mRNA_C-linearis_contig104.921.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.921.1
Unique NamemRNA_C-linearis_contig104.921.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig104.921.1 vs. uniprot
Match: D8LE97_ECTSI (Cell division cycle 123 homolog (S. cerevisiae) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE97_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.750e-9
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = -3 
Query:  610 RGPADVGMGTLMCGTGGSGGLELEDLIESCRLADNE 717
            RGPADVGMGTL CGTGG+GGLELEDLIESCRLA+ +
Sbjct:  409 RGPADVGMGTLACGTGGNGGLELEDLIESCRLAEKD 444
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE97_ECTSI1.750e-986.11Cell division cycle 123 homolog (S. cerevisiae) n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:526590..527308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size720
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927381.915094-CDS-C-linearis_contig104:526589..5270211622927381.915094-CDS-C-linearis_contig104:526589..527021Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 526590..527021 +
1690879666.949746-CDS-C-linearis_contig104:526589..5270211690879666.949746-CDS-C-linearis_contig104:526589..527021Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 526590..527021 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927381.9257255-UTR-C-linearis_contig104:527021..5273081622927381.9257255-UTR-C-linearis_contig104:527021..527308Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 527022..527308 +
1690879666.9590983-UTR-C-linearis_contig104:527021..5273081690879666.9590983-UTR-C-linearis_contig104:527021..527308Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 527022..527308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.921.1prot_C-linearis_contig104.921.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 526590..527021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.921.1

>prot_C-linearis_contig104.921.1 ID=prot_C-linearis_contig104.921.1|Name=mRNA_C-linearis_contig104.921.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=144bp
KCSTLNTPQRVVHVSPWSERDCRQTKWDENTHTHTHIQHGPAQRTDRCVR
FALPSARLRRAHQQRRPGILAASFARNKTLLRLKTSKEGGQRRLSLRLTR
TCIIANLGHQERDARRHMIRTLQNHIFGLSTRSQGHPWDCHIS*
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mRNA from alignment at C-linearis_contig104:526590..527308+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.921.1 ID=mRNA_C-linearis_contig104.921.1|Name=mRNA_C-linearis_contig104.921.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=719bp|location=Sequence derived from alignment at C-linearis_contig104:526590..527308+ (Chordaria linearis ClinC8C monoicous)
AAGTGTAGTACTCTAAATACACCGCAACGTGTAGTACACGTCTCGCCTTG
GTCGGAAAGGGACTGTCGCCAAACTAAATGGGACGAAAACACACACACAC
ACACACACATACAACACGGTCCGGCACAACGGACAGATCGATGCGTGCGC
TTTGCGTTGCCGTCAGCACGCCTGCGACGCGCACATCAGCAGCGGAGGCC
CGGCATTTTGGCCGCTTCTTTTGCGCGAAACAAAACGCTCTTGCGGCTGA
AAACGTCGAAAGAGGGGGGGCAGCGTAGACTGTCTTTACGATTAACGCGT
ACGTGTATTATTGCGAACCTTGGGCACCAGGAGAGGGACGCACGTCGTCA
CATGATACGCACTCTTCAGAACCACATTTTTGGACTGTCCACAAGATCTC
AAGGACACCCATGGGACTGCCACATATCTTGAGCTGCGTGGCATCGTCGG
AGAACGAACAGAAAAATAAAGGTACACACACACCTACCCAGGAGTTTCTA
CATCCGCTCAACACCTCAGAAGACGCTTTGCAAAATTATTGCTTGAACGA
GCACGACAACGTACATTTACATACCTGTAACCTCCACCAAACAACGCCAA
CTTTCAACTCTCATTGTCGGCAAGGCGACACGACTCGATCAAGTCCTCGA
GCTCCAGGCCCCCTGAGCCCCCCGTACCGCACATCAAGGTCCCCATCCCC
ACGTCCGCTGGCCCTCTAT
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Coding sequence (CDS) from alignment at C-linearis_contig104:526590..527308+

>mRNA_C-linearis_contig104.921.1 ID=mRNA_C-linearis_contig104.921.1|Name=mRNA_C-linearis_contig104.921.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at C-linearis_contig104:526590..527308+ (Chordaria linearis ClinC8C monoicous)
AAGTGTAGTACTCTAAATACACCGCAACGTGTAGTACACGTCTCGCCTTG
GTCGGAAAGGGACTGTCGCCAAACTAAATGGGACGAAAACACACACACAC
ACACACACATACAACACGGTCCGGCACAACGGACAGATCGATGCGTGCGC
TTTGCGTTGCCGTCAGCACGCCTGCGACGCGCACATCAGCAGCGGAGGCC
CGGCATTTTGGCCGCTTCTTTTGCGCGAAACAAAACGCTCTTGCGGCTGA
AAACGTCGAAAGAGGGGGGGCAGCGTAGACTGTCTTTACGATTAACGCGT
ACGTGTATTATTGCGAACCTTGGGCACCAGGAGAGGGACGCACGTCGTCA
CATGATACGCACTCTTCAGAACCACATTTTTGGACTGTCCACAAGATCTC
AAGGACACCCATGGGACTGCCACATATCTTGAAAGTGTAGTACTCTAAAT
ACACCGCAACGTGTAGTACACGTCTCGCCTTGGTCGGAAAGGGACTGTCG
CCAAACTAAATGGGACGAAAACACACACACACACACACACATACAACACG
GTCCGGCACAACGGACAGATCGATGCGTGCGCTTTGCGTTGCCGTCAGCA
CGCCTGCGACGCGCACATCAGCAGCGGAGGCCCGGCATTTTGGCCGCTTC
TTTTGCGCGAAACAAAACGCTCTTGCGGCTGAAAACGTCGAAAGAGGGGG
GGCAGCGTAGACTGTCTTTACGATTAACGCGTACGTGTATTATTGCGAAC
CTTGGGCACCAGGAGAGGGACGCACGTCGTCACATGATACGCACTCTTCA
GAACCACATTTTTGGACTGTCCACAAGATCTCAAGGACACCCATGGGACT
GCCACATATCTTGA
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