prot_C-linearis_contig104.909.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig104.909.1
Unique Nameprot_C-linearis_contig104.909.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length206
Homology
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BLAST of mRNA_C-linearis_contig104.909.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.360e-9
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0 
Query:  176 GRQDEEGLLLAANCFDNTLRVFHRRFLNSQP 206
            GRQDEEGLLLAANCFDNTLRVFHRRFLNS+P
Sbjct:  358 GRQDEEGLLLAANCFDNTLRVFHRRFLNSRP 388
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.909.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNQ7_9PHAE1.360e-996.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 99..109
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 110..131
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..74
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 132..206
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 75..98
NoneNo IPR availableTMHMMTMhelixcoord: 72..94
NoneNo IPR availableTMHMMTMhelixcoord: 109..131

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:453818..454435 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.909.1mRNA_C-linearis_contig104.909.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig104 452761..454435 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig104.909.1 ID=prot_C-linearis_contig104.909.1|Name=mRNA_C-linearis_contig104.909.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=206bp
MLPCHAQRDLATLRCKQPRGTQSVVLCLMRGADGTLGTLPSCGSCSTLLK
AKSLEILGTLQNKQNQGSRCTLSPFLALALTLTLTHLTTFCLWCFLSSPL
PPLPSPFYAMLWYAMVCYAMLLPVVFPFGGVPGPVVRPRRSVLCFFLSLL
LHEHEPTTTTTTTTTTTKKASPPDAGRQDEEGLLLAANCFDNTLRVFHRR
FLNSQP
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