mRNA_C-linearis_contig104.865.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.865.1
Unique NamemRNA_C-linearis_contig104.865.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig104.865.1 vs. uniprot
Match: D7FIQ5_ECTSI (POT1 protection of telomeres 1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ5_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 2.920e-87
Identity = 146/207 (70.53%), Postives = 166/207 (80.19%), Query Frame = 3 
Query:  273 ASPRIASSIAQVSMESMRVENLRGSVQTVFPIHACMPPTANNSETQDYGTVGSDGPIEGA---------------AKVFQVILRDLSVPGSTSTSNTLHHRINAYFYDKWADKHHAGIGPGDEIEVSGPAARLVHPDPSAADNGDHPFCLVFHTANDDALLALGAVAANHPSGGAQG-GVRAEE--DTVSCRVVRKAEQPGP--RGG 833
            ++P +A SIA+V+ ES+RVE LRG VQTVFPIHACM PTANNSETQDYGTVGSDGPIEGA               AKVFQV LRDLS+PG++  +  LHHRI+AYFYDKWAD HH+GIGPGD+IEVSGPAARLVHPDPSA+DNGDHPFCLVFHT  DD+LLALGAVAA+H +G A G G R++E  D VSC+VVRKA QPG   RGG
Sbjct:    4 STPTVARSIAEVTRESIRVEKLRGRVQTVFPIHACMTPTANNSETQDYGTVGSDGPIEGATKRSASILARDSVASAKVFQVTLRDLSLPGNSGANGNLHHRIDAYFYDKWADDHHSGIGPGDDIEVSGPAARLVHPDPSASDNGDHPFCLVFHTGRDDSLLALGAVAADHLAGVAGGSGGRSDEADDVVSCKVVRKAAQPGAGSRGG 210
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BLAST of mRNA_C-linearis_contig104.865.1 vs. uniprot
Match: A0A6H5JCK4_9PHAE (Telo_bind domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK4_9PHAE)

HSP 1 Score: 285 bits (730), Expect = 4.620e-86
Identity = 140/188 (74.47%), Postives = 163/188 (86.70%), Query Frame = 3 
Query:  273 ASPRIASSIAQVSMESMRVENLRGSVQTVFPIHACMPPTANNSETQDYGTVGSDGPIEGAAKVFQVILRDLSVPGSTSTSNTLHHRINAYFYDKWADKHHAGIGPGDEIEVSGPAARLVHPDPSAADNGDHPFCLVFHTANDDALLALGAVAANHPSGGAQGGV-RAEE--DTVSCRVVRKAEQPGPR 827
            ++P +A SIA+V+ E++RVE LRG VQTVFPIHACM PTA+NSETQDYGTVGSDGPIEGA KVFQV LRDLS+PG++  +  LHHRI+AYFYDKWAD HH+GIGPGD+IEVSGPAARLVHPDPSA+DNGDHPFCLVFHT +DD+LLALGA+AA+H +G A GG  R +E  D VSC+VVRKA QPG R
Sbjct:    4 SAPTVARSIAEVTREAIRVEKLRGRVQTVFPIHACMTPTASNSETQDYGTVGSDGPIEGATKVFQVTLRDLSLPGNSGANGNLHHRIDAYFYDKWADDHHSGIGPGDDIEVSGPAARLVHPDPSASDNGDHPFCLVFHTGSDDSLLALGAMAADHLAGVAGGGGGRNDEADDVVSCKVVRKAVQPGAR 191
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIQ5_ECTSI2.920e-8770.53POT1 protection of telomeres 1 homolog n=1 Tax=Ect... [more]
A0A6H5JCK4_9PHAE4.620e-8674.47Telo_bind domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:61503..63511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score283.1
Seed ortholog evalue9.4e-74
Seed eggNOG ortholog2880.D7FIQ5
Preferred namePOT1
KEGG koko:K10406,ko:K11109,ko:K22128
KEGG TC1.A.75.1
KEGG ModuleM00424
Hectar predicted targeting categoryother localisation
GOsGO:0000217,GO:0000228,GO:0000723,GO:0000781,GO:0000782,GO:0000783,GO:0000784,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003723,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005724,GO:0006139,GO:0006259,GO:0006278,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010521,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010638,GO:0010639,GO:0010833,GO:0016043,GO:0016233,GO:0017151,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0022607,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031933,GO:0031974,GO:0031981,GO:0032200,GO:0032202,GO:0032204,GO:0032205,GO:0032206,GO:0032210,GO:0032211,GO:0032212,GO:0032356,GO:0032357,GO:0032392,GO:0032508,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0042162,GO:0042592,GO:0043047,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045184,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051054,GO:0051095,GO:0051096,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051276,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051348,GO:0051641,GO:0051972,GO:0051973,GO:0051974,GO:0060249,GO:0060255,GO:0060382,GO:0060383,GO:0061820,GO:0061821,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070187,GO:0070198,GO:0070199,GO:0070200,GO:0070727,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0072594,GO:0080090,GO:0090304,GO:0090657,GO:0097159,GO:0098505,GO:0098687,GO:0098772,GO:0098847,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1904356,GO:1904357,GO:1904358,GO:1905462,GO:1905464,GO:1905773,GO:1905774,GO:1905776,GO:1990955,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2000573,GO:2001251,GO:2001252
EggNOG free text desc.positive regulation of DNA strand elongation
EggNOG OGsKOG4757@1,KOG4757@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko02000,ko03032,ko04131,ko04812
Exons3
Model size833
Cds size564
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.865.1prot_C-linearis_contig104.865.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 61503..63242 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927382.1733212-CDS-C-linearis_contig104:61502..617331622927382.1733212-CDS-C-linearis_contig104:61502..61733Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 61503..61733 -
1690879667.1289155-CDS-C-linearis_contig104:61502..617331690879667.1289155-CDS-C-linearis_contig104:61502..61733Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 61503..61733 -
1622927382.1895583-CDS-C-linearis_contig104:62141..622851622927382.1895583-CDS-C-linearis_contig104:62141..62285Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 62142..62285 -
1690879667.1409936-CDS-C-linearis_contig104:62141..622851690879667.1409936-CDS-C-linearis_contig104:62141..62285Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 62142..62285 -
1622927382.202319-CDS-C-linearis_contig104:63053..632421622927382.202319-CDS-C-linearis_contig104:63053..63242Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 63054..63242 -
1690879667.14946-CDS-C-linearis_contig104:63053..632421690879667.14946-CDS-C-linearis_contig104:63053..63242Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 63054..63242 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927382.2161233-UTR-C-linearis_contig104:63242..635111622927382.2161233-UTR-C-linearis_contig104:63242..63511Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 63243..63511 -
1690879667.158339-UTR-C-linearis_contig104:63242..635111690879667.158339-UTR-C-linearis_contig104:63242..63511Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 63243..63511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.865.1

>prot_C-linearis_contig104.865.1 ID=prot_C-linearis_contig104.865.1|Name=mRNA_C-linearis_contig104.865.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=188bp
MASPRIASSIAQVSMESMRVENLRGSVQTVFPIHACMPPTANNSETQDYG
TVGSDGPIEGAAKVFQVILRDLSVPGSTSTSNTLHHRINAYFYDKWADKH
HAGIGPGDEIEVSGPAARLVHPDPSAADNGDHPFCLVFHTANDDALLALG
AVAANHPSGGAQGGVRAEEDTVSCRVVRKAEQPGPRGG
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mRNA from alignment at C-linearis_contig104:61503..63511-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.865.1 ID=mRNA_C-linearis_contig104.865.1|Name=mRNA_C-linearis_contig104.865.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2009bp|location=Sequence derived from alignment at C-linearis_contig104:61503..63511- (Chordaria linearis ClinC8C monoicous)
GGTTGAATAATGAGGCATCATTTGATATTTGCTATTTGCCGTTTGTTTTG
ACTCGGGTCGCAGAGAGCAGACTGACGGCTTCTACGCGACAAATGCATAC
CGTGGCATAGTCCCTGTTCACTGCTGTGTATCACGGATCAAGGAGAGGCA
TAAAGAGAGGGAATACTTGATATACGAACGGAAAAAAGAGAGCGAGCGAG
CGCTGTCTCTCTACAACGCGCTGCGCGAACCGCCAAACCACTACTCTGTA
ACAGGTCGCTCATAGGACCATGGCGTCTCCCAGGATAGCCAGCTCTATAG
CGCAGGTGTCCATGGAGTCGATGCGCGTGGAGAACCTACGAGGAAGCGTG
CAGACGGTGTTTCCGATCCACGCGTGCATGCCGCCAACGGCCAACAACAG
CGAGACGCAAGACTACGGGACGGTGGGCAGCGACGGTCCGATCGAGGGAG
CAGCCAAGGTGATGGTGCGATGATAGTTTGGAAAAACCTGGGTTAGTTCC
GGTCACAGGTTTTGTTAAGCTAAACGGAAGACTGAGTTTGGTGTTTTTGG
CTGTTCGGGAGTTCTTGGGAACATGTTGTTTCGTCTCACGGCTTATGTAT
AAAAATTGCAAAATTGCACAGGTTCCGCCGCGTGTGGTCTCCTACTGTAT
CCTGTTCATAGCAAGACGTAGCCGTGCTGCCGTGTTATTCGCTCATTCCC
GACTATTCCACAGGATTTACCAGGGCACTGAGATGCATGCTCTTCGGCTG
TCGGTTGGGCGTGGTAGAATCAGCACAGGGCATAGAGGTGTAGAGAAAAC
CAGCACCCCGACAAAGCTGTCGGTTTTAAACACGCATGTCGCATCTCAGC
AAGCAGCTTTGCGTTTGGTTATGGGCGCTGGGTAACCAACCATTACAGAT
ACTTTCTCGCCGGTGGTAGTTGAACAACGCCGACCGGTTGTGAATCTATT
GCTGCGGCACCGTTCAGGGACTGGTTCACCGTGAAGAGAGAGTAGAGCAC
GGAAAGTGTGGTGGCAACTCCAGGAGGAAGAACCCCGAAAAATACTGCAA
CCTGCAACGGCAAGGTGGTTCATGAGCTTCTCTGCGCCCGTCCTTGCACA
CTCTGTTCTTTTCCGAGTGTAGGCGTCTACCTCGCCTCACTCTCCTCTTT
TCTCACCTGTGTACAGCAAAACCAACACCGCAAGGCTTTCGCCTTGTTTT
CTCGCCCCGGAACCTACCCCCCCCAGGTGTTCCAAGTTATCTTACGGGAC
CTAAGCGTGCCAGGTAGCACCAGCACCAGCAACACCCTTCACCACCGCAT
CAACGCCTACTTCTATGACAAGTGGGCGGACAAGCACCACGCCGGCATCG
GCCCCGGTGACGAGATAGAGGTGAGCGAAACCGCCGCGGTACAAAGGCGA
GGGGGCGCGCCAGCGCGGCAGTAATTTGTCGTGCTATTTAGCCGCAGGCG
AGCGTACCCATCTAGCCCTTGACTTGGCAACGCCGCCCCCTCCCCCTCCT
GTGGGCTTGCCAGCTGTCAAAGCATCCAACCGCTACAACACCAGTTCAGT
TCTGAAAGAACTTTGCCATAAACGTTGAACACCTGCCATCGTTGTCGACG
TAGCCTCCTCCGCGGAAGCGGGACCCCTGATTACTATTTAGTGTGGCTCT
GCCAAACCCGCGTCCGCTGCAGAGCTTCCCTGGCCCAGATCTCTCGATCG
AATGCGCATGAATGCTGCCCCCTCCCGACCATGTCACCCACCCACACACA
CTCCCGCACGCATTTGACTTTCCTCAAGGTCTCTGGGCCGGCCGCCCGGC
TCGTCCACCCGGACCCTTCCGCGGCCGACAACGGCGACCACCCCTTCTGC
CTGGTCTTCCACACCGCCAACGACGACGCCCTGCTGGCCCTGGGCGCCGT
CGCGGCGAACCACCCCAGCGGCGGCGCACAAGGGGGGGTGCGGGCGGAGG
AAGACACCGTTTCGTGCAGGGTTGTCCGGAAGGCCGAGCAGCCGGGGCCT
AGAGGCGGG
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Coding sequence (CDS) from alignment at C-linearis_contig104:61503..63511-

>mRNA_C-linearis_contig104.865.1 ID=mRNA_C-linearis_contig104.865.1|Name=mRNA_C-linearis_contig104.865.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at C-linearis_contig104:61503..63511- (Chordaria linearis ClinC8C monoicous)
ATGGCGTCTCCCAGGATAGCCAGCTCTATAGCGCAGGTGTCCATGGAGTC
GATGCGCGTGGAGAACCTACGAGGAAGCGTGCAGACGGTGTTTCCGATCC
ACGCGTGCATGCCGCCAACGGCCAACAACAGCGAGACGCAAGACTACGGG
ACGGTGGGCAGCGACGGTCCGATCGAGGGAGCAGCCAAGATGGCGTCTCC
CAGGATAGCCAGCTCTATAGCGCAGGTGTCCATGGAGTCGATGCGCGTGG
AGAACCTACGAGGAAGCGTGCAGACGGTGTTTCCGATCCACGCGTGCATG
CCGCCAACGGCCAACAACAGCGAGACGCAAGACTACGGGACGGTGGGCAG
CGACGGTCCGATCGAGGGAGCAGCCAAGGTGTTCCAAGTTATCTTACGGG
ACCTAAGCGTGCCAGGTAGCACCAGCACCAGCAACACCCTTCACCACCGC
ATCAACGCCTACTTCTATGACAAGTGGGCGGACAAGCACCACGCCGGCAT
CGGCCCCGGTGACGAGATAGAGGTGTTCCAAGTTATCTTACGGGACCTAA
GCGTGCCAGGTAGCACCAGCACCAGCAACACCCTTCACCACCGCATCAAC
GCCTACTTCTATGACAAGTGGGCGGACAAGCACCACGCCGGCATCGGCCC
CGGTGACGAGATAGAGGTCTCTGGGCCGGCCGCCCGGCTCGTCCACCCGG
ACCCTTCCGCGGCCGACAACGGCGACCACCCCTTCTGCCTGGTCTTCCAC
ACCGCCAACGACGACGCCCTGCTGGCCCTGGGCGCCGTCGCGGCGAACCA
CCCCAGCGGCGGCGCACAAGGGGGGGTGCGGGCGGAGGAAGACACCGTTT
CGTGCAGGGTTGTCCGGAAGGCCGAGCAGCCGGGGCCTAGAGGCGGGGTC
TCTGGGCCGGCCGCCCGGCTCGTCCACCCGGACCCTTCCGCGGCCGACAA
CGGCGACCACCCCTTCTGCCTGGTCTTCCACACCGCCAACGACGACGCCC
TGCTGGCCCTGGGCGCCGTCGCGGCGAACCACCCCAGCGGCGGCGCACAA
GGGGGGGTGCGGGCGGAGGAAGACACCGTTTCGTGCAGGGTTGTCCGGAA
GGCCGAGCAGCCGGGGCCTAGAGGCGGG
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