCGGGTGTTCCGAGGGATTTTCTC
GCAGCCCGCCGACGGCCTGCCGCCTGGAGGCGGTGGGGGTGCCGACACCG
CG
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