mRNA_C-linearis_contig104.901.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.901.1
Unique NamemRNA_C-linearis_contig104.901.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:398178..399612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size931
Cds size930
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927381.248864-CDS-C-linearis_contig104:398177..3986411622927381.248864-CDS-C-linearis_contig104:398177..398641Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 398178..398641 +
1690879666.7978754-CDS-C-linearis_contig104:398177..3986411690879666.7978754-CDS-C-linearis_contig104:398177..398641Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 398178..398641 +
1622927381.2601688-CDS-C-linearis_contig104:399146..3996121622927381.2601688-CDS-C-linearis_contig104:399146..399612Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 399147..399612 +
1690879666.807197-CDS-C-linearis_contig104:399146..3996121690879666.807197-CDS-C-linearis_contig104:399146..399612Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 399147..399612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.901.1prot_C-linearis_contig104.901.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 398178..399612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.901.1

>prot_C-linearis_contig104.901.1 ID=prot_C-linearis_contig104.901.1|Name=mRNA_C-linearis_contig104.901.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=310bp
GPSPAPSPPPPATSTSPPSASTSPPATSISPTSTDTPPPATSISPAPPSP
PAATAGTVEPERPAPFSGAMVGGDDSSKVEGKGGSDNPLCSSSSGGGGGR
GDPGSSNPGGDADAGADAGVGAGVGAKRPASAMDPSDDGDDDDGSAAEPP
LQLRRISREEEEPKEWNEGEGAPPEAREQPTAAAPAKGAARSTSTSTSTS
SSAPTTTTTTTTPGSAQGSRETSSGSGSRSGNGGGNSGGDGQASREDPSS
SSYSSPSSFSPSPSLPAQAQQRQPQDSSDNCGGLVGGLVGTKPGVSAGES
DPAAEAVGGE
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mRNA from alignment at C-linearis_contig104:398178..399612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.901.1 ID=mRNA_C-linearis_contig104.901.1|Name=mRNA_C-linearis_contig104.901.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1435bp|location=Sequence derived from alignment at C-linearis_contig104:398178..399612+ (Chordaria linearis ClinC8C monoicous)
GGACCGTCACCAGCCCCATCCCCGCCTCCTCCTGCCACCAGCACATCCCC
TCCTTCCGCCAGCACGTCTCCTCCTGCCACCAGCATATCTCCTACTTCCA
CCGACACACCTCCTCCTGCCACCAGCATATCCCCAGCCCCTCCTTCTCCC
CCCGCCGCCACGGCTGGAACGGTGGAGCCGGAGCGCCCGGCGCCCTTCTC
GGGCGCCATGGTTGGGGGGGACGATAGTAGTAAGGTGGAGGGTAAGGGAG
GGTCTGACAACCCCCTATGTTCGAGCAGCAGCGGCGGCGGCGGCGGCAGA
GGTGACCCTGGTTCTAGTAATCCTGGTGGTGATGCTGATGCTGGTGCTGA
CGCTGGTGTTGGTGCTGGTGTTGGTGCCAAGAGACCGGCGTCGGCGATGG
ACCCAAGCGACGACGGCGACGACGACGATGGTAGTGCCGCGGAGCCGCCC
CTCCAGCTGAGAAGGTATGTATGCGTGTGCGCATATGGTGGTTTTTCGGT
TGTGTTTCGTCCAAGATTGGAGGCTGCAGAAGAGGTGATGGTTAATTTAT
TTCGTTTTTGTTGTTTTTTGTGTTTTGGTTCTTTTCTCGCGCACAGCGGG
ATAAAAAGGCGAGCCACAAGCAGAGTTATTGATTTTCGAAGTCAGGGGCA
GGATTTGAGACAAGTGTGAACTCACAAAGACGGTTGGCTGTTTCAAGCAC
AGAGAGGCGCAGGGAAATCGTACTGAATTCAGCCGGCCGAAAAAAATTAC
GGGGGCAACAGCTCTACTGCTGTAGAAAAGACCGGCGCTTATCGAGCGTA
CACATTCAACACACGATACCGTTAGGCCCCAGCACAGAAGGCGGCACCAC
AGGCACCCAGACGACTAGAATAAAAAAAAAGATAATGCAAATTGAGGTTG
ACACACTCAAGAAGCAAGATATTAACCAGAGTGTCCTATGATACATTGCC
ACCCTCTCGATGCCGGTAGGATTTCCCGCGAGGAAGAAGAGCCAAAAGAA
TGGAATGAAGGGGAAGGGGCACCCCCGGAAGCCCGTGAGCAGCCGACCGC
CGCCGCCCCCGCCAAGGGCGCGGCACGATCCACATCGACGTCGACATCAA
CATCATCATCGGCACCCACGACAACGACGACGACGACGACACCCGGCAGC
GCCCAAGGAAGCCGGGAGACTAGTAGCGGTAGCGGCAGCAGGAGCGGTAA
CGGTGGCGGCAATAGCGGCGGTGATGGCCAAGCCTCCCGAGAAGACCCCT
CTTCCTCTTCCTATTCCTCTCCCTCTTCCTTTTCCCCTTCCCCTTCGCTG
CCAGCACAGGCGCAGCAGCGGCAGCCGCAGGACAGCAGTGATAATTGTGG
TGGTTTGGTCGGGGGTTTGGTCGGGACGAAGCCGGGAGTAAGCGCCGGCG
AGTCGGACCCTGCGGCGGAGGCGGTGGGAGGCGAG
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Coding sequence (CDS) from alignment at C-linearis_contig104:398178..399612+

>mRNA_C-linearis_contig104.901.1 ID=mRNA_C-linearis_contig104.901.1|Name=mRNA_C-linearis_contig104.901.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1860bp|location=Sequence derived from alignment at C-linearis_contig104:398178..399612+ (Chordaria linearis ClinC8C monoicous)
GGACCGTCACCAGCCCCATCCCCGCCTCCTCCTGCCACCAGCACATCCCC
TCCTTCCGCCAGCACGTCTCCTCCTGCCACCAGCATATCTCCTACTTCCA
CCGACACACCTCCTCCTGCCACCAGCATATCCCCAGCCCCTCCTTCTCCC
CCCGCCGCCACGGCTGGAACGGTGGAGCCGGAGCGCCCGGCGCCCTTCTC
GGGCGCCATGGTTGGGGGGGACGATAGTAGTAAGGTGGAGGGTAAGGGAG
GGTCTGACAACCCCCTATGTTCGAGCAGCAGCGGCGGCGGCGGCGGCAGA
GGTGACCCTGGTTCTAGTAATCCTGGTGGTGATGCTGATGCTGGTGCTGA
CGCTGGTGTTGGTGCTGGTGTTGGTGCCAAGAGACCGGCGTCGGCGATGG
ACCCAAGCGACGACGGCGACGACGACGATGGTAGTGCCGCGGAGCCGCCC
CTCCAGCTGAGAAGGGACCGTCACCAGCCCCATCCCCGCCTCCTCCTGCC
ACCAGCACATCCCCTCCTTCCGCCAGCACGTCTCCTCCTGCCACCAGCAT
ATCTCCTACTTCCACCGACACACCTCCTCCTGCCACCAGCATATCCCCAG
CCCCTCCTTCTCCCCCCGCCGCCACGGCTGGAACGGTGGAGCCGGAGCGC
CCGGCGCCCTTCTCGGGCGCCATGGTTGGGGGGGACGATAGTAGTAAGGT
GGAGGGTAAGGGAGGGTCTGACAACCCCCTATGTTCGAGCAGCAGCGGCG
GCGGCGGCGGCAGAGGTGACCCTGGTTCTAGTAATCCTGGTGGTGATGCT
GATGCTGGTGCTGACGCTGGTGTTGGTGCTGGTGTTGGTGCCAAGAGACC
GGCGTCGGCGATGGACCCAAGCGACGACGGCGACGACGACGATGGTAGTG
CCGCGGAGCCGCCCCTCCAGCTGAGAAGGATTTCCCGCGAGGAAGAAGAG
CCAAAAGAATGGAATGAAGGGGAAGGGGCACCCCCGGAAGCCCGTGAGCA
GCCGACCGCCGCCGCCCCCGCCAAGGGCGCGGCACGATCCACATCGACGT
CGACATCAACATCATCATCGGCACCCACGACAACGACGACGACGACGACA
CCCGGCAGCGCCCAAGGAAGCCGGGAGACTAGTAGCGGTAGCGGCAGCAG
GAGCGGTAACGGTGGCGGCAATAGCGGCGGTGATGGCCAAGCCTCCCGAG
AAGACCCCTCTTCCTCTTCCTATTCCTCTCCCTCTTCCTTTTCCCCTTCC
CCTTCGCTGCCAGCACAGGCGCAGCAGCGGCAGCCGCAGGACAGCAGTGA
TAATTGTGGTGGTTTGGTCGGGGGTTTGGTCGGGACGAAGCCGGGAGTAA
GCGCCGGCGAGTCGGACCCTGCGGCGGAGGCGGTGGGAGGCGAGGATTTC
CCGCGAGGAAGAAGAGCCAAAAGAATGGAATGAAGGGGAAGGGGCACCCC
CGGAAGCCCGTGAGCAGCCGACCGCCGCCGCCCCCGCCAAGGGCGCGGCA
CGATCCACATCGACGTCGACATCAACATCATCATCGGCACCCACGACAAC
GACGACGACGACGACACCCGGCAGCGCCCAAGGAAGCCGGGAGACTAGTA
GCGGTAGCGGCAGCAGGAGCGGTAACGGTGGCGGCAATAGCGGCGGTGAT
GGCCAAGCCTCCCGAGAAGACCCCTCTTCCTCTTCCTATTCCTCTCCCTC
TTCCTTTTCCCCTTCCCCTTCGCTGCCAGCACAGGCGCAGCAGCGGCAGC
CGCAGGACAGCAGTGATAATTGTGGTGGTTTGGTCGGGGGTTTGGTCGGG
ACGAAGCCGGGAGTAAGCGCCGGCGAGTCGGACCCTGCGGCGGAGGCGGT
GGGAGGCGAG
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