mRNA_C-linearis_contig104.886.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.886.1
Unique NamemRNA_C-linearis_contig104.886.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:230664..232500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKinesin-like protein
Ec32 orthologEc-27_000130.1
Exons4
Model size983
Cds size564
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.886.1prot_C-linearis_contig104.886.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 231083..232500 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927381.1250067-UTR-C-linearis_contig104:230663..2310821622927381.1250067-UTR-C-linearis_contig104:230663..231082Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 230664..231082 -
1690879666.7205522-UTR-C-linearis_contig104:230663..2310821690879666.7205522-UTR-C-linearis_contig104:230663..231082Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 230664..231082 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927381.1349387-CDS-C-linearis_contig104:231082..2311801622927381.1349387-CDS-C-linearis_contig104:231082..231180Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 231083..231180 -
1690879666.7334652-CDS-C-linearis_contig104:231082..2311801690879666.7334652-CDS-C-linearis_contig104:231082..231180Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 231083..231180 -
1622927381.1448681-CDS-C-linearis_contig104:231295..2314991622927381.1448681-CDS-C-linearis_contig104:231295..231499Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 231296..231499 -
1690879666.7440302-CDS-C-linearis_contig104:231295..2314991690879666.7440302-CDS-C-linearis_contig104:231295..231499Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 231296..231499 -
1622927381.153632-CDS-C-linearis_contig104:231519..2317321622927381.153632-CDS-C-linearis_contig104:231519..231732Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 231520..231732 -
1690879666.75257-CDS-C-linearis_contig104:231519..2317321690879666.75257-CDS-C-linearis_contig104:231519..231732Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 231520..231732 -
1622927381.165296-CDS-C-linearis_contig104:232451..2325001622927381.165296-CDS-C-linearis_contig104:232451..232500Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 232452..232500 -
1690879666.7612627-CDS-C-linearis_contig104:232451..2325001690879666.7612627-CDS-C-linearis_contig104:232451..232500Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 232452..232500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.886.1

>prot_C-linearis_contig104.886.1 ID=prot_C-linearis_contig104.886.1|Name=mRNA_C-linearis_contig104.886.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=188bp
GPSKRRARGSWSGRPHGRPTRKLLERRTSAPAPKKSWPPRWPSGISSRPS
PREKPTAQTPRRPRPPGFSGTIPKNGPRGGSWRASLSAEAGRVEGLEDKL
RSGQEEIARLESDKQEVLSAVPPAAAAVPVPGGSSAHSTPTVGGSSEEEE
DEDFGAAEAAAAAVAAAATTALLPTNNTGRPRRGRRT*
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mRNA from alignment at C-linearis_contig104:230664..232500-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.886.1 ID=mRNA_C-linearis_contig104.886.1|Name=mRNA_C-linearis_contig104.886.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1837bp|location=Sequence derived from alignment at C-linearis_contig104:230664..232500- (Chordaria linearis ClinC8C monoicous)
GGGCCAAGCAAGCGGAGAGCGCGAGGAAGCTGGAGCGGGAGACCACACGG
TACGCTAACCCGTGGCGCCATGGGCTTGTGTTTGGTCTGGTTTGTCGTGG
TTCGGTTCTGTTTTTTTAACGCATCAAACAAGTTTTGTACGCAGTTGCAA
TCTTACGCGCCGTTTCTCTCGTTGTATTTCGCGCAATAAATTAGAGTTTG
GAAGCTCTTTCCCTCTTTAGTGCTATACACCTACGCACCTCTAAGTGGCG
CGAATGGTTCGGCAGTTTGTCCGTGCTCCGTCGAGATCGCATCCAGTCTA
GCCATCCTCTCCGGCAGGAAGCACCGTTGTCGTACATACGCCAACACGAT
TGCTTCACCGGTCAAGATTCCTAGCCAGGCCTCTGCGAGCGTTCCTCGCT
TGTCGCTGCCAAATTGGCTGGAATTACTTATAATTGACTAGATTGTTCGA
TTGGTAGCTGCACACGAGGAAAAAGAGAAAGTCTTAGCCTTGCATTGAGT
ACGGATGGAGTCTTCTCCCGGGTTCTTCAACAACAACAGGTAGAAAAGGT
TCCTCTCATCCGTGGAGTTCGCATGCCGCGCTCATTACCCCTCGCTTTCT
GCGTTCCGAAAGGCATACCACGACCCTTTGTTTCGACCAACGTCACTGGG
TTTGTTTCGCTCCACTAGACTGCACCTCTATTTTTTTGTTATTTCACCCC
CGAAAGCGCTGCTATTCCAAGCTTCCTCCACTGCTGTACGTTATTTCGTC
CACCAACAACGTATCCAGGGAGGCCGACGAGGAAGTTGCTCGAACGGCGA
ACGAGCGCGCCCGCGCCGAAGAAAAGCTGGCCGCCACGATGGCCGAGCGG
GATCAGCTCAAGACCTTCGCCGAGAGAGAAACCGACCGCGCAGACGCCGC
GGAGGCCAAGACCACCCGGGTTCTCAGGGACCATTCCGAAGAACGGTCCG
CGCGGCGGGAGCTGGAGGGCAAGTTTGAGCGGCTCGAAGAAACGGCGGCA
GCGGAGGCCGGCCGCGTGGAGGGCCTCGAGGATAAGCTTCGCTCGGGTCA
GGAGGAGATCGCCCGGCTTGAGAGCGACAAGCAGGAAGTGCTGTCGGCGG
TGCCCCCTGCGGCTGCGGCGGTGCCTGTTCCAGGGGGCAGCAGTGCGCAC
TCCACCCCGACCGTTGGGGGTAGCTCCGAGGAGGAAGAAGACGAGGACTT
CGGCGGCAGGTCGGGCGGCAGCTCGGAGAGCAGCCCTTTCGAGCACGGCG
GTAGCGGGCAGGAAGACGAGGAGCAAGACGGTTCATCGGTTATCATGCTC
AACGACTTCGGCAGAGGAAGCCGCGGAAGCAGCCGCAGCGGCAGTAGCAG
CAGCTGCAACAACGGCTCTCCTACCGACGAACAACACCGGGAGACCGAGG
AGGGGGAGGAGAACGTGACGGTCGGGGCGTCATCCCCTCCTCGTTCCGGC
AGCGCTTCCGCCGACGTCGGCGGCAACGACGACATCGGCGACATCGGCGA
CAACGACGACAGAAGCGACAACGACGACAGAAGCGAAGAAGTCGACGACG
AGGCTGCACCTCCTGCCGCAGAAAACCACGAGCCCTCATCGTTGCCGTCG
CCGCCGCCGAAGGTCGTCGCCAAGACGAGGAGCAGGAGGAGGGTGGGACA
GCTGGAGTCATTGCAGATCACAGCGAGCCCCGCGGGCGGAGCCGCCCACC
AGAGAAAGCCAAAGCAAAGGGCGGACCGCAAGCCCCTCGGGAACCTCCAG
AACGGGGCGACGCCGGCCCGAACGAAGGGCGCCAAGGGCGGCAAGAAGAA
GGTTGGCGTCGAGGAGAACCAGGAGGCGGCAGCGGTG
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Coding sequence (CDS) from alignment at C-linearis_contig104:230664..232500-

>mRNA_C-linearis_contig104.886.1 ID=mRNA_C-linearis_contig104.886.1|Name=mRNA_C-linearis_contig104.886.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at C-linearis_contig104:230664..232500- (Chordaria linearis ClinC8C monoicous)
GGGCCAAGCAAGCGGAGAGCGCGAGGAAGCTGGAGCGGGAGACCACACGG
GGCCAAGCAAGCGGAGAGCGCGAGGAAGCTGGAGCGGGAGACCACACGGG
AGGCCGACGAGGAAGTTGCTCGAACGGCGAACGAGCGCGCCCGCGCCGAA
GAAAAGCTGGCCGCCACGATGGCCGAGCGGGATCAGCTCAAGACCTTCGC
CGAGAGAGAAACCGACCGCGCAGACGCCGCGGAGGCCAAGACCACCCGGG
TTCTCAGGGACCATTCCGAAGAACGGTCCGCGCGGCGGGAGCTGGAGGGC
AAGTTTGAGCGGGAGGCCGACGAGGAAGTTGCTCGAACGGCGAACGAGCG
CGCCCGCGCCGAAGAAAAGCTGGCCGCCACGATGGCCGAGCGGGATCAGC
TCAAGACCTTCGCCGAGAGAGAAACCGACCGCGCAGACGCCGCGGAGGCC
AAGACCACCCGGGTTCTCAGGGACCATTCCGAAGAACGGTCCGCGCGGCG
GGAGCTGGAGGGCAAGTTTGAGCGCGGAGGCCGGCCGCGTGGAGGGCCTC
GAGGATAAGCTTCGCTCGGGTCAGGAGGAGATCGCCCGGCTTGAGAGCGA
CAAGCAGGAAGTGCTGTCGGCGGTGCCCCCTGCGGCTGCGGCGGTGCCTG
TTCCAGGGGGCAGCAGTGCGCACTCCACCCCGACCGTTGGGGGTAGCTCC
GAGGAGGAAGAAGACGAGGACTTCGGCGCGGAGGCCGGCCGCGTGGAGGG
CCTCGAGGATAAGCTTCGCTCGGGTCAGGAGGAGATCGCCCGGCTTGAGA
GCGACAAGCAGGAAGTGCTGTCGGCGGTGCCCCCTGCGGCTGCGGCGGTG
CCTGTTCCAGGGGGCAGCAGTGCGCACTCCACCCCGACCGTTGGGGGTAG
CTCCGAGGAGGAAGAAGACGAGGACTTCGGCGCCGCGGAAGCAGCCGCAG
CGGCAGTAGCAGCAGCTGCAACAACGGCTCTCCTACCGACGAACAACACC
GGGAGACCGAGGAGGGGGAGGAGAACGTGACCGCGGAAGCAGCCGCAGCG
GCAGTAGCAGCAGCTGCAACAACGGCTCTCCTACCGACGAACAACACCGG
GAGACCGAGGAGGGGGAGGAGAACGTGA
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