mRNA_C-linearis_contig104.909.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.909.1
Unique NamemRNA_C-linearis_contig104.909.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig104.909.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 2.040e-41
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 1 
Query:    1 VAYAGSTSKKIYTVDTRDPMSVVAKWDCGAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGVVDSYSLEDPIHISHIQV 240
            VAYAGSTSKKIYTVDTRDPM VVAKW+CGAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGVVDSYSLEDPIHISHIQ 
Sbjct:  273 VAYAGSTSKKIYTVDTRDPMGVVAKWNCGAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGVVDSYSLEDPIHISHIQA 352
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNQ7_9PHAE2.040e-4196.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:452761..454435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size1054
Cds size618
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.909.1prot_C-linearis_contig104.909.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 453818..454435 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927381.8622549-UTR-C-linearis_contig104:452760..4528891622927381.8622549-UTR-C-linearis_contig104:452760..452889Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 452761..452889 +
1690879666.9241233-UTR-C-linearis_contig104:452760..4528891690879666.9241233-UTR-C-linearis_contig104:452760..452889Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 452761..452889 +
1622927381.8732102-UTR-C-linearis_contig104:453512..4538171622927381.8732102-UTR-C-linearis_contig104:453512..453817Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 453513..453817 +
1690879666.9327211-UTR-C-linearis_contig104:453512..4538171690879666.9327211-UTR-C-linearis_contig104:453512..453817Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 453513..453817 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927381.8832712-CDS-C-linearis_contig104:453817..4544351622927381.8832712-CDS-C-linearis_contig104:453817..454435Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 453818..454435 +
1690879666.9405632-CDS-C-linearis_contig104:453817..4544351690879666.9405632-CDS-C-linearis_contig104:453817..454435Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 453818..454435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.909.1

>prot_C-linearis_contig104.909.1 ID=prot_C-linearis_contig104.909.1|Name=mRNA_C-linearis_contig104.909.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=206bp
MLPCHAQRDLATLRCKQPRGTQSVVLCLMRGADGTLGTLPSCGSCSTLLK
AKSLEILGTLQNKQNQGSRCTLSPFLALALTLTLTHLTTFCLWCFLSSPL
PPLPSPFYAMLWYAMVCYAMLLPVVFPFGGVPGPVVRPRRSVLCFFLSLL
LHEHEPTTTTTTTTTTTKKASPPDAGRQDEEGLLLAANCFDNTLRVFHRR
FLNSQP
back to top

mRNA from alignment at C-linearis_contig104:452761..454435+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.909.1 ID=mRNA_C-linearis_contig104.909.1|Name=mRNA_C-linearis_contig104.909.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1675bp|location=Sequence derived from alignment at C-linearis_contig104:452761..454435+ (Chordaria linearis ClinC8C monoicous)
GTGGCTTACGCGGGGTCGACGAGCAAGAAGATTTATACGGTGGACACGCG
GGACCCGATGTCGGTGGTCGCGAAGTGGGACTGCGGGGCGTTCGTCAACT
CTCTGCATGTTTATTCGGACGGGAGTAAGGTGAGATTGGCCAAGCTTTTT
GAGATGCGATAAGATGAGTTGAGGTGAAGCAAAGTATGGCAAGGTAGGGC
GAGGTGAGCCAACGCAAGCTTTAAGATGTACGTACGATCAGATATGGCAG
GGCAAGGTGGTGAGATAAGGTAAGGCACGCTTGAGACACGGTAAAAGGCA
AGGTGGTGAGGTAAGGTGAGGTAAGGCGAGGTACGGTGGACAGACAGGTG
GCGTGGGGAGCTGCAGTGTTGTTGTTATTGTTGTTGACGTTGAACATGAT
TCTGATGGCGGCGCAGGTTTGTTTGCGTCGAGAATTTAACACCGTCCCGA
CTGGCTGCTACTGGCGACCTCACATCCCGCGCTTGTTCCAACCAGCGGGA
TACATCACAAGTTACGCGACCTGCGTTTCATTTACACGTTTTCCAATGGC
CGATTCGATTGCGGCGTAACGCAATTATTGTTGTTGATATTTATGATGCA
GTTTTTTTTTTCAGAAAACACAAGACGTCCCGACTGGCTAACAGCTGCTG
GCCACCTAACACCCCGTGCCGATTCCCAGCCAGCGGGACAACATCACACG
ACACCGTGACAACGGTCGACTCAATTGCGGCGCAACTCGATTCAATTCGC
AGGTGGTCTCGGCAGACGCGAGCGGCAAGATCTTGACGTGGGATACCCGG
ACCGGGGGCGTCGTGGACTCGTACAGCCTTGAGGACCCCATACACATCTC
ACACATTCAGGTGCGGGGCCGCCGTTGCCCGTGTGCATGCGCCGACGGGA
CGCCGGGACAGCCAAAGCGTGGATGGCATGGTGGCGCACGTAAAACGGAC
TCGGAAGATCACATGATACTTCGAAGTATGGCATTTGTAGAGAGTCATTC
CGAGCCTCGGTGGTGCCGCCGGGAACGAGGGAAGCCAAAAACGTTGTGGT
GCATGCCATGCTGCCATGCCATGCCCAACGTGACCTCGCAACGCTTCGCT
GCAAGCAACCGAGGGGCACGCAGAGTGTAGTGTTGTGTTTGATGAGGGGG
GCGGATGGGACGCTTGGGACGCTTCCGAGCTGTGGCAGTTGCTCGACGCT
ATTAAAAGCGAAATCACTGGAAATCCTCGGCACCCTCCAAAACAAACAAA
ACCAAGGCTCTCGGTGCACACTCTCCCCGTTCCTAGCCCTAGCCCTAACC
CTAACCCTAACCCACCTGACCACGTTTTGTCTCTGGTGTTTTCTCTCCTC
GCCCTTGCCTCCCCTCCCCTCGCCCTTCTATGCGATGCTATGGTATGCTA
TGGTATGCTATGCTATGCTTCTCCCCGTTGTTTTCCCATTTGGTGGCGTT
CCTGGTCCTGTCGTTCGTCCGCGACGTTCTGTTTTGTGCTTCTTCCTTTC
TCTCCTCCTACACGAACACGAACCAACAACGACAACGACGACGACGACGA
CGACAACAAAAAAGGCTTCGCCCCCCGATGCGGGGCGGCAGGACGAGGAG
GGCCTCCTGCTCGCCGCCAACTGCTTCGACAACACCCTCCGGGTCTTCCA
CCGCCGCTTCCTGAACTCCCAGCCG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig104:452761..454435+

>mRNA_C-linearis_contig104.909.1 ID=mRNA_C-linearis_contig104.909.1|Name=mRNA_C-linearis_contig104.909.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at C-linearis_contig104:452761..454435+ (Chordaria linearis ClinC8C monoicous)
ATGCTGCCATGCCATGCCCAACGTGACCTCGCAACGCTTCGCTGCAAGCA
ACCGAGGGGCACGCAGAGTGTAGTGTTGTGTTTGATGAGGGGGGCGGATG
GGACGCTTGGGACGCTTCCGAGCTGTGGCAGTTGCTCGACGCTATTAAAA
GCGAAATCACTGGAAATCCTCGGCACCCTCCAAAACAAACAAAACCAAGG
CTCTCGGTGCACACTCTCCCCGTTCCTAGCCCTAGCCCTAACCCTAACCC
TAACCCACCTGACCACGTTTTGTCTCTGGTGTTTTCTCTCCTCGCCCTTG
CCTCCCCTCCCCTCGCCCTTCTATGCGATGCTATGGTATGCTATGGTATG
CTATGCTATGCTTCTCCCCGTTGTTTTCCCATTTGGTGGCGTTCCTGGTC
CTGTCGTTCGTCCGCGACGTTCTGTTTTGTGCTTCTTCCTTTCTCTCCTC
CTACACGAACACGAACCAACAACGACAACGACGACGACGACGACGACAAC
AAAAAAGGCTTCGCCCCCCGATGCGGGGCGGCAGGACGAGGAGGGCCTCC
TGCTCGCCGCCAACTGCTTCGACAACACCCTCCGGGTCTTCCACCGCCGC
TTCCTGAACTCCCAGCCGATGCTGCCATGCCATGCCCAACGTGACCTCGC
AACGCTTCGCTGCAAGCAACCGAGGGGCACGCAGAGTGTAGTGTTGTGTT
TGATGAGGGGGGCGGATGGGACGCTTGGGACGCTTCCGAGCTGTGGCAGT
TGCTCGACGCTATTAAAAGCGAAATCACTGGAAATCCTCGGCACCCTCCA
AAACAAACAAAACCAAGGCTCTCGGTGCACACTCTCCCCGTTCCTAGCCC
TAGCCCTAACCCTAACCCTAACCCACCTGACCACGTTTTGTCTCTGGTGT
TTTCTCTCCTCGCCCTTGCCTCCCCTCCCCTCGCCCTTCTATGCGATGCT
ATGGTATGCTATGGTATGCTATGCTATGCTTCTCCCCGTTGTTTTCCCAT
TTGGTGGCGTTCCTGGTCCTGTCGTTCGTCCGCGACGTTCTGTTTTGTGC
TTCTTCCTTTCTCTCCTCCTACACGAACACGAACCAACAACGACAACGAC
GACGACGACGACGACAACAAAAAAGGCTTCGCCCCCCGATGCGGGGCGGC
AGGACGAGGAGGGCCTCCTGCTCGCCGCCAACTGCTTCGACAACACCCTC
CGGGTCTTCCACCGCCGCTTCCTGAACTCCCAGCCG
back to top