prot_C-linearis_contig103.858.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig103.858.1
Unique Nameprot_C-linearis_contig103.858.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length255
Homology
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BLAST of mRNA_C-linearis_contig103.858.1 vs. uniprot
Match: D7FMG4_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG4_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 1.570e-73
Identity = 145/233 (62.23%), Postives = 165/233 (70.82%), Query Frame = 0 
Query:   38 AVFVADAAGMPGSPVISHLAKSGRFSARAHR-GSSIVLALPDAADPGCRALVPYTASPPARGPAVSLPAPPPLLVLPVS-----PS-------SSCRASP----GEAEAGEAVVHRLDIPLEVFPVVFQYMDAPTLCSVSSVSREWRKQGNDDQYWRRLCRARFNVTPDSFAPPPDPIKRLYQLQHGSFKAMCRGERRISTLRGCRHGFHT-APPSISRNTSAQLLGLMMMSN 252
            AV  +DA G   + + SH++K GRFS R  R G+SIVL LP+A  PGCRALVPYTASP AR   + LPA PPLL LP S     PS       SSC +S     G  + G A   R+DIPLEVFP+ FQYMDA TLC+VSSVSREW+KQGNDDQYWR LCRARFNV PD+FAPPPDPIKRLYQLQHGSFKAMCRG+RR        HG H+ APP I R+TSAQLL  ++ SN
Sbjct:   43 AVDDSDAGGEGSTKIFSHISKGGRFSDRGEREGTSIVL-LPEAG-PGCRALVPYTASP-ARS-RLPLPAHPPLLALPPSLGCDAPSLYSSCSLSSCNSSSSSPNGSFKGGAA--RRVDIPLEVFPIAFQYMDALTLCTVSSVSREWKKQGNDDQYWRHLCRARFNVIPDAFAPPPDPIKRLYQLQHGSFKAMCRGDRR--------HGLHSGAPPVIPRHTSAQLLVGLLASN 261
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.858.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMG4_ECTSI1.570e-7362.23F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 139..179
e-value: 9.5E-4
score: 28.5
IPR001810F-box domainPFAMPF12937F-box-likecoord: 138..181
e-value: 2.5E-7
score: 30.5
IPR001810F-box domainPROSITEPS50181FBOXcoord: 133..179
score: 11.829
NoneNo IPR availableGENE3D1.20.1280.50coord: 129..221
e-value: 9.4E-11
score: 43.5
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 126..202

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:536588..539453 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.858.1mRNA_C-linearis_contig103.858.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig103 535452..540844 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig103.858.1 ID=prot_C-linearis_contig103.858.1|Name=mRNA_C-linearis_contig103.858.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=255bp
MTSPQCSPAGKEEDPGNTKEKRSHAAPRRSSRESFDAAVFVADAAGMPGS
PVISHLAKSGRFSARAHRGSSIVLALPDAADPGCRALVPYTASPPARGPA
VSLPAPPPLLVLPVSPSSSCRASPGEAEAGEAVVHRLDIPLEVFPVVFQY
MDAPTLCSVSSVSREWRKQGNDDQYWRRLCRARFNVTPDSFAPPPDPIKR
LYQLQHGSFKAMCRGERRISTLRGCRHGFHTAPPSISRNTSAQLLGLMMM
SNAM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR036047F-box-like_dom_sf