mRNA_C-linearis_contig103.862.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig103.862.1
Unique NamemRNA_C-linearis_contig103.862.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig103.862.1 vs. uniprot
Match: D7FME9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME9_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 3.790e-9
Identity = 42/106 (39.62%), Postives = 56/106 (52.83%), Query Frame = 2 
Query:  449 RTWRERGWLIMVRARHQKSLTKSKGWMAKLKRLREGRRPCSLDTCTTTASSATTSGGPVDACTLEQDASEIELAEEGMSNTSFRTAVVAVVEIEEEGLFRNIITYL 766
            R W   GWLIM+RARHQ+ L + KGW  +L++L                          +A  + +   E+EL E G S  +F  AV AVVEI EEGLFR+II++L
Sbjct:  211 RRWHAGGWLIMIRARHQRFLARPKGWPIRLRKLERFN----------------------EANIVHKIPPELELLEAGRSRMNFVRAVTAVVEINEEGLFRHIISFL 294
[Close]
BLAST of mRNA_C-linearis_contig103.862.1 vs. uniprot
Match: D8LRK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK1_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 2.990e-6
Identity = 42/111 (37.84%), Postives = 58/111 (52.25%), Query Frame = 2 
Query:  449 RTWRERGWLIMVRARHQKSLTK-----SKGWMAKLKRLREGRRPCSLDTCTTTASSATTSGGPVDACTLEQDASEIELAEEGMSNTSFRTAVVAVVEIEEEGLFRNIITYL 766
            R W+ RGWL+M+RARHQ  L +     S+ W+ K    R+ R  C +    T      T+G   +     Q  ++IEL E+G  +  F  AVV+V  I EEG+FR I  YL
Sbjct:  144 RRWKRRGWLVMLRARHQIFLAQLQQNDSQPWLCK----RKLRDLCGITRVMTADDPLATAGN--EPSVGAQGIADIELNEQGTYDQEFAQAVVSVAGIMEEGIFRGITLYL 248
[Close]
BLAST of mRNA_C-linearis_contig103.862.1 vs. uniprot
Match: D8LNC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC9_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.510e-5
Identity = 39/96 (40.62%), Postives = 50/96 (52.08%), Query Frame = 2 
Query:  479 MVRARHQKSLTKSKGWMAKLKRLREGRRPCSLDTCTTTASSATTSGGPVDACTLEQDASEIELAEEGMSNTSFRTAVVAVVEIEEEGLFRNIITYL 766
            M+RAR Q+SL +SKGW A+L++L         D       +     G        Q   EIEL E G    +F  AV A +EI EEGLFR+II+YL
Sbjct:    1 MMRARRQRSLARSKGWQARLRKLDH------YDEANIMKYAMRDFMG-------SQTPPEIELLEAGRLKMNFVRAVTAAIEIPEEGLFRHIISYL 83
[Close]
BLAST of mRNA_C-linearis_contig103.862.1 vs. uniprot
Match: D7FMF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF1_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.650e-5
Identity = 35/96 (36.46%), Postives = 49/96 (51.04%), Query Frame = 2 
Query:  479 MVRARHQKSLTKSKGWMAKLKRLREGRRPCSLDTCTTTASSATTSGGPVDACTLEQDASEIELAEEGMSNTSFRTAVVAVVEIEEEGLFRNIITYL 766
            M+RARHQ+SL +S GW  +L++L    +                      A    +   E+EL E G S  +F  A +AVVE  EEGLFR+II++L
Sbjct:    1 MLRARHQRSLGRSTGWPVRLRKLERYNK----------------------ANIFNKIPPELELLEAGRSRMNFARAAMAVVETNEEGLFRHIISFL 74
[Close]
BLAST of mRNA_C-linearis_contig103.862.1 vs. uniprot
Match: D8LNB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB4_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 2.900e-5
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = 2 
Query:  479 MVRARHQKSLT-KSKGWMAKLKRLREGRRPCSLDTCTTTASSATTSGGPVDACTLEQDASEIELAEEGMSNTSFRTAVVAVVEIEEEGLFRNIITYL 766
            M+RARH++S + +SKGW A+L++L        +       +     GG        Q   EIEL E G    +F  AV+AVVEI+EEGLFR+I++YL
Sbjct:    1 MMRARHERSSSARSKGWRARLRKLERYDEASIIK-----YAMRDFMGG--------QTPPEIELLEAGRLKMNFVRAVIAVVEIQEEGLFRHIMSYL 84
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FME9_ECTSI3.790e-939.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRK1_ECTSI2.990e-637.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNC9_ECTSI1.510e-540.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMF1_ECTSI1.650e-536.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNB4_ECTSI2.900e-540.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:575623..582042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons6
Model size1205
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.862.1prot_C-linearis_contig103.862.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig103 576059..579586 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927381.014235-UTR-C-linearis_contig103:575622..5760581622927381.014235-UTR-C-linearis_contig103:575622..576058Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 575623..576058 -
1690879666.640522-UTR-C-linearis_contig103:575622..5760581690879666.640522-UTR-C-linearis_contig103:575622..576058Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 575623..576058 -
1622927381.0822046-UTR-C-linearis_contig103:579586..5796771622927381.0822046-UTR-C-linearis_contig103:579586..579677Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 579587..579677 -
1690879666.6967695-UTR-C-linearis_contig103:579586..5796771690879666.6967695-UTR-C-linearis_contig103:579586..579677Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 579587..579677 -
1622927381.0934544-UTR-C-linearis_contig103:581982..5820421622927381.0934544-UTR-C-linearis_contig103:581982..582042Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 581983..582042 -
1690879666.7110832-UTR-C-linearis_contig103:581982..5820421690879666.7110832-UTR-C-linearis_contig103:581982..582042Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 581983..582042 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927381.0239189-CDS-C-linearis_contig103:576058..5764711622927381.0239189-CDS-C-linearis_contig103:576058..576471Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 576059..576471 -
1690879666.6525166-CDS-C-linearis_contig103:576058..5764711690879666.6525166-CDS-C-linearis_contig103:576058..576471Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 576059..576471 -
1622927381.0338867-CDS-C-linearis_contig103:576804..5768711622927381.0338867-CDS-C-linearis_contig103:576804..576871Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 576805..576871 -
1690879666.6618712-CDS-C-linearis_contig103:576804..5768711690879666.6618712-CDS-C-linearis_contig103:576804..576871Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 576805..576871 -
1622927381.0503693-CDS-C-linearis_contig103:577279..5773281622927381.0503693-CDS-C-linearis_contig103:577279..577328Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 577280..577328 -
1690879666.671718-CDS-C-linearis_contig103:577279..5773281690879666.671718-CDS-C-linearis_contig103:577279..577328Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 577280..577328 -
1622927381.0599332-CDS-C-linearis_contig103:578686..5787451622927381.0599332-CDS-C-linearis_contig103:578686..578745Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 578687..578745 -
1690879666.680784-CDS-C-linearis_contig103:578686..5787451690879666.680784-CDS-C-linearis_contig103:578686..578745Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 578687..578745 -
1622927381.071791-CDS-C-linearis_contig103:579556..5795861622927381.071791-CDS-C-linearis_contig103:579556..579586Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 579557..579586 -
1690879666.6884675-CDS-C-linearis_contig103:579556..5795861690879666.6884675-CDS-C-linearis_contig103:579556..579586Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 579557..579586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig103.862.1

>prot_C-linearis_contig103.862.1 ID=prot_C-linearis_contig103.862.1|Name=mRNA_C-linearis_contig103.862.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=206bp
MKRDALTFFLILYWWMAAMYALCSGAAGFKEWLRRQRSQRPCSIWEVLTI
TSIFLCSAALWPLVGLYVEHQRERQRATRPAPRRAAGTSVQSCPPVHVPR
TWRERGWLIMVRARHQKSLTKSKGWMAKLKRLREGRRPCSLDTCTTTASS
ATTSGGPVDACTLEQDASEIELAEEGMSNTSFRTAVVAVVEIEEEGLFRN
IITYL*
back to top

mRNA from alignment at C-linearis_contig103:575623..582042-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig103.862.1 ID=mRNA_C-linearis_contig103.862.1|Name=mRNA_C-linearis_contig103.862.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6420bp|location=Sequence derived from alignment at C-linearis_contig103:575623..582042- (Chordaria linearis ClinC8C monoicous)
ATACATCACGACTTAAGCCAGCGCTGGCGTGGAGCTTTCCCAGTGGCCGG
CGTGAAGAGTGTGAGTCAGACAGCGACGACAGAGATCCTCCATACAGATT
GAGAGACAGCAGCAGCAGTGTTTTGTCCCGGTAAGCCGCGTATGCTGTCT
TTCCGAAGTACGGACGCTCTTGGGAATGAACACCGCCACCTCGTGCAGGT
AAGGCCGCGCATAGCTCTTGCCATCCGTCACGTCTAGAGGGCTACTCTCT
CTTGTGCTCTTGGTCTCTTGCCTGCGGCCAGAAAGGCTGGCAGTGGTGGT
CCCTAATCCCTGAACACGACTAGACAGACAACAGGTATCGCCTTTTCCTC
GTCGACAGTTGTATTGTCGTCGATACCGGTTGGTGGATGCTGTTTCCTAG
TCGATTGGGCCTCAGAGCGTAACCCTTTTAGTACTAGAAGCCCGTTTCGC
GACGGTTTTGGCGACACCTAACTTTGGCCACGCTGTTCTATGACCCAGAG
GTGCACTGGTAGTCTTGGAAAACCCGTACAAAGGCCTGAGGGCACCCTGC
CGAGGGGTGTGGACACTATGCCTGCCCTAGGTGTCCTCCACACAGCTCCA
CAGCAGCGCTAGGGACACAACTGAGTTGTCGTCGATATCTCAAAAATCTC
ATAAACAAATTTGGGGTGATTCCAAATTCCGTACTTTCCGCGGCTCCCCC
AGCAGTTTTGAGCCGTTGGACAGCATACACACACCGCTTCGCTGTAACTC
TCGAGGACGACCGCCTGCTGAGCATAGAGCGGGTTGGTTCGCCCGCCATG
CTCTTTCGCGTGGTGTGAGGGCTGCTTGGGTGTGTTTAAACACGCAGCAG
CCCAGCGGCCACGTCGTGCTCTAGAACAGAGAACCTCTCCCTTGTCAAGC
ACCCAAAAAAAAGTTTGGATTCTAGTTCCAAGTCAAAGTCGCCAAACCAG
AAACGAGGTTTCAAGACAGAATGCAAGTCGCCAAATGGGCGGGGTCGCCG
CAGCTGGTGTTCCGGAGAGACTGCTGATTCTCGGCCAATCAGCGGGTACG
CAGAAGGTTGCGATATTTTTTGTCCGATAACTCTTTTTTTTCAGACACCA
TGTGTTCTTAATTAAAGGGTGAAGGTTGGACCACGTTTGTTTGAAAAGGT
CCGGCTTTAAAGACCGTTGATTCTGAATTTTTCCCCTCTGAAATTGGCAC
AAAAAAGCATGCTTACGGTTCTGCGAACTTTGATCTGGCGCAAACATGTT
GGCTGTCCTGAATACCCTTTTCTTGAAGAGAATTGTCTTGGCTATCTGCC
CGTGTCTGCAGTTTCCGTTGGTTCGCACGGTGTGTACGCTTTTTTCGCGC
GAGCAAAAAAAAAACATGACATGCGCGACTGAAAATTGACCGATTTGAGA
CGATTTGAAAGTACGAAGTTCTCCAGATCGAAAGCTACTGTGCACCGCTG
CTGCTGTGCTCCGACTAGGTTCATCTAAGGTTCATAAAAGGTGTGCTCTG
CCGAAAACCCCGTCTCCAGAGACCCCAAGCGCTCTATGGCCGACGCTCGC
TGCTGACTACCGCATGCGTGCGTGCGGTCGTTTCACCCACACACGAAAAT
GCAGCTTTCCGGGTGCACGCTTGGCTTTGAACGTGCGCCAGATCACATAC
TCCGAAGTATTACTCTCTGCTCTGCTAGCGTCAGAACAAGCTACCTCGAG
CCAGCCAACATCAAGAACTGACTGAGAAATTCACGATACCATTCTTATTT
CAAACCGCAAACGTCGACTTTTCGGTGAGAGAGGACAGCTGGAGAGGAAT
CTACCGCATTTTTTTGTCGGAGATGACTCCACGTTTCGATTCGGGCCCTC
TCCTGCAATCTCTCCCCCCGATTCCCGAGATTTCAAACATGGGCAACGTG
GTCCCGGTCATGACCCAGAACCACACATCCGTTCATTGGGGGCGCCGACG
GAAAAAGTGAACACCCGCATTGATTCTCCGGAACCCCTCAAAATATTTTA
TCGGCGACTCATTGCAGATTGGTCAGCTGCGTTGCACCACACAGCTCATC
ACCACGAAGACCTTGCCACGGTAAAAGCAGGAAGTCTCGGCGCGGGCATG
ATTTGCGTCCGCAAACAGTTTCTTGCACCAACTTTGACTTTCTCCGTCCG
CTTGTTCACTTCCTTGGCGATCAATCTCGGATCGGTTGGCCGCGCCGATA
CACCCGATCACCGTTCTTCGCAAAAGAAAGGAATTGATACACGATTAACA
CGCACATGAAGTATGCGTGACAAGTGAGAAGATATAGTATACATTGCCCA
ACATCAACACTTGACACTCCTCCACTGATTGAAACGAGCTTCGGTGTTTC
TCTGTGTACCTCTAGTCTACCCCCTCAACAGGTCAATACGTGCATGATCA
CACACTGCTGAGTCAGTCCAGGGAGACTCTGACTGTTCCGAGTACCGGCT
GCGACGATGAAGAGGGATGCTCTTACCTTCTTTTTGGTAAGTAGGAATCA
GTTCCAAGTTGACGAGGCATGCATTTGAATTTCAACATTATCATGCTTTT
CAGGTAGAGGGAGGCCTTCTACAGAGATCATTGGTGTTGAGGCGCGAGAG
AAACCAAACGGCAGGGCGAGATAAGCGGGGCAGTACGTATGTATCTTGAC
GTGGCGCCTTCGTTTCAAGATTCGCTGTGCGGGCTATCGGTTGATGATAG
AGAACAAGTGTACTCCGCGCATTTTTGACCAGACGGGTGCAGTACAGGCC
CCCGCTTAAGAAATTCATTTTGAAGAATCGCAGCCTCAGAATTGTCGCAT
TTTTGAAGCGGCCGACGCTCGGCACCTGCTGCACCATAAGAAATACGTAT
CCTTCCACAACCAGCTGACACCTAGCGACCCCGGTCTATCCTACCAGCAC
AGCTTGGCCAATGCACACGATGCAGAGCTAACTTTTACCCAATTTTTTCG
CGCTACGCGCGGTAAAAACCTCGTCGGTTTAATTGGGTGTCTGCAACTAC
CTCGCGATGTAGCAACAATGCCGTTGTACATACAGCTTGAATCGTCTTAA
CGGTGGCTGAGATAAAAAAGAGGCGCTTAAGAAACATTGGCTGATGACTT
CAGCAAAACAAAAACTCAGGCTCGGCCGAAATTTCAGTTTCTTATGTTGA
AAAAAATGCTACGTACGATATGTCTGTTCGTGAGGGTTTGACCGACCTCT
TACGCCCGCCCAGCCGTTCATGCTCAGAAAGTTATGGGTAGACTAGCGGT
ATCCTTTCGAATTCTGCTGTTTTCAACGTCTGCCGTCTTGCCCTCAGATA
TTGTACTGGTGGATGGCGGCAATGTATGCTCTTTGCTCTGGAGCGGCTGG
GTTCAAGTGAGTGTTTCACAGGCGTAGTAGTGTTGCGGTATCCTTGGGGG
CTCCCCACTCGCGCTCCGTTCACCTCCGAGAGGTTCTTGAGGCATACTTC
GAAGTACGTAGTATCGTGGGCAGTGTTTGCAATATCAGCATCACATTCGA
ACAGCTTGTGGCGCGTACTTCCAAGGCGCGCCGGGGAGTGCTTCTCGAAG
GCGCAGAATATGGACAGCCGGTCAACCGCTAAGAAGGGATAATTTTGCAG
CTCGGTTCGGAATGGCTTCCATCACCCAATGCCTACAACTCGTCTCCCCG
ACAGTTGTGTGTCTGTGTTTATTTTGTTTTGTGTGTTTCCCCCCCTTATT
TCGAGCTCTCTATTCCAAAACAACACCCAATGGGAGCCCGTGGTCACAAA
ACTGAGCACACTCGTCGTAGAAAAACAAGCAAACAGAAATGCGGTGCATA
CGCGCACTACGACACTAAACGGGGCCCCGAATGGGTCTTGCGTCTCGCTG
GCGCTAAATCAGGAAATAGGGTAACTATCACTCGGACGAAAGTATTAGGT
AGGTGCAGAAAAACGAGGTACTACGCCAGGCCAGGAAAGATAGCCACATG
AAGCCGTCGAAGCCTTCCCACACCCGCCTACAATGTGTGTGTGTCACGAG
GAAGATCACGCTGAACCCATAGAGCGTACAACACTGCATTTCGGGCAAGT
GACCGAAGCCACGGCCCAATGCATGAACATGCGTTTCGACCGTTGCAATT
AAGGTAGTAGTCTCGAAAGGAAAGAATTTATAAGCATTTGTGGTTGGTCA
ATTGACACCACAACGAGCCTACCATGGATCATTTGGGGCAAATTTGGCCT
CCAGTTTTTTGTAGAGGCGCGCACAAGCGCACCCCGGCTAAACGCCTTCG
AGTTGTTACTCTGGTGTCTTCACCCCATGAACATGGCACGCGGACAGCTT
AACACGCCGTCTCGGTTTCTCATTCTTCGACTCTGCTCCAGTCCCCCCCA
CGGTAGAATTTGTCAACTTACACCCTGAATTGTTCGTGGAGGCTTGTAGG
CCGAGAGCAACATCACAGGAGGAGGAGGTGGTGGCAGGGGAACAATGCAA
GAGGAAGCAGAAAAATGCGTTCCTCGCGTTTGGCGGCCAAGAAGTCTTCG
CGCGTTGAGACCCACGAAGCAATTGTGCACGTAGCGCTCTGACCGTGCAC
AACATCAAGCAATCTGACAACCGTACCTGACACACCTACTGTAGTAGCGA
ATTCGTGCTAAAACTATACTGAAGTATATGGCCCACAAATTATGCGAAAA
TTGTTGCTGAGCCCTTTTTTTCCAACATGACCCCACCCTCGGGTCCGTGC
TGCTCTGCGCTTAGGGAGTGGTTGCGGCGTCAGCGGAGTCAGCGACCTTG
TTCAATTTGGGAGGTATGCTTGACCCTTCGTGCTCTTCTGGGTTCGAGGC
TGTTGCGCTCTCAAAACGTTTTCGCAATACGTCGAATACGGCGGCAGCCG
TCGTATGGGGTGCCCGGTAGGTGACTCTAACTTGCCCCCGGGATCATCGT
GCTACCGCAGGTTTACGTATGTCCCCACCCAGCCCTGTGAGTGGCTTGTC
CCGGAGATGCAAATGCATCGCATTTTTTGGCGTTGTACCACCCCATGTGC
TGCGTTTGCTTTAGCCATTTTCCATTGACTCCCGCAGCACCGCACTGCAA
ACTGTGGGCTGTGTGAGACGGCATTCACCACGCTATTGCCACACCCACTC
TCCCTCTCTGACTCACGGCGCCCCCGTGCCCCGCCCTCCGCCTCCGCATG
CCCTCACTCACGCACCATCAGGTGCTTACCATCACGAGTATCTTCTTGTG
TAGTGCAGCCCTCTGGCCTTTGGTGGGTTTGTACGTAGGTGAGACATGAA
GGTTCACGTCTTACCGAAATGGGCACGCTTCTATTTCATTGACGTCCGAA
GAGCCGATCCACTTTTCAATAGCCGCACTCGCAGTCGTTTGCTTCCTTAA
GATTGTGTCTGCGACCTCATGACAAGATCGGGGAACCGTCCATCCCTACC
GGCTGTCCCTCGAATGCATGAGACCGCGTCGCCGGCCGATTTCTAGCACC
GTACGACTGGAAACAACCGTGTCAATTCCGATTCTGTCAGTCGGTGTTAT
GCTTCCCCAACAGCACGAAGATACTGGGAAAACGCTTTCCCCCTGAATTT
CCCTTCCTTCGTACGTCGCAGAGCATCAAAGAGAAAGGCAAAGGGCGACA
CGGCCAGCCCCGAGACGGGCAGCGGGAACCAGTGTGCAGAGTTGCCCCCC
GGTACATGTACCCAGAACATGGCGAGAGAGGGGCTGGCTCATCATGGTGC
GCGCGCGCCACCAAAAGTCCTTGACAAAGTCCAAGGGCTGGATGGCGAAG
CTGAAACGGCTCAGAGAGGGCCGCCGACCGTGCTCCCTCGACACTTGCAC
CACCACGGCCTCATCGGCCACCACGAGCGGCGGACCCGTCGATGCATGTA
CGCTTGAGCAGGACGCTTCCGAGATAGAGCTAGCAGAGGAGGGAATGTCG
AACACAAGCTTTAGGACGGCCGTCGTAGCGGTGGTGGAGATCGAAGAGGA
AGGGCTGTTCCGAAACATCATCACGTACCTTTAGGTGGCACAGGTTGCGA
ACCCGCCTTTTTAGGCGTTACCCTTGAGGTGGCAGAAGGGAACAATCAAA
GCTTTGGACATCGACAAGTTCTCGCTCTACCGTACTAAACGAGCTAGACA
CGCTGCGTGAAGCGATACCGCCGTCCGTGTATTTGTTGGTGCCCATCGAA
TGCAGAATAAAGCAGAATAAAGTACGTAGTAAGTAGCTGGGCCGAAGGAA
TACATATCACGACTCAAGGGAGAGCTGGCGTGGAGCTTTTCCAACGGCCG
GCATTAATCTGGAGCACGAGCGATTCAGACACACCGACGACAGAGGACCT
AGAAGACTAAAGTACAGCTGACAGCATAGTTTTGTCCCTAGATAAGGCAC
GTATGCTGTCTTTCCGAAGTACGGACGCTCTTGGGGATTGAACACCGCCA
CCCCGTGCAGGTGAGTCCGC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig103:575623..582042-

>mRNA_C-linearis_contig103.862.1 ID=mRNA_C-linearis_contig103.862.1|Name=mRNA_C-linearis_contig103.862.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at C-linearis_contig103:575623..582042- (Chordaria linearis ClinC8C monoicous)
ATGAAGAGGGATGCTCTTACCTTCTTTTTGATGAAGAGGGATGCTCTTAC
CTTCTTTTTGATATTGTACTGGTGGATGGCGGCAATGTATGCTCTTTGCT
CTGGAGCGGCTGGGTTCAAATATTGTACTGGTGGATGGCGGCAATGTATG
CTCTTTGCTCTGGAGCGGCTGGGTTCAAGGAGTGGTTGCGGCGTCAGCGG
AGTCAGCGACCTTGTTCAATTTGGGAGGGAGTGGTTGCGGCGTCAGCGGA
GTCAGCGACCTTGTTCAATTTGGGAGGTGCTTACCATCACGAGTATCTTC
TTGTGTAGTGCAGCCCTCTGGCCTTTGGTGGGTTTGTACGTAGGTGCTTA
CCATCACGAGTATCTTCTTGTGTAGTGCAGCCCTCTGGCCTTTGGTGGGT
TTGTACGTAGAGCATCAAAGAGAAAGGCAAAGGGCGACACGGCCAGCCCC
GAGACGGGCAGCGGGAACCAGTGTGCAGAGTTGCCCCCCGGTACATGTAC
CCAGAACATGGCGAGAGAGGGGCTGGCTCATCATGGTGCGCGCGCGCCAC
CAAAAGTCCTTGACAAAGTCCAAGGGCTGGATGGCGAAGCTGAAACGGCT
CAGAGAGGGCCGCCGACCGTGCTCCCTCGACACTTGCACCACCACGGCCT
CATCGGCCACCACGAGCGGCGGACCCGTCGATGCATGTACGCTTGAGCAG
GACGCTTCCGAGATAGAGCTAGCAGAGGAGGGAATGTCGAACACAAGCTT
TAGGACGGCCGTCGTAGCGGTGGTGGAGATCGAAGAGGAAGGGCTGTTCC
GAAACATCATCACGTACCTTTAGAGCATCAAAGAGAAAGGCAAAGGGCGA
CACGGCCAGCCCCGAGACGGGCAGCGGGAACCAGTGTGCAGAGTTGCCCC
CCGGTACATGTACCCAGAACATGGCGAGAGAGGGGCTGGCTCATCATGGT
GCGCGCGCGCCACCAAAAGTCCTTGACAAAGTCCAAGGGCTGGATGGCGA
AGCTGAAACGGCTCAGAGAGGGCCGCCGACCGTGCTCCCTCGACACTTGC
ACCACCACGGCCTCATCGGCCACCACGAGCGGCGGACCCGTCGATGCATG
TACGCTTGAGCAGGACGCTTCCGAGATAGAGCTAGCAGAGGAGGGAATGT
CGAACACAAGCTTTAGGACGGCCGTCGTAGCGGTGGTGGAGATCGAAGAG
GAAGGGCTGTTCCGAAACATCATCACGTACCTTTAG
back to top