prot_C-linearis_contig103.862.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig103.862.1
Unique Nameprot_C-linearis_contig103.862.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length206
Homology
BLAST of mRNA_C-linearis_contig103.862.1 vs. uniprot
Match: D7FME9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME9_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 7.140e-10
Identity = 42/106 (39.62%), Postives = 56/106 (52.83%), Query Frame = 0
Query:  100 RTWRERGWLIMVRARHQKSLTKSKGWMAKLKRLREGRRPCSLDTCTTTASSATTSGGPVDACTLEQDASEIELAEEGMSNTSFRTAVVAVVEIEEEGLFRNIITYL 205
            R W   GWLIM+RARHQ+ L + KGW  +L++L                          +A  + +   E+EL E G S  +F  AV AVVEI EEGLFR+II++L
Sbjct:  211 RRWHAGGWLIMIRARHQRFLARPKGWPIRLRKLERFN----------------------EANIVHKIPPELELLEAGRSRMNFVRAVTAVVEINEEGLFRHIISFL 294          
BLAST of mRNA_C-linearis_contig103.862.1 vs. uniprot
Match: D8LRK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK1_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 9.430e-7
Identity = 42/111 (37.84%), Postives = 58/111 (52.25%), Query Frame = 0
Query:  100 RTWRERGWLIMVRARHQKSLTK-----SKGWMAKLKRLREGRRPCSLDTCTTTASSATTSGGPVDACTLEQDASEIELAEEGMSNTSFRTAVVAVVEIEEEGLFRNIITYL 205
            R W+ RGWL+M+RARHQ  L +     S+ W+ K    R+ R  C +    T      T+G   +     Q  ++IEL E+G  +  F  AVV+V  I EEG+FR I  YL
Sbjct:  144 RRWKRRGWLVMLRARHQIFLAQLQQNDSQPWLCK----RKLRDLCGITRVMTADDPLATAGN--EPSVGAQGIADIELNEQGTYDQEFAQAVVSVAGIMEEGIFRGITLYL 248          
BLAST of mRNA_C-linearis_contig103.862.1 vs. uniprot
Match: D8LNC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC9_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 8.430e-6
Identity = 39/96 (40.62%), Postives = 50/96 (52.08%), Query Frame = 0
Query:  110 MVRARHQKSLTKSKGWMAKLKRLREGRRPCSLDTCTTTASSATTSGGPVDACTLEQDASEIELAEEGMSNTSFRTAVVAVVEIEEEGLFRNIITYL 205
            M+RAR Q+SL +SKGW A+L++L         D       +     G        Q   EIEL E G    +F  AV A +EI EEGLFR+II+YL
Sbjct:    1 MMRARRQRSLARSKGWQARLRKLDH------YDEANIMKYAMRDFMG-------SQTPPEIELLEAGRLKMNFVRAVTAAIEIPEEGLFRHIISYL 83          
BLAST of mRNA_C-linearis_contig103.862.1 vs. uniprot
Match: D7FMF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF1_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 9.470e-6
Identity = 35/96 (36.46%), Postives = 49/96 (51.04%), Query Frame = 0
Query:  110 MVRARHQKSLTKSKGWMAKLKRLREGRRPCSLDTCTTTASSATTSGGPVDACTLEQDASEIELAEEGMSNTSFRTAVVAVVEIEEEGLFRNIITYL 205
            M+RARHQ+SL +S GW  +L++L    +                      A    +   E+EL E G S  +F  A +AVVE  EEGLFR+II++L
Sbjct:    1 MLRARHQRSLGRSTGWPVRLRKLERYNK----------------------ANIFNKIPPELELLEAGRSRMNFARAAMAVVETNEEGLFRHIISFL 74          
BLAST of mRNA_C-linearis_contig103.862.1 vs. uniprot
Match: D8LNB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB4_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.670e-5
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = 0
Query:  110 MVRARHQKSLT-KSKGWMAKLKRLREGRRPCSLDTCTTTASSATTSGGPVDACTLEQDASEIELAEEGMSNTSFRTAVVAVVEIEEEGLFRNIITYL 205
            M+RARH++S + +SKGW A+L++L        +       +     GG        Q   EIEL E G    +F  AV+AVVEI+EEGLFR+I++YL
Sbjct:    1 MMRARHERSSSARSKGWRARLRKLERYDEASIIK-----YAMRDFMGG--------QTPPEIELLEAGRLKMNFVRAVIAVVEIQEEGLFRHIMSYL 84          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.862.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FME9_ECTSI7.140e-1039.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRK1_ECTSI9.430e-737.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNC9_ECTSI8.430e-640.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMF1_ECTSI9.470e-636.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNB4_ECTSI1.670e-540.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 69..205
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..46
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 47..68
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availableTMHMMTMhelixcoord: 44..66
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:576059..579586 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.862.1mRNA_C-linearis_contig103.862.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig103 575623..582042 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig103.862.1 ID=prot_C-linearis_contig103.862.1|Name=mRNA_C-linearis_contig103.862.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=206bp
MKRDALTFFLILYWWMAAMYALCSGAAGFKEWLRRQRSQRPCSIWEVLTI
TSIFLCSAALWPLVGLYVEHQRERQRATRPAPRRAAGTSVQSCPPVHVPR
TWRERGWLIMVRARHQKSLTKSKGWMAKLKRLREGRRPCSLDTCTTTASS
ATTSGGPVDACTLEQDASEIELAEEGMSNTSFRTAVVAVVEIEEEGLFRN
IITYL*
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