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Homology
BLAST of mRNA_C-linearis_contig103.858.1 vs. uniprot
Match: D7FMG4_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG4_ECTSI) HSP 1 Score: 234 bits (596), Expect = 3.770e-68 Identity = 159/280 (56.79%), Postives = 183/280 (65.36%), Query Frame = 1
Query: 244 LSMTSPQCSPAGKEEDPGNTKEKRSHAAPRRSS--------RESFDAAVFVADAAGMPGSPVISHLAKSGRFSARAHR-GSSIVLALPDAADPGCRALVPYTASPPARGPAVSLPAPPPLLVLPVS-----PS-------SSCRASP----GEAEAGEAVVHRLDIPLEVFPVVFQYMDAPTLCSVSSVSREWRKQGNDDQYWRRLCRARFNVTPDSFAPPPDPIKRLYQLQHGSFKAMCRGERRISTLRGCRHGFHT-APPSISRNTSAQLLGLMMMSN 1005
++ T P S AG+ G EKR H A R S RE+ D +DA G + + SH++K GRFS R R G+SIVL LP+A PGCRALVPYTASP AR + LPA PPLL LP S PS SSC +S G + G A R+DIPLEVFP+ FQYMDA TLC+VSSVSREW+KQGNDDQYWR LCRARFNV PD+FAPPPDPIKRLYQLQHGSFKAMCRG+RR HG H+ APP I R+TSAQLL ++ SN
Sbjct: 1 MATTKPS-STAGEGGGRGTGVEKRWHPASTRHSGPGTTPYRREAVD----DSDAGGEGSTKIFSHISKGGRFSDRGEREGTSIVL-LPEAG-PGCRALVPYTASP-ARS-RLPLPAHPPLLALPPSLGCDAPSLYSSCSLSSCNSSSSSPNGSFKGGAA--RRVDIPLEVFPIAFQYMDALTLCTVSSVSREWKKQGNDDQYWRHLCRARFNVIPDAFAPPPDPIKRLYQLQHGSFKAMCRGDRR--------HGLHSGAPPVIPRHTSAQLLVGLLASN 261
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 66.6 |
| Seed ortholog evalue | 1.9e-08 |
| Seed eggNOG ortholog | 67593.Physo130249 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | A Receptor for Ubiquitination Targets |
| EggNOG OGs | 2CDWZ@1,2S60F@2759,3QFI0@4776 |
| Ec32 ortholog description | F-box domain |
| Ec32 ortholog | Ec-05_000820.1 |
| COG Functional cat. | S |
| Best tax level | Peronosporales |
| Best eggNOG OG | NA|NA|NA |
| Exons | 6 |
| Model size | 2150 |
| Cds size | 765 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927380.3445566-UTR-C-linearis_contig103:535451..536587 | 1622927380.3445566-UTR-C-linearis_contig103:535451..536587 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig103 535452..536587 - |
| 1690879666.1930327-UTR-C-linearis_contig103:535451..536587 | 1690879666.1930327-UTR-C-linearis_contig103:535451..536587 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig103 535452..536587 - |
| 1622927380.4075227-UTR-C-linearis_contig103:539453..539550 | 1622927380.4075227-UTR-C-linearis_contig103:539453..539550 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig103 539454..539550 - |
| 1690879666.2671397-UTR-C-linearis_contig103:539453..539550 | 1690879666.2671397-UTR-C-linearis_contig103:539453..539550 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig103 539454..539550 - |
| 1622927380.4224281-UTR-C-linearis_contig103:540692..540844 | 1622927380.4224281-UTR-C-linearis_contig103:540692..540844 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig103 540693..540844 - |
| 1690879666.2751358-UTR-C-linearis_contig103:540692..540844 | 1690879666.2751358-UTR-C-linearis_contig103:540692..540844 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig103 540693..540844 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927380.354807-CDS-C-linearis_contig103:536587..536682 | 1622927380.354807-CDS-C-linearis_contig103:536587..536682 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 536588..536682 - |
| 1690879666.2059689-CDS-C-linearis_contig103:536587..536682 | 1690879666.2059689-CDS-C-linearis_contig103:536587..536682 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 536588..536682 - |
| 1622927380.3638709-CDS-C-linearis_contig103:537338..537460 | 1622927380.3638709-CDS-C-linearis_contig103:537338..537460 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 537339..537460 - |
| 1690879666.2163594-CDS-C-linearis_contig103:537338..537460 | 1690879666.2163594-CDS-C-linearis_contig103:537338..537460 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 537339..537460 - |
| 1622927380.3740659-CDS-C-linearis_contig103:538012..538113 | 1622927380.3740659-CDS-C-linearis_contig103:538012..538113 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 538013..538113 - |
| 1690879666.2271295-CDS-C-linearis_contig103:538012..538113 | 1690879666.2271295-CDS-C-linearis_contig103:538012..538113 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 538013..538113 - |
| 1622927380.383411-CDS-C-linearis_contig103:538667..538924 | 1622927380.383411-CDS-C-linearis_contig103:538667..538924 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 538668..538924 - |
| 1690879666.2419176-CDS-C-linearis_contig103:538667..538924 | 1690879666.2419176-CDS-C-linearis_contig103:538667..538924 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 538668..538924 - |
| 1622927380.3953993-CDS-C-linearis_contig103:539263..539453 | 1622927380.3953993-CDS-C-linearis_contig103:539263..539453 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 539264..539453 - |
| 1690879666.2537756-CDS-C-linearis_contig103:539263..539453 | 1690879666.2537756-CDS-C-linearis_contig103:539263..539453 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 539264..539453 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.858.1 >prot_C-linearis_contig103.858.1 ID=prot_C-linearis_contig103.858.1|Name=mRNA_C-linearis_contig103.858.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=255bp
MTSPQCSPAGKEEDPGNTKEKRSHAAPRRSSRESFDAAVFVADAAGMPGS PVISHLAKSGRFSARAHRGSSIVLALPDAADPGCRALVPYTASPPARGPA VSLPAPPPLLVLPVSPSSSCRASPGEAEAGEAVVHRLDIPLEVFPVVFQY MDAPTLCSVSSVSREWRKQGNDDQYWRRLCRARFNVTPDSFAPPPDPIKR LYQLQHGSFKAMCRGERRISTLRGCRHGFHTAPPSISRNTSAQLLGLMMM SNAM* back to topmRNA from alignment at C-linearis_contig103:535452..540844- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig103.858.1 ID=mRNA_C-linearis_contig103.858.1|Name=mRNA_C-linearis_contig103.858.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5393bp|location=Sequence derived from alignment at C-linearis_contig103:535452..540844- (Chordaria linearis ClinC8C monoicous) TAGACAACCGACACGTGCGCTGAGATCTCAGTTTGTATGATCACGAGAGA
GGCGGACGCTTGGTGGAGCGGCAGCGGCAGGCAGGAGGCTTGAGCGCGGC
GTCGGTGTTCAAGGCTCTGTGCGTGCGTTCGAGCTGCCTGTTCTGCACTC
AGGTACGTGCGTGATGCGTTGTCCGGGCGTGTTGGTTGAACTGCTGTCTG
TCTACAGGAGCAGTAATTCAGTAATTCGCTGGACCCAACCACGGGCGCAC
GCAAACGCGGAGGTGCATCTTCAACAAGAGCAGCCGGCGACTCGTGCTCA
CCGAAGGCTGTTGTGTGGCACTCGTGAAGCTCTCTTGTTGGTCGACTTAT
ATACGTTCGAATCGATTGCTGTTGGTATGCAACGCATCTCACCCTTAGTA
CGTCATGCGAAGGGATTATGCCAGAGCGACGTCAAAGAAGCAGACGCGCC
GCAAGAGATGGTCTACTTCTGGGCAAGCCATATTGTTATTGTTGTCTACC
CGTGCTGCGTTCCTCTGCGCTTGATCGCAATGAGTGCGTGTGTCTGTAAA
AGTTCAGACTAAATCGACCGGGGGCGAAAGCGGCGCGACTTGAACGTCAT
ACGGGATGAACCGGCACTTGTGCCGTTTGGTTCCCTCTCCCCTCTCCTCG
TTGGAGGATCACACGCATGCGTCGGTGTGTGCTTGGAGGCACACCACCTA
CTGCAGCACCAGGCACACACTACCTACTGCAGCACTATATATGCTGGATT
GCACAGGTCGCAGAACGTGTTCTGGACTGTGCCTTCTAACTGTTCGAATC
GAAGTTGCAGCTTGGCCAGTTTTTCCTCCTGTGCTCTCATCAGACGCATC
GCGCCACCAGTTTACTACTGTACTCGACTTGCGCCGAGTGCGCGCGGCAA
CCTGATATTTTGCGTGCAGCAGAGCGATCCGCATGGCAATGATCCCGGGG
CATGGTCTATTGAACTGGTGGACATGAATGGGTTAGAGGTTGCAAAGTAT
TTGCGCTTCTAATTTGAGTATTCCATGAGATAAACCCAAAGACGGGAAGC
ACGCGTGCACCATACACCGATGGGTATTCATGGAATGGTTGTGTTTTTTC
ATGCCACCTTGCATTCCAGTCCCTTCGTCTTTACCAGCAAACAGGCACGG
GACTCGATCGATCCCCGACGCCGCTTGAGGGGGAAAATCGCGTGTGGGCA
ATGGTGAGAGATTACTGAAAACAAGAAAACCCACGAGCAACCCATGCCGC
CCCCGGGCGTTTTATTCTTTTCTCTCGTCCTTTCCTCTCCGAAGCTCTCC
CTGGACAGCAAAGCGCGGCACTACAGGCATCCCAACACAACACAAGCCTG
GAGCTACCGGCACTTTGCCCTGCGAGAACGACAGGTTAAGTATGACGTCA
CCGCAATGTTCGCCGGCCGGTAAGGAGGAAGACCCCGGAAATACGAAGGA
GAAGAGGTCGCACGCTGCCCCGCGCCGGTCTTCGAGAGAGTCTTTCGATG
CCGCCGTTTTCGTTGCGGATGCGGCGGGGATGCCCGGCTCGCCAGTGATC
TCGCACCTCGCCAAGAGTGGTCGGTTTTCTGGTGAGTTTTTGCTCCACTG
GGCGAGACCTAGACAGATGCGTGGGATGCATCCAACGGCGGCGTCCGTCC
GTTTTTGGGTGGGCGAGACGTTTTTATATCAGGTACTCTGTCTAAACCAA
TTTTCTATATTTCATGGCCAAAAGGTGGGCTCTTCAACTGGTACGCATTA
TCGCCGCGCCACTACTGCTGTATACCTTGTGCAAGGGGCAGTTTGTTTCG
ACTTTCAGGCCCTGAAATCAATGTGAAAATAAATACCACCCATCACTATA
CACCCTTTTTGTTTGTTTTTTTCAATTCTCGCAAATCTTGCCGCTTCATT
TCTCTGCGGATGCTCGAAAGCAAGAGCACACCGCGGCAGCAGCATCGTGC
TAGCCCTCCCGGACGCGGCCGACCCCGGCTGCCGAGCCCTGGTGCCCTAC
ACCGCGAGCCCGCCGGCGAGGGGGCCCGCAGTATCCCTCCCCGCACCCCC
TCCCCTTCTGGTGTTGCCGGTTTCTCCATCGTCGTCATGTCGGGCTTCTC
CGGGGGAAGCTGAGGCCGGGGAGGCTGTGGTGCATCGCCTGGACATCCCC
CTGGAGGTCTTCCCCGTCGTCTTCCAGGTGCGTGGGTTTGTGTCTGTCGT
GTGCCTGGCACTTTTGTTCTTGGGTGTTTGGAATGGTGTCTCTCGCAGCT
GTTTTTAAAAGGGGAATCGGTGCGTCGGACGTTGAATCCAACCCTAGTCT
TGTGGGAACCTACTGCTGTAGTCGTCTTGTTGTTGAATCTTGTTTGACGT
GATGTGATGTCTCTCCCGCAATTCGTGGGAGGGGGGGGGGTCGGCGGACG
CGTCTTCCGGTTGTTTTCGGGTGTCCGAGTCAAACACCTGCTTTTTGATA
TGGTGCAGCTTTATCAAGCGACGCCCTCGGCCCCCGCGCGGTAAATCCCA
AGCGAGTGATGCCTTTGGGTGGGTCTTGTGGCTGCTGTACGTTTACGTTG
ATTTTCCCTAACTCGGCGGTAACACACTTGGATACGCGCCGGAGATTGGC
ATAGTTCGATATATTGAGGTCATCCCATTCCTCTCCCCTCCTATGTACGC
GCCTCTGTCGTGTGAACCTTCGCTGCACTTTTTTGGCTTCTCCGGTGGTT
CTTGGTGACCAACGAAACGGTTGCCGAACAGTACATGGACGCTCCGACGT
TGTGCAGTGTCTCGAGCGTTTCGAGGGAGTGGAGAAAGCAGGGGAACGAC
GACCAGTACTGGAGACGGCTCTGCCGCGCCAGGTTTGCGTTTTGTCACGA
AATCCGCTCGTTGTGGGTGTGTACGCCGCGATAGATTGTGCTTTTGTGGA
GGGGGTGCGAAATGTGGAGTTCGGAAGCCGCGATCTAGAGGGGTCATCAT
GGAATACGAACGCGTACAGCAGTATTGGAGATGAAGCACTTGCGAAAGTA
GCACGGGTACTTCAGACCTGGGTTGATGTCTGAGCACAAAGCTTATTTTC
CTAGACCACTACTGCAGTGGACACGATAAACGAACTCAGGGTTTGAGTAC
CCCGGAAACACGGCGTGAAAGGCTGAACAGGTAGCTCCGGGGATTCTACT
CGTGGAGAGTTGAGGGGCGGCGTCTCCACGGATGGTGATTCGCGTTGCCC
GTTCTTACCTCACAAATCGTTCGATCGATGCACAACCTAACGGCGCACTT
TCTTGCTGTTGTCTTCGTGCCTCCGTGTGCGCGATCGAAATGGATGGTAT
GCCATCATTGACGGCAACATGCACACCCAATGTGATATCGTGTGGTGGAA
ATTTGGGTATTTTTCTTGTTGGTTATTCGGGAAGGTTTAATGTGACTCCG
GACTCCTTCGCGCCTCCCCCGGACCCCATCAAGCGACTCTATCAGCTCCA
GCACGGATCGTTCAAGGCAATGTGTAGAGGTGAGCGAAGGATATCCACCC
TCAGAGGTTTTGTTTTTGGCTGTGACGGAGGTGGGTACGCTGGTCTGGAG
AAACACACCCTTCCCGAATCTGGCCTGCTCCCGTGTGGCCGTATCTAGCT
ACAAATGCGAGAGAGGCAGACACCCCGAAGGGCAACTGATGAGTATCCAG
GGGTCCGGATGAAGGCATACTTGGGGGAAGTTCTTCCGACAAAACAACGT
CCTGGTGCATGATGACCTCGGCAACAGTGCTAGCATTGAAACGACGCCTC
AAAGTCACGCGTACCACTAGTTATTTTTTGCGGATCCTGCCGTTGCTGTG
ATGGACTACAAGAAGTTGCCGGCGAGGCTTCACCCCCGGCCCCCACCTGG
ATCCCTCCGCCCCCAAACACCAAATTATTGGATATGGGACTCGTGGTCGG
TGTACCTCTCTCGATCCTTTCCGACGAGAGTTTTTTGTGCCTTGTTGTGG
CGCGGCACTCTTGTGATCGCGGGCCGTGATTTGCCTGGGTTTGGCGCGGG
GCATTTTCGCATTATTTTCGGAGTATCGAAGTATTGTGGAAGAATCAGCA
ACAAACAGAAGCTGAGCGTTATTTTTGGTTCTGTTCCGTTCGTTCCGTTC
CGGTTTCTTGTTTTTTTTGTTTCTTCGCTAATTTTGTCATGAAAATTCGA
CACCAACGAAAGGATGCCGCCACGGCTTCCACACGGCGCCCCCGTCCATC
TCCCGGAACACGTCGGCGCAGCTACTGGGGCTGATGATGATGTCGAACGC
CATGTAAACAAGACCGACAGCACAGCACAATCAAGCGAGACGCACGAAGT
ACCTTTTTTCCCCCCCTTTTTTGTCGTTTTTCCAAGTAGAAGGCGGGCGA
TGCTAGGTACCGATTGTGTTGATAGTGCACAGCTGGCGGGGCCACTATAT
ACGGCGTGTTTGAGTTTATCCTACGTACATAGCTGGGGCCTGTATTCTCG
GCGATGTTCAGGTCAGAAGTTTTGGTTTTGGCCCCCAGCATTTCGCCCGT
CTGCCTTGTGTCTACGCTGTAAGTTGCTGGCGTAATGCTTAGCACTGTTT
TGTTTTTTTGTCGAGTTGACCTCAATGTAAAAAATGTGATGGTAGGGAAA
TGAGTAGACACGGCCCCGGCAACGAGGTTGTGTTCCAACTTTTTCGGTCT
GTATTTGGTGAGATATGCGGTTCCCGCAGGGCTGAAAGGGGAACGGGTCG
TGCCCCTGTTGCGAACGGGCGGCATTTGTTTTTTTATACATCAAAACGAC
ATCAAAGACATTTTTGTCTCAACGTTAGGCATCTACTATTTGCGCCATGC
TTAAAAAAACGATTTTGCAGCGGCTCGTGAGCAATTTACACATTTACCGA
GACAAATGTGCATGTACAAAATGCTGGTGTGAGCATGGAAAATGCTCCAT
TGATGATACACTCGGTCTTATTGGAAGAGGATCGAGTGTTGTAGAGATAG
GGCGATGCCGGGCAAAGGTTAGGTTTGGGTAGCCGTAGTCGTATCGCAGT
GCCTTCGTCGGACGCTTTGTTTTCGCACGTTTCCGCTCAACGGGAGACAG
GACACCAGACCCAACGACAGGCACCTATTGTCCTGCCTTAGCCAATACGT
AAACTTCGTACGTAGTTACACCGGTTGTGTGCTTCTTGTGTGCGCATCAT
CTCTGAACTTTGTTGGTGGGGAGCAATCGACGGGTTCGCCAGCGTTTAAG
GGTACCACGGTCTAGCCGTAGAGGACAGAGTCTTCGCGTTCCGAATCCAG
AGGTAGCTAGTTTCAGGTTTTTTTCTTTTTTGGTGTAAATTTCACGTACT
AGGTAGATGGCGATTAGCACTGAATTGGGTACCACATGGTATATGCGTAA
ATATGGACGAATGTAGATGTTAAGTAGATGGAGGTTTCCCCCC back to topCoding sequence (CDS) from alignment at C-linearis_contig103:535452..540844- >mRNA_C-linearis_contig103.858.1 ID=mRNA_C-linearis_contig103.858.1|Name=mRNA_C-linearis_contig103.858.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at C-linearis_contig103:535452..540844- (Chordaria linearis ClinC8C monoicous) ATGACGTCACCGCAATGTTCGCCGGCCGGTAAGGAGGAAGACCCCGGAAA TACGAAGGAGAAGAGGTCGCACGCTGCCCCGCGCCGGTCTTCGAGAGAGT CTTTCGATGCCGCCGTTTTCGTTGCGGATGCGGCGGGGATGCCCGGCTCG CCAGTGATCTCGCACCTCGCCAAGAGTGGTCGGTTTTCTGATGACGTCAC CGCAATGTTCGCCGGCCGGTAAGGAGGAAGACCCCGGAAATACGAAGGAG AAGAGGTCGCACGCTGCCCCGCGCCGGTCTTCGAGAGAGTCTTTCGATGC CGCCGTTTTCGTTGCGGATGCGGCGGGGATGCCCGGCTCGCCAGTGATCT CGCACCTCGCCAAGAGTGGTCGGTTTTCTGCAAGAGCACACCGCGGCAGC AGCATCGTGCTAGCCCTCCCGGACGCGGCCGACCCCGGCTGCCGAGCCCT GGTGCCCTACACCGCGAGCCCGCCGGCGAGGGGGCCCGCAGTATCCCTCC CCGCACCCCCTCCCCTTCTGGTGTTGCCGGTTTCTCCATCGTCGTCATGT CGGGCTTCTCCGGGGGAAGCTGAGGCCGGGGAGGCTGTGGTGCATCGCCT GGACATCCCCCTGGAGGTCTTCCCCGTCGTCTTCCAGCAAGAGCACACCG CGGCAGCAGCATCGTGCTAGCCCTCCCGGACGCGGCCGACCCCGGCTGCC GAGCCCTGGTGCCCTACACCGCGAGCCCGCCGGCGAGGGGGCCCGCAGTA TCCCTCCCCGCACCCCCTCCCCTTCTGGTGTTGCCGGTTTCTCCATCGTC GTCATGTCGGGCTTCTCCGGGGGAAGCTGAGGCCGGGGAGGCTGTGGTGC ATCGCCTGGACATCCCCCTGGAGGTCTTCCCCGTCGTCTTCCAGTACATG GACGCTCCGACGTTGTGCAGTGTCTCGAGCGTTTCGAGGGAGTGGAGAAA GCAGGGGAACGACGACCAGTACTGGAGACGGCTCTGCCGCGCCAGTACAT GGACGCTCCGACGTTGTGCAGTGTCTCGAGCGTTTCGAGGGAGTGGAGAA AGCAGGGGAACGACGACCAGTACTGGAGACGGCTCTGCCGCGCCAGGTTT AATGTGACTCCGGACTCCTTCGCGCCTCCCCCGGACCCCATCAAGCGACT CTATCAGCTCCAGCACGGATCGTTCAAGGCAATGTGTAGAGGTGAGCGAA GGATATCCACCCTCAGAGGTTTAATGTGACTCCGGACTCCTTCGCGCCTC CCCCGGACCCCATCAAGCGACTCTATCAGCTCCAGCACGGATCGTTCAAG GCAATGTGTAGAGGTGAGCGAAGGATATCCACCCTCAGAGGATGCCGCCA CGGCTTCCACACGGCGCCCCCGTCCATCTCCCGGAACACGTCGGCGCAGC TACTGGGGCTGATGATGATGTCGAACGCCATGTAAGATGCCGCCACGGCT TCCACACGGCGCCCCCGTCCATCTCCCGGAACACGTCGGCGCAGCTACTG GGGCTGATGATGATGTCGAACGCCATGTAA back to top
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