mRNA_C-linearis_contig103.857.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig103.857.1
Unique NamemRNA_C-linearis_contig103.857.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 3.620e-66
Identity = 178/430 (41.40%), Postives = 220/430 (51.16%), Query Frame = 3
Query:  669 ALKIGSNAANAISFVADLGEELQFLSPVLNTFQAIRNKAETARSNQEEL*APKERCLYITACIVGERRQN-------PSSDMCR---------------------------------------GDMEV----------------CRGLQQTGQESTDRKQDQP-----------LSNDPKPSVKLANVPDDLPARKSWHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQVLSI*IVWLTANDGVKQRLPSLMLRLAPMLYGDIGGSLGRHPA--QNGLRCSLQLAADGGRSWGQRAEVSCGYG*RVGEGSVEA----TGDWNVRSPVDPR-PSAGNGL*GLSVDELSKADAQSVLRKAAELTPEVGLLEDAVNLIELCGRVAMD*AFFVGRWSAVRSRKDRKSWSGAILRER 1718
            A K+GS AA+ I FVADLGEEL  L PVL T + IR K ET + N E+L    +RC YITAC + + R         P  D                                          GD+ +                C  +    QE   +KQ+             L   PKP  K+ANVP   P  KSWHVER +V ETV +AL +DG P LVGLVGDSG+GK TAAS IV S  +R+  S  IVWL  N+GV   LP LML+LA M++ DIGGS+GR P+   +GL    Q   +G    G +  V       V E  V +    TG W + S  D       NG   + VDELS+A+A+SVLR+AAEL+PE  L +DA +LIELCGRVAMD AF VGRWS VR R+DR +WS A  + R
Sbjct:   16 ASKMGSAAADVIQFVADLGEELPLLQPVLRTLRIIREKVETVKRNPEDLTVLHQRCTYITACFIVKCRHGYTELDVAPLEDCVNAVEKFVERYRKRGKISRVLKAVGDKGDIVQLKERLRDLEGDLSLAGIASLAKYLIADPKPCSPVAFAFQERMGKKQEGNHEELLAKTETILRQLPKPPAKVANVPKGTPTHKSWHVERRNVTETVFQALDADGGPHLVGLVGDSGAGKTTAASAIVSSIVVRETFSDGIVWLPVNEGVHDNLPCLMLQLAQMVFEDIGGSVGRRPSGSDDGLAYVKQQVENGHGGKGLKCLVVAD---NVWESDVVSQLLETGMWILLSTRDEELVKRANGE-VVGVDELSEAEAESVLRRAAELSPEARLPDDAKDLIELCGRVAMDLAF-VGRWSTVRGRQDRTAWSDAACKVR 440          
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 2.670e-61
Identity = 168/408 (41.18%), Postives = 216/408 (52.94%), Query Frame = 3
Query:  651 AEAG*PALKIGSNAANAISFVADLGEELQFLSPVLNTFQAIRNKAETARSNQEEL*APKERCLYITACIVGERRQ----------------------------------------------NPSSDMCRGDM-----EVCRGLQQTGQESTDRKQDQPLSNDPKPSVKLANVPDDLPARKSWHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQVLSI*IVWLTANDGVKQRLPSLMLRLAPMLYGDIGGSLGRHPA--QNGLRCSLQLAADGGRSWGQRAEVSCGYG*RVGEGSVEA----TGDWNVRSPVDPRPSAGNGL*GLSVDELSKADAQSVLRKAAELTPEVGLLEDAVNLIELCGRVAMD*AFFVGRWSAVRSRKDRKSWSGA 1703
            AEA   AL+IGS  ++A+S   DLGEEL  + PV  T +AIR   ET ++N+EEL A ++RC YITAC V + R                                               N S D    D+      V  G     +++ DR  DQ L + P+   KLA VP   P RKSWHVER H M TVL+AL    R  +V L G SGSGK T A++IVRS  +R+  S  IVWL  N+G K+RLPSLML+LA M++ +IGGS+GR P+  ++      Q   +G +    +  V       V E  V +    TG W + S  D      +    + VDELS+ADA+SVL++AAEL  E  L +DAV+LI+LCGRVAMD AF VGRWS VR R D  SWS A
Sbjct:   10 AEAARLALEIGSTISDAVSCAVDLGEELPVIKPVFKTLKAIRTTVETVKNNREELAALEQRCTYITACFVVKCRLIESEVDVAPLKDCVEAAKNFAERCSRRGKVSRVIKAFSDKSEIAGLNSSVDRLTTDLGLAGIAVLEGKVDDMKKTLDRI-DQRLESLPRSFGKLAAVPMGAPVRKSWHVERRHAMATVLDALNGSDRACVVALAGYSGSGKTTVAAEIVRSTEVREAFSDGIVWLPVNEGAKKRLPSLMLQLARMVHEEIGGSVGRVPSASEDSATYIKQRLEEGHKGRRLKCLVVAD---NVWEEDVVSKLVETGMWVLLSTRDEAVVKRSRGKAVVVDELSQADAESVLKRAAELPRESRLPDDAVDLIKLCGRVAMDVAF-VGRWSTVRGRHDPASWSDA 412          
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: A0A6H5J759_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J759_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 2.960e-59
Identity = 150/340 (44.12%), Postives = 194/340 (57.06%), Query Frame = 3
Query:  771 IRNKAETARSNQEEL*APKERCLYITACIVGE-RRQNPSSDMCRGDMEVC-------------RGLQQTGQ-ESTDRKQ---DQPLSND--PKPSVKLANVPDDLPARKSWHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQVLSI*IVWLTANDGVKQRLPSLMLRLAPMLYGDIGGSLGRHPAQNGLRCSLQLAADGGRSWGQRAEVSCGYG*RVGEGSVEA----TGDWNVRSPVDPRPSAGNGL*GLSVDELSKADAQSVLRKAAELTPEVGLLEDAVNLIELCGRVAMD*AFFVGRWSAVRSRKDRKSWSGAILRER 1718
            +R   ET    ++EL A ++RC Y+TACI+ + R  +P S      +E C             R ++Q  Q ++  RK+   +Q +  D  PKP +K A VP   P RKSWHVER HV ETV+EALT +  PRLVGLVGDSG+GK TAA+++VRS  +R+  S  IVWLT N G  +RLPSLML+LA M+  DIGG +G HP ++G      +        G +          V E  V +    TG   + S        G     + +DELS  DA+SVLR AAEL P V L +DAV+LI+LCGRVAMD AF VGRWS VR R DR +WS A  + R
Sbjct:    1 MRETVETVYQTRDELAALEKRCTYMTACIIAKFRHAHPGSAPNVSPLEDCVMEAEKFVERRKKRTMEQMVQNQAAARKELLANQEIIIDRLPKPPIKKAYVPQGTPTRKSWHVER-HVTETVVEALTGEAGPRLVGLVGDSGAGKTTAAAELVRSNVVRESFSDGIVWLTVNYGANKRLPSLMLQLARMVQEDIGGRVGGHPNESGGNADAYIKQRMENGHGGKGLKCLAVADNVWEKEVVSMLLKTGMTVLLSTRHEELVTGARGVPVRLDELSARDAESVLRSAAELPPAVRLPDDAVDLIDLCGRVAMDLAF-VGRWSTVRGRHDRVAWSDAAAKVR 338          
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 3.680e-53
Identity = 127/247 (51.42%), Postives = 159/247 (64.37%), Query Frame = 3
Query: 1002 LANVPDDLPARKSWHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQVLSI*IVWLTANDGVKQRLPSLMLRLAPMLYGDIGGSLGRHPA--QNGLRCSLQLAADGGRSWGQRAEVSCGYG*RVGEGSVEA----TGDWNVRSPVDPR--PSAGNGL*GLSVDELSKADAQSVLRKAAELTPEVGLLEDAVNLIELCGRVAMD*AFFVGRWSAVRSRKDRKSWSGAILRER 1718
            LA VP   PARKSWHVER HVM  V +AL  +G PRLVGLVGDSGSGK TAA++IVRS  +R+  S  IVWL+ NDG  +RL +LM+ LA +++ DIGGS+GR PA   +G   + Q    G    G +  V       V E +V +    TG W + S  D     SA  G+  + VDELS+ DA SVLR+A+EL+PE+ L ++AV L+ELCGRVAMD AF VGRWS VR R DR +WS A  + R
Sbjct:  178 LATVPAGTPARKSWHVERRHVMRAVCDALPGEGGPRLVGLVGDSGSGKTTAAAEIVRSTEVREAFSDGIVWLSVNDGATERLRALMMHLARVVFEDIGGSVGRRPAGLDDGAAYTRQRMQSGHGGKGLKCLVVAD---NVWEEAVISKLLETGMWVLLSTRDEALVRSAEGGV-VVGVDELSEEDAMSVLRRASELSPELRLPDEAVELVELCGRVAMDVAF-VGRWSTVRGRSDRTAWSDAAHKVR 419          
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 1.310e-51
Identity = 127/245 (51.84%), Postives = 151/245 (61.63%), Query Frame = 3
Query:  987 KPSVKLANVPDDLPARKSWHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQVLSI*IVWLTANDGVKQRLPSLMLRLAPMLYGDIGGSLGRHPA--QNGLRCSLQLAADGGRSWGQRAEVSCGYG*RVGEGSVE----ATGDWNVRSPVDPRPSAGNGL*GLSVDELSKADAQSVLRKAAELTPEVGLLEDAVNLIELCGRVAMD*AFFVGRWSAVRSRKDRKSWSGA 1703
            K   KLA +P   P RKSWHVER +VME V EALT+ G P LVGLVGDSGSGK TAAS+IVRS  +RQ  S  +VWLT N G K RLPSLML+LA M+  ++GG   R PA   +G     +    G    G +  V       V E  V      TG W + S  D     G+    + VDE+S+ +A+SVLRKA+EL PE  L +DAV+LIELCGRVAMD AF VGRWS VR R DR +WS A
Sbjct:  195 KTPAKLAKIPKATPIRKSWHVERLYVMERVFEALTAVGGPHLVGLVGDSGSGKTTAASEIVRSNEVRQAFSDGVVWLTVNHGAKDRLPSLMLQLAHMMCEEVGG---RRPATSDDGAAYIKEKMQRGHGGKGLKCLVVAD---NVWEKEVVWKLLETGMWVLLSTRDEELVVGSEGEVVGVDEMSEVEAESVLRKASELPPETRLPDDAVDLIELCGRVAMDLAF-VGRWSTVRGRSDRTAWSDA 432          
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 2.550e-51
Identity = 126/257 (49.03%), Postives = 158/257 (61.48%), Query Frame = 3
Query:  987 KPSVKLANVPDDLPARKSWHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQVLSI*IVWLTANDGVKQRLPSLMLRLAPMLYGDIGGSLGRHPAQNGLRCSLQLAADGGRSWGQRAEVSCGYG*RVGEGSVEA----TGDWNVRSPVDPRPSAGNGL*GLSVDELSKADAQSVLRKAAELTPEVGLLEDAVNLIELCGRVAMD*AFFVGRWSAVRSRKDRKSWSGAI--LRERLFVRGSG 1739
            K   KL  VP   PARKSW+V+R HVM+TV E L SDG PRLVGLVG SGSGK T AS+ VRS  +++  S  I WL+ NDG K+RL SLML+LA ++Y DIG S+GR P  +   C+  +     +  G +          V E  V +    TG W + S  +           + VDELS+ADA SVLR+AAEL P+  +  DAV+LIELCGRVAMD AF VGRWS VR R+DR +WS A+  +RE +   GSG
Sbjct:   28 KTQAKLTKVPKGTPARKSWYVKRRHVMDTVFEGLASDGGPRLVGLVGGSGSGKTTVASESVRSTEVQEAFSDGIAWLSVNDGAKERLSSLMLQLARVVYEDIGCSVGRRPTSSD-DCAAYIRQRMKKGTGGKKLKCLVVADNVWEKEVVSKLLETGMWVLLSTRNITLVTEAHGEVVGVDELSEADAMSVLRRAAELPPQGKIPGDAVDLIELCGRVAMDLAF-VGRWSTVRGRQDRMAWSDAVSKVREEMGKVGSG 282          
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: A0A6H5KJ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ30_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 1.270e-39
Identity = 151/422 (35.78%), Postives = 192/422 (45.50%), Query Frame = 3
Query:  669 ALKIGSNAANAISFVADLGEELQFLSPVLNTFQAIRNKAETARSNQEEL*APKERCLYITACIVGERRQNPSSDMCRGDMEVCRGLQQTGQ----------------ESTDRKQ---------------------------------------------DQPLSNDP-------KPSVKLANVPDDLPARKSWHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQVLSI*IVWLTANDGVKQRLPSLMLRLAPMLYGDIGGSLGRHPAQNGLRCSLQLAADGGRSWGQRAEVSCGYG*RVGEGSVEA----TGDWNVRSPVDPRPSAGNGL*GLSVDELSKADAQSVLRKAAELTPEVGLLEDAVNLIELCGRVAMD*AFFVGRWSAVRSRKDRKSWSGAILRER 1718
            ALK+GS   ++I+FVADL E+L F                    NQEEL     RC+++T C++ + RQ+  S+M    +E C  L+  G+                 S+D+ Q                                             +  L+N         K   K A +P   P  KSWHVER  V+E V E LT+DG P LVGLVGDSGSGK TAAS+IVRS                N+    RLPSLML+LA M+Y +IGG   R PA +    +  +     R  G       G    V E  V       G W + S  D     G     + V+ELS+ +A+SVLRKAAEL PE  L +DAV+LIELCGRVAMD AF  GR S VR R DR +WS A  + R
Sbjct:   16 ALKMGSATVDSITFVADLCEDLPF-------------------ENQEELQTLYRRCVFLTTCVIVKSRQSSFSEMDVSPVEEC--LEAAGELVERCGGRGKMTRVLNASSDKDQIARMKANIRDLEANLSLAGVAILEGKTSDLRATVERMAKIQAATQEVILANTEIITDRLSKTPAKPAKIPKSTPIWKSWHVERFDVVERVFEPLTADGGPPLVGLVGDSGSGKTTAASEIVRS----------------NED---RLPSLMLQLAHMVYEEIGG---RRPATSDDGTAY-IKERMHRGHGGEGLKCLGVVDNVWEKEVVCELLEAGMWVLLSTRDEELVTGWEGEVVEVNELSEVEAESVLRKAAELPPETRLPDDAVDLIELCGRVAMDLAFG-GRLSTVRGRSDRTAWSKAASKVR 392          
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: D7G5K4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K4_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.990e-31
Identity = 67/115 (58.26%), Postives = 84/115 (73.04%), Query Frame = 3
Query:  984 PKPSVKLANVPDDLPARKSWHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQVLSI*IVWLTANDGVKQRLPSLMLRLAPMLYGDIGGSLGRHPAQNG 1328
            PKP  K A++P   P RKSWHVER HVM+TV+EALT +  P LVGLVGDSG+GK TAAS++V S  +R+  S  IVWL  N G  +RLPSLML+LA M++ DIGG +G  P ++G
Sbjct:  191 PKPPTKKADIPQGTPMRKSWHVERRHVMDTVVEALTGEAGPHLVGLVGDSGAGKTTAASELVGSNVVRESFSDGIVWLAVNYGANKRLPSLMLQLARMVHEDIGGCVGGRPNESG 305          
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: A0A6H5K498_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K498_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 6.650e-28
Identity = 75/130 (57.69%), Postives = 82/130 (63.08%), Query Frame = 3
Query: 2187 GEAKRSRAALGEALQVRRS*GVLPSSH*ELHPAVRVVEGDTAGGESSSRPGVEGVLARAVGVPAEGGFGGFQTTDSLAYVWQ*LHTAVTVAGGAGESVTATG*SIQERSG-EDRHGGRAVSTVLPCC*SG 2573
            G+ +   AAL +        GV PSSH EL PAV V EG+TAGGESSSRPGVEG L R V VPA GGFG FQ T+SL  ++         AG  GESVTAT  SIQ RSG E    GR VSTVLPCC SG
Sbjct:   21 GQGQEGSAALQDGAAGAAEMGVPPSSHRELCPAVVVREGNTAGGESSSRPGVEGALVRDVEVPAAGGFGAFQDTNSLRSMFGSACVQQPAAGDTGESVTATDQSIQGRSGGECSTDGRVVSTVLPCCSSG 150          
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: A0A6H5KRI5_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI5_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.720e-25
Identity = 62/119 (52.10%), Postives = 77/119 (64.71%), Query Frame = 3
Query:  963 DQPLSNDPKPSVKLANVPDDLPARKSWHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQVLSI*IVWLTANDGVKQRLPSLMLRLAPMLYGDIGGSLGRHPA 1319
            DQ L + P+   K A VP     RKSWHVER HVM TVL+AL    R  +V L G SGSGK T A++IVRS  +R+  S  I WL    G K+RLPSLML+LA  ++ +IGGS+GR P+
Sbjct:    9 DQRLESLPRSLGKQAAVPIGAHVRKSWHVERRHVMATVLDALNGSDRACVVALAGYSGSGKTTVAAEIVRSAEVREAFSDGIAWLPVYQGAKERLPSLMLQLARKVHEEIGGSVGRVPS 127          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRK8_9PHAE3.620e-6641.40NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
D7FZW8_ECTSI2.670e-6141.18NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5J759_9PHAE2.960e-5944.12NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KLK9_9PHAE3.680e-5351.42NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
D7FZY7_ECTSI1.310e-5151.84NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KYW3_9PHAE2.550e-5149.03NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5KJ30_9PHAE1.270e-3935.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5K4_ECTSI1.990e-3158.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K498_9PHAE6.650e-2857.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRI5_9PHAE2.720e-2552.10NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:528551..531755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue4.5e-17
Seed eggNOG ortholog2880.D7FZZ7
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons2
Model size2652
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.857.1prot_C-linearis_contig103.857.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig103 529441..530308 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927380.2607713-UTR-C-linearis_contig103:528550..5294401622927380.2607713-UTR-C-linearis_contig103:528550..529440Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 528551..529440 +
1690879666.1434307-UTR-C-linearis_contig103:528550..5294401690879666.1434307-UTR-C-linearis_contig103:528550..529440Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 528551..529440 +
1622927380.3031695-UTR-C-linearis_contig103:530308..5317551622927380.3031695-UTR-C-linearis_contig103:530308..531755Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 530309..531755 +
1690879666.1809156-UTR-C-linearis_contig103:530308..5317551690879666.1809156-UTR-C-linearis_contig103:530308..531755Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 530309..531755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927380.2767255-CDS-C-linearis_contig103:529440..5294921622927380.2767255-CDS-C-linearis_contig103:529440..529492Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 529441..529492 +
1690879666.155817-CDS-C-linearis_contig103:529440..5294921690879666.155817-CDS-C-linearis_contig103:529440..529492Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 529441..529492 +
1622927380.2891638-CDS-C-linearis_contig103:530045..5303081622927380.2891638-CDS-C-linearis_contig103:530045..530308Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 530046..530308 +
1690879666.169044-CDS-C-linearis_contig103:530045..5303081690879666.169044-CDS-C-linearis_contig103:530045..530308Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 530046..530308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig103.857.1

>prot_C-linearis_contig103.857.1 ID=prot_C-linearis_contig103.857.1|Name=mRNA_C-linearis_contig103.857.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=105bp
MCRGDMEVCRGLQQTGQESTDRKQDQPLSNDPKPSVKLANVPDDLPARKS
WHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQ
VLSI*
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mRNA from alignment at C-linearis_contig103:528551..531755+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig103.857.1 ID=mRNA_C-linearis_contig103.857.1|Name=mRNA_C-linearis_contig103.857.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3205bp|location=Sequence derived from alignment at C-linearis_contig103:528551..531755+ (Chordaria linearis ClinC8C monoicous)
CGTTGGTGTCGGTTCCCTCTAGAAAGCAAGAGCAGAAACTATAAAAAAAA CTTACCCAGAGTTCCAACTTTAGAAACAAATTGACGCCATGGTTGTTTCA CAATGTGTTTTAAAAGTCTTGTCTGCTGGAAAGTCTGTGCACAAGTTGGC TGCTGTCAGCAGATGCCTGCCCCGTCGTAGAGTACCGAAGTTGTCCGGGC AAGACACAAGGCACCGTGTTCGCGCTGAATGGTGCACAGTCTGGGTTGGG GGGCACGTAATCGTAGTCGGCCCTGGATCGAATCCGTGACAAACCCTTCT CATCGCGGTGACATTTGAACATCTGTGCACCGCACGTATCTGCCGAAAGT GAGTTCAAAGTGACCCTGAAGGCTGTCACGACTCAACCCTGCTTCGAGCT GTTATCCTGATGATAATCGATTTTTTTAGTTCGTTTGCTAACGTGCGGTT TGGATTCGCCGTCGGGTTTCTTACAACCCGTGTACGACAGATGAGAACAG AATGGCTCTGCTGCAGAGCCTGCTGTATCCTCCGCTACCCACCTCGTTGG CGTTTACTCATTATGTTAGCAACAGGTTGAATTAACGACGGGGCTACCAC TCCTGGGGGGATGGCTGGCGGCTTGAGCGATGCTGCCGCCGAAGCTGGGG GCCGAGGCTGGGTAGCCAGCACTTAAAATAGGCTCCAATGCAGCAAACGC GATCTCGTTCGTGGCTGACTTGGGAGAGGAGCTGCAATTTCTTAGCCCCG TGTTGAACACCTTCCAGGCCATCCGCAACAAAGCAGAGACCGCGAGAAGC AATCAGGAGGAGCTGTAAGCGCCGAAAGAGAGGTGCCTGTACATCACGGC ATGCATCGTCGGCGAGCGTAGGCAGAACCCCAGCTCGGACATGTGTCGAG GCGATATGGAAGTTTGTCGAGGGCTGCAGCAAACGGGGCAAGGTACCGAG GATATCGACTCCAGCGGCAAGAACGGGATCTCTGGGTTGAACGCACATGT CGACCGTTTGAGGGGTGACCTGGGCCTGGCGCTTATTGCCGTCCTCGAGG GGAAGACCGATAGCATGACGGCAAAGCTGATAAGGCTTGATCGCGTCGGT GTTGTGTTTGTCCCACCGTCAATTCTGTTCTCGACAACGTGTGCCCAGAA GGTTGGCTTTACCAGACGCTCTAAATAGTGTCAACATGGGCTCTAAAATG ACGCCCAACACTTTCGTGAATCCAAGGCATTATTTTTGTCGTGAGCCTTT TGAACAGGTTCTGTTTTGTTCAAACCCATGTACATCCTGCAAGGGCCGAA GAGATTGAGTATTGAAATATGTCGGACCAAACCACGCCGCCCTCGGCCGC ATGCCGTCGATTTTTTCTCTTCGACAATATGATGATGTTACCGCGGCAGA TGTTTTCAGATGCTAGATTCGTTTTATCGCTCCGGTGGCCCTTATATTCT TATGCGCCCTTCGTTCGCCGCACTCCCCCACCGCATGCTTCCAAGAGAGC ACAGACAGGAAACAAGACCAACCGTTGAGCAATGATCCGAAGCCGTCGGT CAAGCTGGCCAATGTGCCCGATGACTTGCCGGCACGCAAGAGCTGGCACG TTGAGCGTTGCCATGTGATGGAAACAGTACTGGAGGCGCTCACCAGCGAT GGGCGGCCGCGATTGGTGGGGCTTGTGGGCGACAGCGGATCGGGCAAAGC TACGGCTGCGTCCGATATCGTCAGAAGTCCCAACATCCGGCAGGTTTTAT CTATTTAGATCGTGTGGTTGACCGCTAACGATGGTGTAAAGCAACGCCTC CCGTCCTTGATGCTGCGGTTGGCGCCCATGTTGTACGGAGATATCGGGGG CAGCTTGGGGCGTCATCCAGCTCAAAACGGACTACGGTGCAGCCTACAAT TAGCAGCGGATGGAGGCAGGTCATGGGGGCAACGTGCTGAAGTGTCTTGT GGTTACGGATAACGTGTGGGAGAAGGTAGTGTTGAAGCTACTGGGGACTG GAATGTGCGCTCTCCTGTCGACCCGCGACCAAGCGCTGGCAACGGACTTT GAGGGTTGTCGGTTGATGAGCTGTCTAAAGCAGATGCACAATCCGTGCTG AGGAAAGCAGCGGAGCTGACACCTGAGGTAGGCCTGCTCGAAGACGCCGT GAACCTGATTGAGCTGTGTGGCCGCGTGGCGATGGACTAAGCTTTTTTTG TGGGACGTTGGAGCGCGGTTCGCAGCAGAAAGGATAGGAAGTCATGGTCG GGTGCGATCCTGAGAGAGAGACTGTTCGTGCGTGGAAGTGGATTGGTCGG ATTACCGATGCTGGCGGTTTCGTATACCGCAGATTGGAACATCTGGAGGG ATGTATGTGAGAGACCTTTGGAAAAGAGTTGCGGAGCCCCGTTCTAGACA CGTGTTGGGGCACTTCTCTTTCTCTTCTCTTTCCCTTCCTCTCCTCTCCT CCTCTCCACCATGCGAGCTACTACACTCAATTGACAGGACTCATTGGTCT TCCAAGGCAAATACCAAGGGCATACGAACACTTTAAAGTGTATCCTCCCG GGAGGAGCCCGTCTTGGTGGCCATGCCGCAGGATGGCGGCAGCAGTAGCT GGAGTTTGTTTGGCGGATGATAGGGTGGTACCCGACGGCCAGCGCGCATG TTTAGGACAGGAGTTCGACCAGAGATGGGAGCTAAGGATGCAGGAGATGA TGGGCATGCTGCCGTCGCTGCTGCAGGCCGAGCCGGATGGGCGAGGCCAA GAGGAGTCGGGCCGCGCTAGGAGAGGCGCTGCAGGTGCGGCGGAGTTAGG GTGTTCTGCCGAGCAGCCACTGAGAGCTGCATCCTGCGGTGCGCGTCGTT GAGGGCGACACTGCTGGAGGAGAGAGCAGCAGTAGGCCGGGCGTGGAAGG CGTCCTGGCGCGGGCAGTGGGGGTCCCTGCTGAAGGTGGGTTTGGTGGAT TCCAGACCACCGACTCTCTTGCGTACGTTTGGCAGTGATTGCACACAGCA GTTACTGTCGCTGGGGGCGCTGGTGAAAGTGTCACAGCAACCGGCTAATC CATTCAGGAGAGGTCGGGCGAAGACAGGCACGGCGGAAGGGCCGTGTCCA CTGTTCTGCCTTGCTGTTGAAGCGGGGGGGAAGGAAAATAAAATCGCTGC AGGAGTCGGCGCAACAGAACGGACGTAGGGGCCGTGATCTCCCAGCTCCG CTGGT
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Coding sequence (CDS) from alignment at C-linearis_contig103:528551..531755+

>mRNA_C-linearis_contig103.857.1 ID=mRNA_C-linearis_contig103.857.1|Name=mRNA_C-linearis_contig103.857.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at C-linearis_contig103:528551..531755+ (Chordaria linearis ClinC8C monoicous)
ATGTGTCGAGGCGATATGGAAGTTTGTCGAGGGCTGCAGCAAACGGGGCA
AGATGTGTCGAGGCGATATGGAAGTTTGTCGAGGGCTGCAGCAAACGGGG
CAAGAGAGCACAGACAGGAAACAAGACCAACCGTTGAGCAATGATCCGAA
GCCGTCGGTCAAGCTGGCCAATGTGCCCGATGACTTGCCGGCACGCAAGA
GCTGGCACGTTGAGCGTTGCCATGTGATGGAAACAGTACTGGAGGCGCTC
ACCAGCGATGGGCGGCCGCGATTGGTGGGGCTTGTGGGCGACAGCGGATC
GGGCAAAGCTACGGCTGCGTCCGATATCGTCAGAAGTCCCAACATCCGGC
AGGTTTTATCTATTTAGAGAGCACAGACAGGAAACAAGACCAACCGTTGA
GCAATGATCCGAAGCCGTCGGTCAAGCTGGCCAATGTGCCCGATGACTTG
CCGGCACGCAAGAGCTGGCACGTTGAGCGTTGCCATGTGATGGAAACAGT
ACTGGAGGCGCTCACCAGCGATGGGCGGCCGCGATTGGTGGGGCTTGTGG
GCGACAGCGGATCGGGCAAAGCTACGGCTGCGTCCGATATCGTCAGAAGT
CCCAACATCCGGCAGGTTTTATCTATTTAG
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