mRNA_C-linearis_contig104.887.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.887.1
Unique NamemRNA_C-linearis_contig104.887.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:232443..233245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size364
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927381.206084-CDS-C-linearis_contig104:232442..2326151622927381.206084-CDS-C-linearis_contig104:232442..232615Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 232443..232615 -
1690879666.7703855-CDS-C-linearis_contig104:232442..2326151690879666.7703855-CDS-C-linearis_contig104:232442..232615Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 232443..232615 -
1622927381.2187045-CDS-C-linearis_contig104:233055..2332451622927381.2187045-CDS-C-linearis_contig104:233055..233245Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 233056..233245 -
1690879666.7827263-CDS-C-linearis_contig104:233055..2332451690879666.7827263-CDS-C-linearis_contig104:233055..233245Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 233056..233245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.887.1prot_C-linearis_contig104.887.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 232443..233245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.887.1

>prot_C-linearis_contig104.887.1 ID=prot_C-linearis_contig104.887.1|Name=mRNA_C-linearis_contig104.887.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=121bp
GGCCCASFGAGGWRRARPCCRAARGDRAAARRKCQHEGGARRCALRCGGT
HQGGGGRDDRGVGERTGRETPQDQAAKRATPRQVSSRGGCLRGGGSERDE
ATGQASGEREEAGAGDHTVR*
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mRNA from alignment at C-linearis_contig104:232443..233245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.887.1 ID=mRNA_C-linearis_contig104.887.1|Name=mRNA_C-linearis_contig104.887.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=803bp|location=Sequence derived from alignment at C-linearis_contig104:232443..233245- (Chordaria linearis ClinC8C monoicous)
GGCGGGTGTTGCTGCGCAAGCTTCGGGGCCGGAGGATGGAGGAGAGCGAG
GCCTTGTTGTCGAGCTGCGAGAGGAGATCGCGCGGCTGCGCGTCGAAAAT
GCCAGCATGAAGGAGGAGCACGACGTTGCGCTCTACGATGTGGAGGAACG
CACCAGGGAGGAGGCGGAAGGGATGATCGAGGAGTTGGAGGTGAGGGGGG
GGGGGGGCTTCGTGACTGCAAGCGACCCCTTTCGGGTTTGGGTGAAAATT
GTGAGTGTGTGTTTGGGAGGCTGCAGTCTCGGCGGCACAAACGGGGCCAA
GTCGTCTTTACTTTCATGTGTTCTAGGTTGGCTTCGTTATGCTGGACGGG
TTTTGGAACGAGCGCAGAGATCTGGCGAGGCGTTTTCTGCAACTGTAAAT
GCACTTTTGTCAATGCCACAACACTTCGTGCACTTTATCTAGGACCAGTT
CCCTGTACCCTCCGGTTGGCCCTCTATGCAGTTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGTGTCATGTTCTCGAAACAAGACGG
ATCCCTCTCCCAGGAAGCACTCGCAAGACCGAAGCTAAAGAGCGTTTTGT
TTTGTTTTGTTTTGTTCTCCACCTTCTCAGAACGAACTGGAAGAGAAACG
CCTCAAGATCAGGCAGCTAAACGAGCAACTCCACGACAAGTCTCCAGTAG
GGGCGGGTGCTTGCGCGGCGGTGGCTCAGAGCGCGATGAAGCTACGGGCC
AAGCAAGCGGAGAGCGCGAGGAAGCTGGAGCGGGAGACCACACGGTACGC
TAA
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Coding sequence (CDS) from alignment at C-linearis_contig104:232443..233245-

>mRNA_C-linearis_contig104.887.1 ID=mRNA_C-linearis_contig104.887.1|Name=mRNA_C-linearis_contig104.887.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at C-linearis_contig104:232443..233245- (Chordaria linearis ClinC8C monoicous)
GGCGGGTGTTGCTGCGCAAGCTTCGGGGCCGGAGGATGGAGGAGAGCGAG
GCCTTGTTGTCGAGCTGCGAGAGGAGATCGCGCGGCTGCGCGTCGAAAAT
GCCAGCATGAAGGAGGAGCACGACGTTGCGCTCTACGATGTGGAGGAACG
CACCAGGGAGGAGGCGGAAGGGATGATCGAGGAGTTGGAGGGCGGGTGTT
GCTGCGCAAGCTTCGGGGCCGGAGGATGGAGGAGAGCGAGGCCTTGTTGT
CGAGCTGCGAGAGGAGATCGCGCGGCTGCGCGTCGAAAATGCCAGCATGA
AGGAGGAGCACGACGTTGCGCTCTACGATGTGGAGGAACGCACCAGGGAG
GAGGCGGAAGGGATGATCGAGGAGTTGGAGAACGAACTGGAAGAGAAACG
CCTCAAGATCAGGCAGCTAAACGAGCAACTCCACGACAAGTCTCCAGTAG
GGGCGGGTGCTTGCGCGGCGGTGGCTCAGAGCGCGATGAAGCTACGGGCC
AAGCAAGCGGAGAGCGCGAGGAAGCTGGAGCGGGAGACCACACGGTACGC
TAAAACGAACTGGAAGAGAAACGCCTCAAGATCAGGCAGCTAAACGAGCA
ACTCCACGACAAGTCTCCAGTAGGGGCGGGTGCTTGCGCGGCGGTGGCTC
AGAGCGCGATGAAGCTACGGGCCAAGCAAGCGGAGAGCGCGAGGAAGCTG
GAGCGGGAGACCACACGGTACGCTAA
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