mRNA_C-linearis_contig104.910.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.910.1
Unique NamemRNA_C-linearis_contig104.910.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig104.910.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.550e-15
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 2 
Query:  116 REPSLDLMHALRGHTVKNWPIRCAFFRGLHHRPPRVRLGLAKGSGGG 256
            +EPSL+LMHALRGHTVKNWPIR     GLHHRPPRVRLGLAKG  GG
Sbjct:  450 KEPSLELMHALRGHTVKNWPIR-----GLHHRPPRVRLGLAKGGNGG 491
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNQ7_9PHAE1.550e-1580.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:454549..455372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.910.1prot_C-linearis_contig104.910.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 454574..455372 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927381.3335178-UTR-C-linearis_contig104:454548..4545731622927381.3335178-UTR-C-linearis_contig104:454548..454573Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 454549..454573 +
1690879666.8354857-UTR-C-linearis_contig104:454548..4545731690879666.8354857-UTR-C-linearis_contig104:454548..454573Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 454549..454573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927381.3444676-CDS-C-linearis_contig104:454573..4547281622927381.3444676-CDS-C-linearis_contig104:454573..454728Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 454574..454728 +
1690879666.8446643-CDS-C-linearis_contig104:454573..4547281690879666.8446643-CDS-C-linearis_contig104:454573..454728Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 454574..454728 +
1622927381.3566945-CDS-C-linearis_contig104:455272..4553721622927381.3566945-CDS-C-linearis_contig104:455272..455372Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 455273..455372 +
1690879666.8531392-CDS-C-linearis_contig104:455272..4553721690879666.8531392-CDS-C-linearis_contig104:455272..455372Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 455273..455372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.910.1

>prot_C-linearis_contig104.910.1 ID=prot_C-linearis_contig104.910.1|Name=mRNA_C-linearis_contig104.910.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=85bp
MKSSAGSQSSDAGRASLSAVAGGMEDGGEDREPSLDLMHALRGHTVKNWP
IRCAFFRGLHHRPPRVRLGLAKGSGGGCLSCGGGG
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mRNA from alignment at C-linearis_contig104:454549..455372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.910.1 ID=mRNA_C-linearis_contig104.910.1|Name=mRNA_C-linearis_contig104.910.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=824bp|location=Sequence derived from alignment at C-linearis_contig104:454549..455372+ (Chordaria linearis ClinC8C monoicous)
CGCTGCCACCACCGCGCCATCCGCGATGAAGTCCTCCGCGGGCTCGCAGT
CTAGCGACGCGGGCAGGGCTTCGTTGTCGGCGGTGGCCGGGGGGATGGAG
GATGGGGGAGAGGACCGGGAGCCATCGCTGGATCTGATGCACGCTCTTCG
GGGGCACACGGTCAAGAACTGGCCAATCCGGTATGTTTATTTTTTGTTTT
CGGGCTTGTTGGTTTGGTTCGGTTGCTGTTGGGGGGCTCGTTGTGGGTAC
AGGGGGTCGTGGGTGTTGGTGTTGGGGGATGGACGGCTTTTCTTTTCCCA
GCTTGGACGCGGACTTGGCAGATTGCATGTCGCTGCCGGCGATTTGAGGG
TACCTTTAACTTCTGCTACCGTTTTTTTGGCGATGTTTCGTCTTTTGGAC
GAACGCTTCACAGCGGGAGCCGCCATCGTTTCTTTGGGGAGCGAGCAACG
CGGACGAAATGGGGGTGGATTGACCCGCTACTTGCAGCCGACCGCTTGGG
CTGTTGAGGTCGCGATCCCTCGACAGCGGTCGGCAGGCCGCCGCATCAAG
TCAGATCGGACATGCACATCTTCCTGGCACCGTCTGCACCGACACATGTC
CGGGTCTGACCTCTCTCTCTCTCTCTCTCTATCTATCTCTCCCTCTCTCC
GCCTACATACGTTATTCTTTCCCACCCCAAAACCCCGCTCGCTCCGCACC
TCTACGCCTTGTCCCGCCCAAAAGTTGCGCGTTCTTCAGGGGTTTGCATC
ACCGCCCCCCGCGAGTCCGCCTCGGGCTAGCCAAGGGAAGCGGCGGGGGC
TGCCTCTCTTGCGGGGGAGGGGGC
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Coding sequence (CDS) from alignment at C-linearis_contig104:454549..455372+

>mRNA_C-linearis_contig104.910.1 ID=mRNA_C-linearis_contig104.910.1|Name=mRNA_C-linearis_contig104.910.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at C-linearis_contig104:454549..455372+ (Chordaria linearis ClinC8C monoicous)
ATGAAGTCCTCCGCGGGCTCGCAGTCTAGCGACGCGGGCAGGGCTTCGTT
GTCGGCGGTGGCCGGGGGGATGGAGGATGGGGGAGAGGACCGGGAGCCAT
CGCTGGATCTGATGCACGCTCTTCGGGGGCACACGGTCAAGAACTGGCCA
ATCCGATGAAGTCCTCCGCGGGCTCGCAGTCTAGCGACGCGGGCAGGGCT
TCGTTGTCGGCGGTGGCCGGGGGGATGGAGGATGGGGGAGAGGACCGGGA
GCCATCGCTGGATCTGATGCACGCTCTTCGGGGGCACACGGTCAAGAACT
GGCCAATCCGTTGCGCGTTCTTCAGGGGTTTGCATCACCGCCCCCCGCGA
GTCCGCCTCGGGCTAGCCAAGGGAAGCGGCGGGGGCTGCCTCTCTTGCGG
GGGAGGGGGCTTGCGCGTTCTTCAGGGGTTTGCATCACCGCCCCCCGCGA
GTCCGCCTCGGGCTAGCCAAGGGAAGCGGCGGGGGCTGCCTCTCTTGCGG
GGGAGGGGGC
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