mRNA_C-linearis_contig103.856.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig103.856.1
Unique NamemRNA_C-linearis_contig103.856.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: D7FMG5_ECTSI (Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG5_ECTSI)

HSP 1 Score: 907 bits (2343), Expect = 2.130e-309
Identity = 565/957 (59.04%), Postives = 672/957 (70.22%), Query Frame = 2
Query:  515 WPRGAAVLQDAE-AAAAAGDTEGDADTIKAVETVLGKHPLPVDEALAALRPSGGGDGSTTSFFRTMSAPGDGCHVARAWAEVFSAALPPAKMTEACTAGFVTCC-APDPRR-FLCGISVFFAYGAEIAPRELIGLATVLTVEELKGAFLGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEILERLPQSIADFPGGVKACEDVFEPEIAGIVRGHGFRGPLRLALQERQFSATLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTS-TTSATTHTPEAETKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSL-------SERGGRKGRDFLYSDGFVADSKFGKLMQGLGWTVYNTRTYRSVDSSKPTDRDWERIFNGTVLLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVLENDNGELSNTEIVLTFYVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGGLFVRVVDSDVHLGRGLLALSAPLMFSRVLFFGQILRRQGLVIQMMAILFGEMLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFEDLYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVEQQQDRAFREDKVRIMKLYGRMVEGDQLPTPFNLLQLALWLPFSVIDRLFGVDTSAKIVHEFGVGIAWLMLGPPVLLAAWGLWVASVPTAVLRVWRRANFTGKSLTFAVICSSVVVALHTLVLPFVALLFWAMSGLGLLVTVFRELGASLCGNDATARGGDAAGESGDQHRCARR-GAADAKAASTDGEGTGAAVCPASVAQILKHADDTPATSGRRRSLGRGGGGGHGDQSGLSVAEIVAHLDDLET----SERREQQEQTATWEQVARMRNHLDAAGKDRSEAVLARLAIVDASLKASIVELVERSVA 3337
            WPRG  +L  A  AAAAA + EG  ++ +AV  VLG +PLP ++ + ALRP+ GGD +TT FFR ++  G+  H + AWAEVFS +L P  M+EACT GF  C    +P    L  +SVFFAYGA + P++LI LA +L +EE+K  FLGGL+ VDNPFIPG+SLSVALEE+ KN+ ERE   L ALQ+++DDL+  +L+RLPQ+IA FPGGV  CE V EPE+AG++R   FRGPLRLALQERQFS TLC+APLM  YM YRFVAGLPDLQDSN+LLG  +  +  TS  TS     P A   + XXXXXXXXXXXXXXXXXXXXXXXXXXX              R GRKGRDFLYSDGFVA S   +L+QGLGWT        +    +P+D  WE IF+GT L G QF+ +G+LTKP AYYKVP +RM L  YVHL+ LALYT V LE+D+GELSNTEI LTF+VMAEIVSNL+QM   F E+ R+KWNWLE LSL LLAGGL +R+ +SDVH GR L ALSAPL+FSRVLFFGQ L+RQGLVIQMM ILFGEMLQF LVLGTIMMGFTVSF+ALF E +S+G+ WLDVFKAMLGEV VF ++YEDSVYR+VA+VLLVVYL VVAVMLLNLLIAVLSTEHAKV++QQD AFRE KVRIMKLY R+V+ D LP+PFNL Q+A+ L    +D L G  T  KI+ EF VG+ WL LG P +L AWGLW AS P AVL  WRRA +TG+SLT AV CSSVVV LH   LPFV   FW  SGLGL     + L A+LCG +         GE G   R  RR  AA +  AST   G+ +A     VA +L+  + +P             GG H   +G SVAEI A L++       ++ + +Q QT T E++ R RNHLD AG+ R EAVLA L  VDA LK  I EL ERSVA
Sbjct:   69 WPRGRHILGGAAPAAAAAAEGEG-LESFRAVAAVLGNYPLPRNDGMEALRPTDGGDITTTRFFRDIAHRGNR-HSSWAWAEVFSKSLLPRDMSEACTQGFKACPQGSNPAHDLLPAMSVFFAYGAVVDPKDLIALAEILKLEEMKDCFLGGLSFVDNPFIPGLSLSVALEESLKNAPERESRCLEALQKAMDDLLRAVLDRLPQTIASFPGGVGGCESVLEPEVAGVLRDRDFRGPLRLALQERQFSKTLCIAPLMFKYMCYRFVAGLPDLQDSNDLLGGREEKRTRTSFETSGPVRAPVASAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSGTRRGRKGRDFLYSDGFVAGSATERLLQGLGWTGRRAAAALTPPPERPSD--WETIFSGTFLPGAQFVLVGILTKPLAYYKVPVMRMLLGFYVHLITLALYTAVALESDDGELSNTEIALTFHVMAEIVSNLLQMRAGFVEFWRDKWNWLESLSLLLLAGGLTIRIRNSDVHQGRALFALSAPLVFSRVLFFGQFLKRQGLVIQMMTILFGEMLQFALVLGTIMMGFTVSFYALFEEAKSYGDVWLDVFKAMLGEVSVFSEIYEDSVYRDVARVLLVVYLTVVAVMLLNLLIAVLSTEHAKVDEQQDIAFRESKVRIMKLYVRIVDSDVLPSPFNLPQIAVGLVARGVDGLLGTKTCPKIMREFSVGVFWLTLGSPAILIAWGLWAASAPMAVLTAWRRATYTGRSLTVAVACSSVVVVLHVFALPFVLSWFWVRSGLGLAALTLKTLAAALCGGNG--------GEDGSGRRVPRRPSAAGSGGAST--AGSPSACSDVIVADMLRRGNASP-------------GGRHA--AGSSVAEIWAQLENPTMPDGLAQGQGEQNQTVTLEEIIRARNHLDEAGRGRGEAVLALLKSVDADLKDQIAEL-ERSVA 995          
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: A0A6H5JX68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX68_9PHAE)

HSP 1 Score: 522 bits (1345), Expect = 1.330e-166
Identity = 319/556 (57.37%), Postives = 383/556 (68.88%), Query Frame = 2
Query:  515 WPRGAAVL-QDAEAAAAAGDTEGDADTIKAVETVLGKHPLPVDEALAALRPSGGGDGSTTSFFRTMSAPGDGCHVARAWAEVFSAALPPAKMTEACTAGFVTCC--APDPRRFLCGISVFFAYGAEIAPRELIGLATVLTVEELKGAFLGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEILERLPQSIADFPGGVKACEDVFEPEIAGIVRGHGFRGPLRLALQERQFSATLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTSTTSATTHTPEAETKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSLSERGGRKGRDFLYSDGFVADSKFGKLMQGLGWTVYNTRTYRSVDSSK----PTD-----------RDWERIFNGTVLLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVLENDNGELSNTEIVLTFYVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGGLFVRVVDSDVHLGRGLLALSAPLMFSRVLFFGQILRRQGLVIQ 2128
            WPRG  +L   A A AAA   EG  +  +AV  VL  HPLP+D+   ALR + GGD +TT FFR ++  G+  H + AWAEVFS +L P  M+EACT GF  C   +      L  +S+FFAYGA + P+ L  L+ +L +EE+K  FLGGL+ VDNPFIPG+SLSVALEE+ KN+ ERER  L ALQ+++D L+L +L+RLPQ+IA FPGGV  CE V EPE+AG+VR   FRGPLRLALQERQFS TLC+APLM +YM YRFVAGLPDLQDS +LLGR +  +  TS  S+        + A         XXXXXXXXXXXXXXXXXXX    L  R GRKGR FLYSDGFVA S   +L+QGLGWT        +    +    P D            DWE +F+GT L G QF+ +G+LTKP AYYKVP +RM L  YVHL+ LALYTTV LE+D+ ELSNTEI LTF+VMAEIVSNL+QM   F E+ R+KWNWLE LSL LLAGGL +R+ + DVH GR L ALSAPL+FSRVLFFGQ L+RQGLVIQ
Sbjct:   72 WPRGRHILGYAAPAPAAAAKGEG-LERFRAVAAVLDNHPLPMDDGKEALRQAEGGDITTTRFFRDIAHRGNR-HSSWAWAEVFSKSLLPRDMSEACTQGFKACLQGSTPAHDLLPAMSLFFAYGAVVDPKNLTALSEILKLEEMKDCFLGGLSFVDNPFIPGLSLSVALEESFKNAPERERRFLEALQKAMDALLLAVLDRLPQTIASFPGGVGGCESVLEPEVAGVVRDRDFRGPLRLALQERQFSKTLCIAPLMFEYMCYRFVAGLPDLQDSTDLLGRREERRTRTSLQSSGPVRAPVASAASVSSVCTDGXXXXXXXXXXXXXXXXXXXXXPPLGTRRGRKGRGFLYSDGFVAGSATERLLQGLGWTGRRAAEALTPPPERRGGLPIDVTLCRSDVLVPSDWETVFSGTFLPGAQFVLVGILTKPLAYYKVPVMRMLLGFYVHLITLALYTTVALESDDAELSNTEIALTFHVMAEIVSNLLQMRAGFVEFWRDKWNWLESLSLLLLAGGLTIRIDNRDVHQGRALFALSAPLVFSRVLFFGQFLKRQGLVIQ 625          
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 358 bits (919), Expect = 1.700e-99
Identity = 247/668 (36.98%), Postives = 353/668 (52.84%), Query Frame = 2
Query:  854 ISVFFAYGAEIAPRELIGLATVLTVEELKGAFLGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEILERLPQSIADFPGGVKACEDVFEPEIAGIVRGHGFRGPLRLALQERQFSATLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTSTTSATTHTPEAETKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSLSERGGRKGRDFLYSDGFVADSKFGK--LMQGLGWTVYNTRTYRSVDSSKPTDRDWERIFNGTVLLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVLENDNGELSNTEIVLTFYVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGGLFVRVVDSDVHLGRGLLALSAPLMFSRVLFFGQILRRQGLVIQMMAILFGEMLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFEDLYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVEQQQDRAFREDKVRIMKLYGRMVEGDQLPTPFNLLQLALWLPFSVIDRLFGVDTSAKIVHEFGVGIAWLMLGPPVLLAAWGLWVASVPTAVLRVWRRANFTGKSLTFAVICSSVVVALHTLVLPFVALLFWAMSGLGLLVTVF 2851
            +S    Y       +LI L+   + E L+  FL  +AC DNPF+PG++LS+A  ++   + E ER  L +LQE VD L+LEILERLPQ++  F GG+  C  VFEPE++      G  GPLRLALQERQ   T C  PL+ D++S RF  GLP L+D+ N+LG  +    +            A                                ++  L ++ G++G+  L     + D+      L+QG                       W    + T L G QF   G++  P  YY+VPA+RM L L V+L ML  ++TVVL +++G L+  E    FY++A I++   +M  +F  Y  + WN L+ L L L+ GGL VR  D D   GR L ALSAPL+FSR+LFF Q+LR  G +IQ++  +  E+++FG+V+  +M+GF +SF ALF +  +FG   L +FKAMLGEV  F   +  + Y +VA  L V+YL+V+AVMLLNLLIAVLST H+KVE + D+ F+  K RI++ Y  +V+   LP PFNL+QL L LP  V DR      S +     G    WL LGP        LWV S   A   VW   +F  K+           +++ +L++ ++ + FW + G  L +  F
Sbjct:  534 LSCLLQYPTMFDTADLIQLSRERSAEWLRTCFLETVACSDNPFVPGMTLSIAFAKSASVAPEGERRKLLSLQERVDTLLLEILERLPQTVQGFDGGMTGCSAVFEPELSRE-DARGLPGPLRLALQERQHVQTFCTQPLLTDFLSRRFTYGLPGLRDTQNILGDRRELTNL------------ARGGPGELMSGQKYLALDEEGRRKEDGRSLDRCLLLDLQDKIGQEGK--LLDSRKIIDTLLSPCILLQGANCAGL-----------------WNTAVSLTFLPGAQFTIAGLVGMPDQYYRVPAMRMLLDLAVYLGMLVFFSTVVLFHEDGPLTPGEAAFAFYILAGIITEGQEMRRDFGLYAADHWNILDLLGLGLVTGGLIVRCADGDNSWGRALYALSAPLIFSRLLFFAQMLRFHGPMIQVVFSMTAELVKFGVVIIVVMLGFAMSFHALFGDVDTFGGTCLTLFKAMLGEVDFFGS-FPGNQYDSVATALFVIYLVVIAVMLLNLLIAVLSTSHSKVEGKADQEFKVSKARIIEHYRMVVDMCLLPPPFNLVQLILSLPVMVRDRSGQGTASTRAQEAVGRMAFWLALGPVAAACGTVLWVLSSLFAPF-VWHT-HFYSKAQA-----RRGALSVGSLLVRYLIVFFWCVLGAPLYLMAF 1161          
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: A0A6H5JXT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXT0_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 1.860e-92
Identity = 206/407 (50.61%), Postives = 247/407 (60.69%), Query Frame = 2
Query: 2129 MMAILFGEMLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFEDLYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVEQQQDRAFREDKVRIMKLYGRMVEGDQLPTPFNLLQLALWLPFSVIDRLFGVDTSAKIVHEFGVGIAWLMLGPPVLLAAWGLWVASVPTAVLRVWRRANFTGKSLTFAVICSSVVVALHTLVLPFVALLFWAMSGLGLLVTVFRELGASLCGNDATARGGDAAGESGDQHRCARRGAADAKAASTDGEGTGAAVCPASVAQILKHADDTPATSGRRRSLGRGGGGGHGDQSGLSVAEIVAHLDDLET----SERREQQEQTATWEQVARMRNHLDAAGKDRSEAVLARLAIVDASLKASIVELVERSVA 3337
            MM ILFGEMLQF LVLGTIMMGFTVSFFALF+ED+S+GE WLDVFKAMLGEV VF + YEDSV+R VA+ LLV+YL VV +MLLNLLIA                     VRIMKLY R+V+ D LP+PFNL Q+A+ L    +D L G  T  KI+ EF VG+ WL LG P +L AWGLW ASVP AVL  WRRA FTG+SL+ AV  SSVVV LH   LPFV + FW  SGLGL     + L  +LCG +         GE G   R +RR        S  G G G      SV   +  AD       RR +   GG       +G SVAEI A L++  T    ++R+++Q+QT T E++    +HLD AG+ R E VLA L  V+A LK  I EL E+SVA
Sbjct:    1 MMTILFGEMLQFALVLGTIMMGFTVSFFALFQEDKSYGETWLDVFKAMLGEVSVFAENYEDSVHRYVARFLLVLYLTVVTIMLLNLLIA---------------------VRIMKLYVRIVDSDVLPSPFNLPQIAVGLVAKGVDGLLGTRTCPKIMREFSVGVFWLTLGAPAILIAWGLWAASVPAAVLTAWRRATFTGRSLSVAVAYSSVVVILHLFALPFVLVWFWVRSGLGLAALTLKTLATALCGGNG--------GEDGSGTRVSRR-------PSAAGSGGGPTAGSPSVCSDVVVADML-----RRGNASTGGR----HAAGSSVAEIWAQLENPTTPDGLAQRQDEQDQTVTVEEIIHALDHLDEAGRGRGEVVLALLKSVNADLKDQIAEL-EQSVA 361          
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE)

HSP 1 Score: 335 bits (858), Expect = 1.960e-90
Identity = 234/741 (31.58%), Postives = 370/741 (49.93%), Query Frame = 2
Query:  785 MTEACTAGFVTCC----APDPRRFLCGISVFFAYGAEIAPRELIGLATVLTVEELKGAFLGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEILERLPQSIADFPGGVKACEDVFEPEIAGIVRGHGFRGPLRLALQERQFSATLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTSTTSATTHTPEAETKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSLSERGGRKGRDFLYSDGFVADSK---FGKLMQ-GLGWTVYNTRTYRSVDSSKPTDRDWERIFNGTVLLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVLENDNGELSN-TEIVLTFYVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGGLFVRVVDS-DVHLGRGLLALSAPLMFSRVLFFGQILRRQGLVIQMMAILFGEMLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFEDLYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVEQQQDRAFREDKVRIMKLYGRMVEGDQLPTPFNLLQLALWLPFSVIDRLF----------------------------GVDTSAKIVHE----------FGVGIAWLMLGPPVLLAAWGLWVASVPTAVLRVWRRANFTGKSLTFAVICSSVVVALHTLVLPFVALLFWAMSGLGLLVTVFRELG 2863
            MT A ++   TCC     P     L  ++     GA+   + L+ L+ ++    LK + LG ++  +NPFIPG++LSVA   AT+ + E E+  L ++Q +VD+L+LE+LE +PQ++  F G ++ C  +FEPE   I R HG++GPL + L +R+   T C  PL+ D+M+ +F  GLP L+D+  +L                                                          LS +G  +    LY  G +A+ K   FG  +Q G      ++ TY                       G +FI  G L++P +YYKVPA+RM L L  ++ M+ ++   V+ ++ G+ S+  EIV T Y+   I++   ++ ++ +EY+R++WN L+  SL LL GG   R+    D    R L ALSAPL F+R+LFF QIL  QG +IQ+M  + G + +FG+++  +M+GF  SF++L++E  ++GE W  +F+A LGE    +D +  + +  VA VLLVVYL+++ +M+LNLL+AVLST HAKV+      ++  + R+++ Y  +VE D+LP PFNL Q    LPF V+D  F                             ++ + K   +          FG    W MLGP  +LA W LW+ S+  A + VW+ +    KSL   +    +V+ +  +  PF  L+ W   G+  +    R LG
Sbjct:  872 MTVALSSSLSTCCNNLSLPVEDARLSVLAYLLQQGAKPTNKGLLRLSNLVKFPRLKESLLGAISSANNPFIPGMNLSVACTTATRRAMEGEKRRLASMQAAVDELLLEVLEHMPQTVKGFKGEMRDCSAIFEPETV-ISRFHGYQGPLHVVLSKREQMETYCTIPLVLDFMTRKFTKGLPSLRDTEGVL----------------------------------------------------------LSNKGFTQT---LYGGGLLAEGKVFFFGMALQRGYAGGALSSITY---------------------FPGARFIIAGFLSRPGSYYKVPALRMCLDLVTYISMMIIFGGFVILHEAGDTSDWLEIVFTMYIFGGILTEFREILEDPWEYMRDQWNLLDVTSLTLLLGGAIQRMYGQVDDESSRALYALSAPLAFARILFFAQILPSQGPMIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTAYGEVWKAIFRATLGETDYLDD-FSGTTFDGVATVLLVVYLVLLTIMMLNLLVAVLSTAHAKVDANAGLEYKVTRARLIQHYVNVVEIDRLPPPFNLFQWIFALPFMVLDLCFRTSRRPSTASTNSAXXXXXXXXXXXXXXSINGNEKTKRDRSYFKVARGFFGRLAFWAMLGPIAVLAGWVLWMISIVKAPVVVWQTSG--DKSLGGRIARMLLVIFVCAVGAPFWHLVMWVRGGVAGVRRTMRALG 1526          
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI)

HSP 1 Score: 290 bits (741), Expect = 2.360e-76
Identity = 190/557 (34.11%), Postives = 299/557 (53.68%), Query Frame = 2
Query:  782 KMTEACTAGFVTCC----APDPRRFLCGISVFFAYGAEIAPRELIGLATVLTVEELKGAFLGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEILERLPQSIADFPGGVKACEDVFEPEIAGIVRGHGFRGPLRLALQERQFSATLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTSTTSATTHTPEAETKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSLSERGGRKGRDFLYSDGFVADSK---FGKLMQGLGWTVYNTRTYRSVDSSKPTDRDWERIFNGTVLLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVLENDNGELSN-TEIVLTFYVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGGLFVRVVDS-DVHLGRGLLALSAPLMFSRVLFFGQILRRQGLVIQMMAILFGEMLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFEDLYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVE 2425
            +MT+A ++   T C     P     L  ++    +GA+   + L+ L  ++    LK + LG ++  DNPFIPG++LSVA   AT+ + E E+  L ++Q ++D+L+LE+LE +PQ++  F G ++ C  +FEPE   I R HG++GPL + L +RQ   T C  PL+ D+MS +F  GLP L+D+  +L                                                        TS +E G       LY DG +A+ +   FG  +Q      Y   T  S+                T   G +FI  G+L++P +YYKVPA+RM L L  +++M+ ++   V+ +D G+  +  EIV T Y+   I++   ++ D+ +EY+R++WN L+  SL LL GG+  R+    D    R L ALSAPL F+R+LFF QIL  QG +IQ+M  + G + +FG+++  +M+GF  SF++L++E  ++G  W  +F+A LGE   F+D +  + +  VA  LLVVYL+++ +M+LNLL+AVLST HAKV+
Sbjct:  623 QMTDALSSSLSTGCNNLSLPVEDARLSVLAYLLQHGAKPTNKGLLRLCNLVKFPRLKESLLGAISSADNPFIPGMNLSVACTMATRRAMEGEKRRLASMQAAIDELLLEVLEHMPQTVKGFKGEMRDCSAIFEPETV-ISRFHGYQGPLHVVLSKRQQMETYCTIPLVLDFMSRKFTKGLPSLRDTEGVLLNN-----------------------------------------------------TSFTEPG-----QTLYGDGLLAEGRVFFFGMALQ----RSYAGGTLSSI----------------TYFPGARFIIAGLLSRPGSYYKVPALRMCLDLVTYILMMIIFGGFVILHDAGDTFDWMEIVFTMYIFGGILTEFREILDDPWEYMRDQWNLLDVASLTLLLGGVIQRMYGQVDDQSSRALYALSAPLAFARILFFVQILPSQGPIIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTTYGVVWKAIFRATLGETDYFDD-FSGTTFDGVATALLVVYLVLLTIMMLNLLVAVLSTAHAKVD 1099          
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 4.130e-66
Identity = 218/696 (31.32%), Postives = 316/696 (45.40%), Query Frame = 2
Query:  854 ISVFFAYGAEIAPRELIGLATV-LTVEELKGAFLGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEILERLPQSIADFPGGVKACEDVFEPEIAGIVRGHGFRGPLRLALQERQFSATLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTSTTSATTHTPEAETKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSLSERGGRKGR-----------DFLYSDGFVADSKFGKLMQGLG------------W---TVYNTRT----YRSVDSSKPTDRDWERIFNGTVLLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVLENDNGELS----NTEIVLTF-------------YVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGGLFVRVVDSDVHLGRGLLALSAPLMFSRVLFFGQILRRQGLVIQMMA--------ILFGE---MLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFEDLYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVEQQQDRAFREDKVRIMKLYGRMVEGDQLPTPFNLLQLALWLPFS-----VIDRLFGVDTSAKIVHE------------FGVGIAWLMLGPPVLLAAWGLWVASVPTAVLRVWRR 2713
            +S   A  A  +P  L  LA      E  K   L  +    NPFIPG+ LS+ L EA + + E ER  +T +QESV+ L+LE+LERLP+S+  F   +  C D+FEP+   +     F  PL + L  +Q     C  PL+ D++  +F   LP L+D   +L                                                       +  LS RGG KG            D    DG + D +                     W   T++ +++    +RS  +      D  R  + T   G Q I  G+  +P  Y++VPA+RM L L V++ M+   +T VL +   E S    +T+  + F             +++  +     +M  NF  Y  ++WN L+ LSL  L  GL  RVVD    LG    AL+APL+ SR LFF QI   QG +IQ           ++F     +L+FG V+  I++GFT++F  LFR+  SFGE +LD+FKAMLG+   F+ ++    Y  VA  LLVVYL +V VMLLNLL+A+LST HA+V +  +R F+    R+M  Y  +V  D LPTPFNLLQL +W P +        R  GV  + +                 G  + W++LGP  ++    LW+ SV  A+   WR+
Sbjct:  451 LSSLMACSARPSPSHLKKLAIAHARGEAFKDCCLDAVTSAANPFIPGLVLSIRLAEAAEKANEGERRAITDIQESVNALLLEVLERLPRSVRSFERDMDDCRDMFEPKFLDVFED--FEKPLEMMLSRQQQRELFCNVPLVMDFLKRKFTLSLPRLRDPKEVLADSNE--------------------------------------------------ILHLS-RGGVKGDVCLVLDWGVDVDVQKEDGHLNDEQIDXXXXXXXXQADDHASLRPPWKHPTLFGSKSLLASFRSPRALLQGAND--RFPSLTPFPGAQVIVAGLAARPNDYFRVPAMRMVLDLVVYIGMIVALSTFVLFHSQAEKSYVEGSTDEQVVFRTLDWPEATCAKIFIVGGVFQEGREMARNFGRYCEDQWNALDLLSLLFLTIGLVGRVVDWKSQLGPAFYALAAPLLVSRALFFVQIHPLQGPMIQASGETKRFPQRVVFRMTRILLKFGFVMAVIVLGFTMAFHVLFRDFDSFGESFLDLFKAMLGDTDFFK-VFSGDTYDVVATFLLVVYLFIVTVMLLNLLVAILSTSHAQVAENIEREFKVSIARMMDHYQLVVTNDMLPTPFNLLQLIVW-PIAWCLHGCCGRNSGVSGNTQQTRNRSKEAYACGSKAIGPVVFWVVLGPVAVIGGSLLWMGSVLPAMY-FWRK 1088          
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 6.830e-66
Identity = 201/644 (31.21%), Postives = 298/644 (46.27%), Query Frame = 2
Query:  929 EELKGAFLGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEILERLPQSIADFPGGVKACEDVFEPEIAGIVRGHGFRGPLRLALQERQFSATLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTSTTSATTHTPEAETKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSLSERGGRKGRDFLYSDGFVADSKFGKLMQG-LGWTVYNTRTYRSVDSSKPTDRDWERIFNG--------TVLLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVLENDNGELSNT------EIVL-----------TFYVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGGLFVRVVDSDVHLGRGLLALSAPLMFSRVLFFGQILRRQG--LVIQMMAILFGEMLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFEDLYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVEQQQDRAFREDKVRIMKLYGRMVEGDQLPTPFNLLQLALWLPFSVIDRLFGVDTSA-----------KIVHEFG---VG--IAWLMLGPPVLLAAWGLWVASVPTAVLRVWRRANFTG 2728
            E+ +   L  +A   NPFIPG+ LS+ L EA + + E E+  +T +   V+DL+LEILE LP+S+  F   + A  D+FEP     +    F  P+ + L  RQ +   C APL+ D++  +F  GLP ++D   +L   K             H    + +                              +T +     R+   F+       D K  +   G L    +   T    +    + R    +  G        T     QFI  G+  +   Y++VP +RM L L V+L +L   +T VL     E S        EIV            T  +   +     +M  N+  Y+ ++WN L+ L L     G   RVVD    LG    ALSAPL+ SR LFF QI   QG  ++ +M  +L    L+FG V+  +M+GFT++F  LFR+  SFGE +L++FKAM GE   F     D+ Y  VA +LLVVYL +V ++LLNLL+A+LST H+KV++  DR F+    R+M  Y  +V  D LP PFNLLQL +W     +    G  TS            +  +E G   +G  + W++LGP  ++    LW+ S P +V  +WR+ +  G
Sbjct:  295 EKFRDCCLDAVASASNPFIPGLVLSIRLAEAAEKTNEGEQRAITDVHARVNDLLLEILEGLPRSVRSFERDMDASGDMFEP---ASLPSKDFETPMEMILSRRQQTEIFCSAPLVMDFIKRKFTLGLPSMRDKKEILADSKEIF----------HLSGGDVRGNVCLVLGTFVP------------------ITVVDADVRREDGPFIDLKAEDMDKKAARADHGQLSAQAWAHPTLLGSNCLLASFRSPRALLQGANDRLPCLTPFPAAQFIVAGLAARSNDYFRVPVMRMVLDLVVYLGVLVALSTFVLFRSQAEQSRVDGSADEEIVFRKLNWSEATCATAVIAGGMYREWFEMARNYGRYLEDQWNALDLLGLLFFTIGFIARVVDWTQQLGPAFYALSAPLLVSRALFFVQIHPLQGPMVIFRMTTVL----LKFGFVMAVVMIGFTMAFHVLFRDFDSFGESFLELFKAMFGETTFFNAFSGDT-YDAVATMLLVVYLSIVTILLLNLLVAILSTSHSKVQKNIDREFKASIARMMDHYQLVVTNDILPAPFNLLQLVVWPIAWCVGGCCGRSTSGSQSTRQELNRGREAYERGNKAIGPVVFWVVLGPVAVVGGTLLWIVSTPLSVY-LWRKHHREG 901          
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 3.390e-64
Identity = 189/573 (32.98%), Postives = 277/573 (48.34%), Query Frame = 2
Query:  938 KGAFLGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEILERLPQSIADFP--GGVKACEDVFEPEIAGIVRG-HGFRGPLRLALQERQFSATLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTSTTSATTHTPEAETKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSLSERGGRKGRDFLYSDGFVADSKFGKLMQGLGWTVYNTRTYRSVDSSKPTDRDWERIFNGTVLLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVL-----ENDNG---------ELSNTEIVLTFYVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGGLFVRVVDSDVHLGRGLLALSAPLMFSRVLFFGQILRRQGLVIQMMAILFGEMLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFEDLYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVEQQQDRAFREDKVRIMKLYGRMVEGDQLPTPFNLLQLALWLPFSVIDRLFGVDTSAKIVHE 2605
            K   L  +    NPF+PGV+LS+ L EA K + E ER  L   + S+D+L+LE+ ERLPQ++  F    G+ +C +V EPE+     G +   GPL + + +     T C  PL+ D++S +F  GLPDL D+  LL                                                       +  L E G  +      SDG +  +    L++G+   +                  W+     T L G QFI   ++  P  YY+VPA+RM L   V++ M+A+ ++ VL     E+D+G          LS     L F + A       +M      Y +++WN L+ L +  L  GL +R  D     G    ALSAPL+ +RVLFF QIL+  G ++Q++  +   +LQFG V+  +M+GFT++    FR+   FG+  L +FKAMLGE G+F++ +    Y  VA +L+VVYL +V VMLLNLLIA+LSTEHA+V +    AF+  K RI+  Y  +V+ D LP PFNL+QL L L   V+   +     AK  H 
Sbjct:  540 KRCCLRAVTSAANPFVPGVTLSIRLSEAAKQASEGERRALFDTKSSIDELLLEMFERLPQTVRGFEEQAGMDSCTNVLEPELMRATTGSNDLGGPLDMIISDPLQLETFCKVPLIMDFLSSKFTLGLPDLMDTAGLLKNEHH--------------------------------------------------LWYLEEDGLFRDEHGFGSDG-IPVALLAALLKGVRQGI------------------WDNTPILTFLPGTQFIVAAMVAAPTKYYEVPAMRMLLDFVVYVGMVAVLSSFVLFHSTTESDSGLDGIVAHRLSLSEGACALIF-ITAGAYREGREMKRGIRAYFKDQWNVLDALGILFLFVGLVIRWDDWTSTWGPAFYALSAPLVVARVLFFAQILQFHGPMVQVIFRMTATLLQFGAVMLVVMIGFTMALHVFFRDVADFGDTLLGLFKAMLGETGIFDE-FSGGRYDPVATILVVVYLCIVTVMLLNLLIAILSTEHAQVMENTAEAFKVSKARIIAHYRTVVDNDVLPAPFNLVQLILSLGVIVLTLPYYFLLEAKREHS 1041          
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 2.670e-63
Identity = 207/651 (31.80%), Postives = 302/651 (46.39%), Query Frame = 2
Query:  869 AYGAEIAPRELIGLAT-VLTVEELKGAFLGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEILERLPQSIADFP--GGVKACEDVFEPEIAGIVRG-HGFRGPLRLALQERQFSATLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTSTTSATTHTPEAETKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSLSERGGRKGRDFLYSDGFVADSKFGKLMQGLGWTVYNTRTYRSVDSSKPTDRDWERIFNGTVLLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVL-----ENDNG---------ELSNTEIVLTFYVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGGLFVRVVDSDVHLGRGLLALSAPLMFSRVLFFGQILRRQGLVIQMMAILFGEMLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFEDLYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVEQQQDRAFREDKVRIMKLYGRMVEGDQLPTPFNLLQLALWL-------PFSVI------------------DRLF--GVDTSAKIVHE-----FGVGIAWLMLGPPVLLAAWGLW 2671
            A  A  +  EL GL+    + +  K   L  +    NPFIPGV+LS+ L EA K + E ER  L   + S+D+++LE+ ERLPQ++  F    G  +C +V EPE+     G +   GPL + + +     T C  PL+ D++S +F  GLPDL D+  LL    +                                                  +  L E G  +    L  DG +  +    L++G+   +                  W+     T L G QFI   ++  P  YY+VPA+RM L   V++ M+A  +  VL      +D G          LS     L F + A       +M      Y +++WN L+ L +  L  GL +R  D     G    ALSAPL+ +RVLFF QIL+ QG ++Q++  +   +LQFG V+  +M+GFT++   +FR+ + FG+  L +FKAMLGE G F++ +    Y  VA +L+VVYL +V VMLLNLLIA+LSTEHA+V++    AF+  K RI+  Y  +V+ D LP PFNL+QL L L       P+  +                   RLF   V   A+  H      FG  + WL+LGP  +     LW
Sbjct:  499 ANSARPSASELKGLSRKAASGDVFKRCCLRAVTSAANPFIPGVTLSIRLTEAAKQASEGERRALFETKSSIDEMLLEMFERLPQTVRGFEEQAGTDSCTNVLEPELMRAQSGSNDLGGPLDMIISDPLQLETFCKVPLIMDFLSSKFTLGLPDLMDTAGLLKNEHQ--------------------------------------------------LWYLEEDGLFRDEHGLGLDG-IPVALLEALLKGVRQGI------------------WDNTPTLTFLPGAQFIVAAMVAAPTKYYEVPAMRMLLDFVVYVGMVAALSYFVLFHSTTGSDPGLDGIADHRFSLSEGACALIF-ITAGAYREGREMKRGIRAYFKDQWNVLDALGMLFLFVGLVIRWDDWTSTWGPAFYALSAPLVVARVLFFAQILQFQGPMVQVIFRMTATLLQFGAVMLVVMIGFTMALHVIFRDVEDFGDTLLGLFKAMLGETGFFDE-FSGGRYDPVATILVVVYLFIVTVMLLNLLIAILSTEHAQVQENTGGAFKVSKARIIAHYRTVVDNDVLPAPFNLVQLLLSLGVIAMTFPYCFLLEAKREQSETERPAIDEHGRLFWGNVWEGARQRHRGARRAFGQLVWWLVLGPVAVAGGAILW 1078          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMG5_ECTSI2.130e-30959.04Transient receptor potential channel n=1 Tax=Ectoc... [more]
A0A6H5JX68_9PHAE1.330e-16657.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLB1_ECTSI1.700e-9936.98Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JXT0_9PHAE1.860e-9250.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LDE6_9PHAE1.960e-9031.58Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LT30_ECTSI2.360e-7634.11Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5KJG3_9PHAE4.130e-6631.32Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JG42_9PHAE6.830e-6631.21Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KBU4_9PHAE3.390e-6432.98Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FZR6_ECTSI2.670e-6331.80Ankyrin Repeat Transient Receptor Potential Channe... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:511092..520110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score908.7
Seed ortholog evalue2.5e-261
Seed eggNOG ortholog2880.D7FMG5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium ion transmembrane transport
EggNOG OGsKOG3676@1,KOG3676@2759
Ec32 ortholog descriptiontransient receptor potential channel
Ec32 orthologEc-05_000810.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons15
Model size4127
Cds size3129
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927380.0545416-UTR-C-linearis_contig103:511091..5113551622927380.0545416-UTR-C-linearis_contig103:511091..511355Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 511092..511355 +
1690879665.9774497-UTR-C-linearis_contig103:511091..5113551690879665.9774497-UTR-C-linearis_contig103:511091..511355Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 511092..511355 +
1622927380.0657194-UTR-C-linearis_contig103:511821..5119061622927380.0657194-UTR-C-linearis_contig103:511821..511906Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 511822..511906 +
1690879665.9908144-UTR-C-linearis_contig103:511821..5119061690879665.9908144-UTR-C-linearis_contig103:511821..511906Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 511822..511906 +
1622927380.2264173-UTR-C-linearis_contig103:519461..5201101622927380.2264173-UTR-C-linearis_contig103:519461..520110Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 519462..520110 +
1690879666.1320589-UTR-C-linearis_contig103:519461..5201101690879666.1320589-UTR-C-linearis_contig103:519461..520110Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 519462..520110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927380.0746536-CDS-C-linearis_contig103:511906..5120411622927380.0746536-CDS-C-linearis_contig103:511906..512041Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 511907..512041 +
1690879666.0005846-CDS-C-linearis_contig103:511906..5120411690879666.0005846-CDS-C-linearis_contig103:511906..512041Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 511907..512041 +
1622927380.0852473-CDS-C-linearis_contig103:512255..5124141622927380.0852473-CDS-C-linearis_contig103:512255..512414Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 512256..512414 +
1690879666.0085323-CDS-C-linearis_contig103:512255..5124141690879666.0085323-CDS-C-linearis_contig103:512255..512414Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 512256..512414 +
1622927380.0958464-CDS-C-linearis_contig103:512830..5129711622927380.0958464-CDS-C-linearis_contig103:512830..512971Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 512831..512971 +
1690879666.0167499-CDS-C-linearis_contig103:512830..5129711690879666.0167499-CDS-C-linearis_contig103:512830..512971Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 512831..512971 +
1622927380.1057346-CDS-C-linearis_contig103:513292..5135041622927380.1057346-CDS-C-linearis_contig103:513292..513504Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 513293..513504 +
1690879666.026986-CDS-C-linearis_contig103:513292..5135041690879666.026986-CDS-C-linearis_contig103:513292..513504Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 513293..513504 +
1622927380.1171515-CDS-C-linearis_contig103:513886..5139861622927380.1171515-CDS-C-linearis_contig103:513886..513986Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 513887..513986 +
1690879666.0349002-CDS-C-linearis_contig103:513886..5139861690879666.0349002-CDS-C-linearis_contig103:513886..513986Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 513887..513986 +
1622927380.1285243-CDS-C-linearis_contig103:514223..5144201622927380.1285243-CDS-C-linearis_contig103:514223..514420Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 514224..514420 +
1690879666.0428622-CDS-C-linearis_contig103:514223..5144201690879666.0428622-CDS-C-linearis_contig103:514223..514420Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 514224..514420 +
1622927380.1394389-CDS-C-linearis_contig103:514543..5148661622927380.1394389-CDS-C-linearis_contig103:514543..514866Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 514544..514866 +
1690879666.0517993-CDS-C-linearis_contig103:514543..5148661690879666.0517993-CDS-C-linearis_contig103:514543..514866Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 514544..514866 +
1622927380.1501536-CDS-C-linearis_contig103:515362..5155051622927380.1501536-CDS-C-linearis_contig103:515362..515505Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 515363..515505 +
1690879666.0623565-CDS-C-linearis_contig103:515362..5155051690879666.0623565-CDS-C-linearis_contig103:515362..515505Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 515363..515505 +
1622927380.160538-CDS-C-linearis_contig103:515916..5160481622927380.160538-CDS-C-linearis_contig103:515916..516048Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 515917..516048 +
1690879666.0720685-CDS-C-linearis_contig103:515916..5160481690879666.0720685-CDS-C-linearis_contig103:515916..516048Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 515917..516048 +
1622927380.170587-CDS-C-linearis_contig103:516407..5166441622927380.170587-CDS-C-linearis_contig103:516407..516644Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 516408..516644 +
1690879666.0815077-CDS-C-linearis_contig103:516407..5166441690879666.0815077-CDS-C-linearis_contig103:516407..516644Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 516408..516644 +
1622927380.1827738-CDS-C-linearis_contig103:517097..5172141622927380.1827738-CDS-C-linearis_contig103:517097..517214Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 517098..517214 +
1690879666.0906055-CDS-C-linearis_contig103:517097..5172141690879666.0906055-CDS-C-linearis_contig103:517097..517214Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 517098..517214 +
1622927380.193796-CDS-C-linearis_contig103:517642..5178001622927380.193796-CDS-C-linearis_contig103:517642..517800Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 517643..517800 +
1690879666.100039-CDS-C-linearis_contig103:517642..5178001690879666.100039-CDS-C-linearis_contig103:517642..517800Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 517643..517800 +
1622927380.2038052-CDS-C-linearis_contig103:518164..5184061622927380.2038052-CDS-C-linearis_contig103:518164..518406Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 518165..518406 +
1690879666.1096435-CDS-C-linearis_contig103:518164..5184061690879666.1096435-CDS-C-linearis_contig103:518164..518406Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 518165..518406 +
1622927380.216863-CDS-C-linearis_contig103:518628..5194611622927380.216863-CDS-C-linearis_contig103:518628..519461Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 518629..519461 +
1690879666.1214638-CDS-C-linearis_contig103:518628..5194611690879666.1214638-CDS-C-linearis_contig103:518628..519461Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 518629..519461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.856.1prot_C-linearis_contig103.856.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig103 511907..519461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig103.856.1

>prot_C-linearis_contig103.856.1 ID=prot_C-linearis_contig103.856.1|Name=mRNA_C-linearis_contig103.856.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1043bp
MADTKTPSSFDGAEHDATPAADEKKDGESGVGSADERAPAAGHEWPTLEG
KASDVWPRGAAVLQDAEAAAAAGDTEGDADTIKAVETVLGKHPLPVDEAL
AALRPSGGGDGSTTSFFRTMSAPGDGCHVARAWAEVFSAALPPAKMTEAC
TAGFVTCCAPDPRRFLCGISVFFAYGAEIAPRELIGLATVLTVEELKGAF
LGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEI
LERLPQSIADFPGGVKACEDVFEPEIAGIVRGHGFRGPLRLALQERQFSA
TLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTSTTSATTHTP
EAETKAPPPTTATVATTKAAAAATAAAAAAAAATIVTSLSERGGRKGRDF
LYSDGFVADSKFGKLMQGLGWTVYNTRTYRSVDSSKPTDRDWERIFNGTV
LLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVLENDNG
ELSNTEIVLTFYVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGG
LFVRVVDSDVHLGRGLLALSAPLMFSRVLFFGQILRRQGLVIQMMAILFG
EMLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFED
LYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVEQQQDRAFR
EDKVRIMKLYGRMVEGDQLPTPFNLLQLALWLPFSVIDRLFGVDTSAKIV
HEFGVGIAWLMLGPPVLLAAWGLWVASVPTAVLRVWRRANFTGKSLTFAV
ICSSVVVALHTLVLPFVALLFWAMSGLGLLVTVFRELGASLCGNDATARG
GDAAGESGDQHRCARRGAADAKAASTDGEGTGAAVCPASVAQILKHADDT
PATSGRRRSLGRGGGGGHGDQSGLSVAEIVAHLDDLETSERREQQEQTAT
WEQVARMRNHLDAAGKDRSEAVLARLAIVDASLKASIVELVERSVASGVE
RGLRDGLEETVAALVQERVAAVLERSKAPPRTSFVAEFSADG*
back to top

mRNA from alignment at C-linearis_contig103:511092..520110+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig103.856.1 ID=mRNA_C-linearis_contig103.856.1|Name=mRNA_C-linearis_contig103.856.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=9019bp|location=Sequence derived from alignment at C-linearis_contig103:511092..520110+ (Chordaria linearis ClinC8C monoicous)
CTTCCCTCGTCCCGCCTCTGTCTCCTCGTCCTTCAAAGGGCCGCATCACG TGAAGGTGGGCCGCGAGGTGCAGTTGTGTGTGGCCGTGTGCCGTCGCTGT CGACCTCTGCTACCCCTGCCAGGTAGCCGCAATTGCATTGCACTTCCCGC GGGTCAACTCACTGTTTTTAGCCTTCGCCCCGCAACCTGGACACCCCCCA CTGGTGCCTATCACACCGGCTCTTCCTGCGACGGGAGGTAGCGTTCTGAA GCTTTCTGAATAAGGTGAAAAGTGTTCCATTGTGGTTTTGGCATCTCTTC TGCTGTCTCCGAGTCTCCGAACTGCGAGAAGCAACTAATACACACACACA GCCCCAAAATTCGGAACTTTTCCCCGGCCAGTGAGTGTTGTTGAACACTT ACTTTCGGCTGGCCTACTGGGAGTGCACGCTCCCGCCACCCTCGCTCTTT GGGCAGTAGAATATGCTGTTAACGTGCAGGAGAAGCGAGATACCCGATCC CGCCCAAATTTTGCAGGAGCACGGACGTAAATGTTTGATTAGTATCATGC ACGTACGTATGATACATACGAACAGCACAGTCAGTCGATTCCGATGCCCA CCACGACGTCTGTCTAGACTAGACTACACCTTCAACATGAGGTACGGTGA TTCTTCTGTTCTGACGTTCTCACCCATGCCGGCGACTGCCCTCTCTTGAC ACCACATGGTAACCCTCTACACAAGGACAGTCTGCCCAACGCACCTCGAC GAGCTCTCTCGTCGGCCGCACCACCTCTCGAGAAAGAAGCAGCGGTGTCC GGAGACCGCACCCCTATGGCGGATACGAAGACACCGTCGTCGTTCGACGG CGCCGAACACGACGCCACACCCGCTGCAGACGAAAAGAAGGACGGTGAAA GTGGCGTGGGCAGCGCGGACGAACGAGCACCAGCAGCAGGGCACGAATGG GTAGTGTATAACACCCATCAGCAGAATCCACATATTGTACATATTTTTGG CCAATCCAACGTCTTGATTTCGCCCATGCAGCTGTCCTCCTTAATTAAGT ATAGGGTAAGTTTTATACCCCTACCCTTAAGTCTGGTCCGTAATGTCCTC AGTGTGGACTTCTCTCTTACGCTTATCTACATTCTATTCTTTACTCTTTG GTGCAACACTGCAGCCAACGCTCGAGGGAAAAGCCTCGGACGTCTGGCCC CGCGGTGCTGCCGTCCTTCAAGATGCTGAAGCCGCTGCTGCCGCCGGCGA CACCGAGGGGGATGCTGACACGATCAAGGCCGTTGAAACGGTTCTCGGGA AGCACCCTTTGCCAGTGGACGAGGTTGGCGGCACGAGAAATTACGTGCCA AGAACAGATAGATGGTATTAAGCAAGATGATGAGTGTCTCCACGATGAGA GACTCCAGGGAAGCATCAGCTTGTAATTACTTATTACTCCCGTCGCTGTC CGGATTTTCATCTTTCGAAGTAGTCGCAATCTGTCGCTATACTTTCTTAA GTTTTTGGCCCGTGAACCACAATGACTACCAAATAGCCGCCGATTTCTTC GGCCCAAACGTGCGCTTCTCATCTCCACGCAATGTTTTTACGTCTCCTTC ACACCCTCCAGTTTGCGTGCAACGGTACCTGCCCGTCGAGAAGTCAATAC ACGAATTTGGTGCATGTTTCAAAATGGTCGTAATGCTGCTCCGGGGCCGG TGCGTGTGTTTGTTCCATCTTTTCAACTTGGTGTCTCAGGCCCTGGCCGC ACTTCGACCAAGCGGTGGTGGAGATGGGTCAACTACTTCTTTTTTCAGAA CGATGTCGGCTCCTGGCGACGGCTGTCACGTCGCTCGAGCATGGGCGGAG GTTTTTTCCGCGGCGCTCCCACCTGCCAAGGTTTGAGTTGTGTTGTGGCA CCGTGCATAGGGGCGGCTGCAGGTACTTTGAGTGGAGATAATTGAACGGT CTCAGAATTTGAAGACAACAGTAGCAGTTGCAGCAACAACATTACCAGTG GAAGGTGGAGACCAGCCGCGGAATCGGTTTCGACATGGATGGCGGTGTGG CATGTTCAAAGCAAACATTGAGAAAGAGCACACGAAATACGAACAGGGCC GCTAATCGACACTGTAGAACAGTTAAGTTGTGCCGCTTCCCACCCCCGCA CCCACCGTTTACTTCTCTTTTTTTTTCTTCGTTTGGTTTCGGGTTCTCCA GATGACCGAGGCGTGCACGGCCGGCTTCGTCACCTGCTGCGCGCCAGATC CCCGCCGATTCCTGTGCGGGATATCGGTTTTCTTCGCCTACGGAGCAGAG ATCGCACCCAGGGAGCTGATCGGGCTCGCGACGGTGCTGACGGTGGAAGA GCTCAAGGGAGCCTTTCTGGGCGGGCTAGCGTGCGTCGATAATCCCTTCA TCCCGGGCGTCAGGTAGGATGCATGGCATGTTGGTTCGTCGTCGGGGCTG CGGCCGACATCCGTGTTGATTGCCTCTCTCTTGGTTCGTTTTTATCTGGA GCATCGCACGTGGGTGTTGTCGCTTCTAAGCTTGGGAACGAGCACATGAA GTGGTTGTCGAAACGAGTGTGTCTGTGGCGCAAACGATATCTTGCCAGGG GAGAGACAGAGGCTTACGTACCCAGGATGTAAGATGTAGGCTCCGTTACC TGCCAGCGTTGTTGTCAACTGGTTTGCCATGGCTGAAACTGCTGTCTGCT ACCTGCCTCTGGTCTCTCTCTTTCCCCCTCTCTCTCTTTCTGTGTGCGTC GGCGTTGTTTTGCACCCCTCGATACGACTATAACTCCGTCCGCAGCCTAT CCGTGGCGCTGGAAGAAGCCACCAAGAACTCCCGGGAGAGAGAGCGACCG ATCCTCACGGCCCTCCAAGAGAGTGTAGATGACCTCATCCTCGAGGTATG TTGCGGCAGGGGAGCTTCCCGGCTTCCCTCTAAACCATTTAGGGTTTTCT GCTCCTCTAGTGTGTTCATCGTATTCAGTAGAACTTGGCGTTAGACAGCA CAATCTGCTGATTTGCATTTGGTTTCTGCTGGTACGAGCAACCTAACCTA GCTCGCCGCCTTTTCGTTCCTACCAACAGGTTTTTTACCGCGTCTTATTT GTTCGAAACCCCTCGGTGTGTTTATATTTTAGATCCTGGAGAGACTGCCG CAATCTATTGCCGATTTTCCCGGCGGGGTGAAGGCATGCGAGGACGTTTT CGAGCCAGAGATCGCCGGCATCGTGCGGGGGCATGGCTTCCGAGGGCCTC TGCGGCTGGCGTTACAGGAGCGGCAGTTTTCGGCGACGTTGTGCGTCGCG CCGCTCATGCACGATTACATGTCCTACAGGTAGGTATGCTTGCTTTTCGC AGACACCACAGAGAGCTTTGTGTTGTTTGACAGGTTTTGGGGATCATTCA AAGGCGCGTTTGAGATGATCTCAACCGTTGATCGACTTCGCGTGGCGCGC AGGTTTGTCGCCGGTCTTCCCGACCTTCAAGATTCGAACAACCTCCTCGG CCGACCCAAGAGAACAAAAGCAGTAACCTCAACAACATCGGCCACAACCC ATACCCCCGAAGCGGAAACAAAGGCACCACCACCAACAACAGCAACAGTA GCAACAACAAAAGCGGCAGCAGCAGCGACAGCAGCAGCAGCAGCAGCAGC AGCAGCAACCATCGTTACATCCTTGTCGGAGCGCGGGGGCCGCAAGGGAC GAGACTTCTTGTACAGCGATGGCTTTGTGGCAGATTCGAAGTTCGGGAAG CTGATGCAGGGGCTGGGATGGACGGGTCGGAGAACAAAGCCGAAGCCAGA CTCCGACAACAGGCGAGACAAATGCCCCAAAACGAAGGCATTGGCCGGAG CACTTATCTTGTTGGGTTGTTGTTGATGTTTTGGGCTTGTCAGGTTACCT CTATTTATCGGTACAAAGTACGTGGATCTGCAGCTGCTGTCGGATGACAC ACAAATTGAATACCAAAAAATCTTTCCTTGGAGTCGGAACAGGTGATCGT GTCTCTTGAATGAGAGAGTATGTGGATACAGGGGCGAGGAAGGGGGCACC GTGAAGTATACCAGTTTCGTGCTTGGCTTAGTCTTCGACCGTCAACCTCT CATTTCACCTCTTTCGAGATGGGGCACTGTGTCCTTTTGCCTCTCCGAAG GACACGTTGACACATGGGTTCCCCGCCTCCACATATGACCGGTTATGGGT CTGAAAACTTGGCTGTCCGTGTTTTTCGTTGTCTCTCGCATTCACGAAGG CACAGAAGCTCAGATTAAAAGTATACAATACGCGCACCTATCGCTCCGTG GACTCTAGCAAGCCTACAGATAGGGATTGGGAGCGAATTTTCAACGGGAC GGTTCTACTCGGCTTGCAGTTCATCACCATCGGGGTGCTCACAAAACCTG CGGCTTACTACAAGGTACTGGACCATCATAAAACTGCCTTGAGAAACCGT CTACGTATTTGAGGATAAACTGCGTCATCGACTGAATGGAACCGACACGT AAGATGTGTATCTTTCGATAAAAGGGGTTGAAGGCCCCACTTGAAGGATT CCATGCTAGACTGAGAAAGTCGCAGGTACCCCACAAAAATTGCTATGTTC ATGAAAACGCTCTAGGTCTGGTCGCGCTTCCACTGTCTGACTAGGCGCGG AATCCGGATATAGCTACACCCAATCGAAGCGCGTACATCATGAGTCGGTG CCAATCATTCTTGCTGGGAAGGTGCCGGCTGTACCGGCTGTCCATTTTGT GCTGGCGAAGAGCCAAGCGCCAGTGACATGCACCTCTCACATCCGACGGT GCAATTAATCGTTCTTGCTTCGAAGGTACCGGCTATCCGTATGGCGCTTA GTTTGTACGTGCACCTCGTCATGCTCGCTCTGTACACCACGGTCGTCTTG GAGAACGACAACGGCGAGTTGAGCAACACGGAGATCGTTTTGACGTTCTA CGTCATGGTGAGTGCCTTGTTGTTGCTGTTGACTTGCCTTAACCCAGCCT GGCCGAGACCCAACGCTCCGGTTGAAGTTTGAGCGACAATGTGACGAAGC AGCAGACAGCTGAAAAAATGTCACAGGGATCTCGCTCGGCTTTCGGCCCG CCCCGCTCTTCTTCTGGCAGGCACTTGATGCCATTCAAATTCAACCAAAA TTCACCGAACGTTGCCCACCACAACCAAGCTCATCCCTGGCCCAGTTCCA TTCGACATGCACACCTCGCCACGTCTCGAACAAATTTATGCTTCCCCTCC CTGACGATCACCCCCCCTCCGCCAAAAACAAACCAACCCACGGCTCCCGC ATTTCGGGGTCGGCAGGCCGAGATCGTGAGCAACCTGGTCCAGATGTGGG ACAACTTCTTCGAGTACGTGCGGAACAAGTGGAATTGGCTGGAGTGCCTG TCCCTGTTCCTGCTGGCCGGCGGGCTGTTCGTCAGAGTGGTGGATTCAGA CGTGCACCTCGGAAGGGGACTCTTGGCGCTCAGCGCCCCGCTCATGTTCT CGCGCGTCCTCTTTTTCGGGCAAATCTTGAGGCGCCAAGGACTCGTGATC CAGGTAATGCTCCTCGCTACGAAGTTGTTTTTCCCCCTGTTTTTATCTAA ATGATAGTCTAGCAGCTTTTCAAGGAGGCTTGTTGTAGACATGCGAGCCT TTCCTCACCGCCCCGTTTTATGGTCACTGATTGTTTCCGTTATGGTTCTG TCGCTTGACCCGCGAGCCCACATGCGAAATGAAGAGGTCAGCAGGCAGGT TGTGTTGATATTTCGGGAGAAGGGAACGTTAAACGTTTCTCCTTTCGTTC GTTCTCTGTTTGTTCTCCGTGTTTTTGGCGGTCTGCGCTTTCGCCCACTC TGAGGAACGAACCAAACTGTCTTTGTCGGGTGCAAGGAGAATGTATATTA CTCCCATATACCAGACGCACGCAATATCACGCGCGCACATGACCAAATAC GTGTTTGTTGGCTGTCTTTGTTGGCGGCCTAAACGTCAAAATGAACGTCG GCGCAGATGATGGCGATCCTGTTCGGGGAGATGCTGCAGTTCGGGCTAGT CCTCGGCACGATTATGATGGGCTTCACCGTGAGCTTCTTCGCCCTCTTCA GGGAAGACCAGTCTTTCGGCGAGGTGGGAGATACCAGGATCTTCTAGGTG GTTCTAGGCAATGGACATTTTCGGCTGAATTCGTGGGGGTTACCTGAATT CTTCGGGGACTTCGTGTGGGCGCAGAGATCCCCCTCCGGGAGAGCCAGTC CCCCCTCACTCGTAAAATACCAAGGGCTTGGAGTCAACCCTTTACGTTCG TCCTTTGATTCGGCAGCCGACGTCCAAACAAGATTGGGTCGGTCTTTGGA GACTTGCAGGTTTGGGGTTTCGAGGGGCATCGATGCTGATTTTAATTTCA AACGTTTTCGTGCATACTGCCCCCAGCCTTGGTCGGTGCACACACGTTCA TACATGACCTACACCCTACAACGCTGGTTGAGTATGCTTCCTGCATCGCC TATATCGTATATTTCGGTCGACGTTTTTGCAAAATGCTGCTGTGACAACA GTGCTGGCTTGACGTCTTCAAAGCCATGCTGGGCGAGGTCGGTGTGTTCG AGGATCTGTACGAGGACAGCGTTTACCGGAACGTGGCCAAGGTTCTCCTC GTAGTGTATCTGCTCGTTGTCGCGGTCATGCTGCTCAACCTTCTCATCGC GGTGCTGAGGTGCGTCAATTTGCATCAGTCTACTGCATCTTCGTCCTCTG TGGGCCTTCGCGTTTTTTTTTTGTGGGGTGTGGCTCTCATCTTGAGTGCT GCGTTTCTGTTCTTTTGTATTCTGTTGATGAATGGCTTTTCTTGGTATAA TAGGAGGTGCCGAATCCACCGAAACACGGCAACTACGCACGGACCCCGAT AGGGCAGCATCAGAATAGCGCTTCCCGCCGAAAGCCACAATATCTAGCTT GATATTGTTTGGTTTCTGCTGCGCGATTGTTTGAACACGACAGCTTTCAA AACCAACCTTAAACCTGTTTGGCCGTGTGGGCGCTTTGCCATGGCCACCT CAAACCCCTTAAAACCTTGTCAGCACGGAACACGCCAAGGTAGAGCAGCA GCAGGACCGAGCCTTCCGAGAAGACAAGGTCCGGATCATGAAGCTCTACG GGCGGATGGTGGAGGGCGACCAGCTCCCTACACCCTTTAACCTCCTGCAG CTGGCTCTGTGGTTGCCTTTCAGCGTCATCGACCGTTTGTTCGGCGTCGA TACGAGCGCCAAGATCGTGCACGAGTTCGGCGTGGGTATCGCCTGGCTTA TGTTAGGCCCTCCAGGTACGGGCAGACCAGCAGCAGCTGCGACCGCGGTA GTAGATCCGACGTGACGTCCCAGGTGGCGATCCTTGGTCGATGCTTGCAT GTTTGGGTAGTTTTTCAACCAGTTCGACAAAGGCCAAACGATGACCACTC TCTTCGACCCTCGTACCGATAGCGTTTCACTGTCTACCCAAATGCTCTTG CCCGGTACAACAAAACTTACTTCGCTGCCGATCCCAGTGCTCTTGGCCGC GTGGGGGCTGTGGGTAGCATCGGTACCCACGGCTGTCCTCAGGGTCTGGC GGAGGGCCAACTTCACGGGGAAGTCCCTGACCTTCGCCGTCATCTGCAGC TCGGTCGTAGTCGCCCTTCACACCTTGGTGCTGCCGTTCGTGGCGCTGCT GTTCTGGGCGATGTCGGGGCTCGGCCTGCTGGTGACGGTGTTCCGGGAGC TGGGGGCTTCCCTGTGCGGCAACGATGCTACCGCCCGCGGTGGTGATGCC GCCGGGGAAAGTGGTGACCAACATCGGTGCGCCCGCCGTGGCGCCGCCGA CGCTAAAGCTGCTTCCACTGATGGTGAGGGGACTGGTGCTGCGGTGTGTC CTGCAAGCGTCGCGCAGATACTCAAGCATGCAGATGACACGCCGGCGACG TCAGGGAGGAGAAGAAGCCTTGGGAGGGGCGGCGGCGGAGGCCACGGCGA CCAATCTGGCTTGAGCGTAGCCGAGATCGTGGCCCACCTCGACGACCTCG AGACCAGCGAGCGGCGAGAGCAGCAGGAACAAACCGCGACGTGGGAGCAG GTCGCCCGCATGCGGAATCACCTGGATGCCGCCGGCAAGGATAGGAGCGA AGCTGTGCTAGCCCGACTAGCGATAGTCGATGCCAGCCTCAAGGCGAGCA TCGTGGAGCTGGTGGAGCGAAGCGTGGCTAGTGGCGTGGAGCGTGGGCTC AGGGACGGCCTGGAGGAGACCGTCGCCGCGCTGGTTCAAGAGAGAGTTGC TGCGGTGTTGGAGCGGAGTAAGGCGCCTCCGCGGACGAGCTTTGTGGCGG AATTTTCTGCAGATGGCTGATGATTTCTTGAGGCAGTTTCGGGCACGGAA GTACTGTTGAGCTTCCGTGGCGAAATTGTTCAGTTGAGAACTCTTCAACC TTCTTTTGGCTATATGCTTCGAATTTCCATAGCCATACAATTTCGAGGTT GGTTGTCAACGGACGGCTGGTGTCCTTGGAACCGATTGTAGCATGGAAGT GAGGATTTGGATTTCACGCACAGAGCCTTCGTTGCGATCTGTTTGAAAGT GAAAAGTGTTGACCCTACTTTTGGTTTTATATTTTCAACAGCAGATTGTT GAGTAGTTATTGCCGGACGGCTGATGTTCTTGCAGCCGGTTATTACACCG GTTTGTATGGGAGCAGAAAGTTGCGAAAAAAGTGAAAGTTTTTTTGGCTA CTTTCTGTCGACTGTCGGGAACTTTTTGCAAAAACACTTAAGGTGCACGC GCTTTATGGGGCGACGAAAGCTTTGTGCACGAGACTGTTCGATTGCGGAG GCGCGTGCCCGCGTGCCCTATTTTTATTTATTTTCATTGGGTAACGGCGA GAAGCGAAGCACGCTCTTTCATGCCACACCGCGAAATCGGCTTGTAGAGC GCCCCACACAAGCAAGGAAACCAGTTGGTGGTGTCATATCTCTCGCAATG CCTATCAATCAAACTAGGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig103:511092..520110+

>mRNA_C-linearis_contig103.856.1 ID=mRNA_C-linearis_contig103.856.1|Name=mRNA_C-linearis_contig103.856.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=6258bp|location=Sequence derived from alignment at C-linearis_contig103:511092..520110+ (Chordaria linearis ClinC8C monoicous)
ATGGCGGATACGAAGACACCGTCGTCGTTCGACGGCGCCGAACACGACGC
CACACCCGCTGCAGACGAAAAGAAGGACGGTGAAAGTGGCGTGGGCAGCG
CGGACGAACGAGCACCAGCAGCAGGGCACGAATGGATGGCGGATACGAAG
ACACCGTCGTCGTTCGACGGCGCCGAACACGACGCCACACCCGCTGCAGA
CGAAAAGAAGGACGGTGAAAGTGGCGTGGGCAGCGCGGACGAACGAGCAC
CAGCAGCAGGGCACGAATGGCCAACGCTCGAGGGAAAAGCCTCGGACGTC
TGGCCCCGCGGTGCTGCCGTCCTTCAAGATGCTGAAGCCGCTGCTGCCGC
CGGCGACACCGAGGGGGATGCTGACACGATCAAGGCCGTTGAAACGGTTC
TCGGGAAGCACCCTTTGCCAGTGGACGAGCCAACGCTCGAGGGAAAAGCC
TCGGACGTCTGGCCCCGCGGTGCTGCCGTCCTTCAAGATGCTGAAGCCGC
TGCTGCCGCCGGCGACACCGAGGGGGATGCTGACACGATCAAGGCCGTTG
AAACGGTTCTCGGGAAGCACCCTTTGCCAGTGGACGAGGCCCTGGCCGCA
CTTCGACCAAGCGGTGGTGGAGATGGGTCAACTACTTCTTTTTTCAGAAC
GATGTCGGCTCCTGGCGACGGCTGTCACGTCGCTCGAGCATGGGCGGAGG
TTTTTTCCGCGGCGCTCCCACCTGCCAAGGCCCTGGCCGCACTTCGACCA
AGCGGTGGTGGAGATGGGTCAACTACTTCTTTTTTCAGAACGATGTCGGC
TCCTGGCGACGGCTGTCACGTCGCTCGAGCATGGGCGGAGGTTTTTTCCG
CGGCGCTCCCACCTGCCAAGATGACCGAGGCGTGCACGGCCGGCTTCGTC
ACCTGCTGCGCGCCAGATCCCCGCCGATTCCTGTGCGGGATATCGGTTTT
CTTCGCCTACGGAGCAGAGATCGCACCCAGGGAGCTGATCGGGCTCGCGA
CGGTGCTGACGGTGGAAGAGCTCAAGGGAGCCTTTCTGGGCGGGCTAGCG
TGCGTCGATAATCCCTTCATCCCGGGCGTCAGATGACCGAGGCGTGCACG
GCCGGCTTCGTCACCTGCTGCGCGCCAGATCCCCGCCGATTCCTGTGCGG
GATATCGGTTTTCTTCGCCTACGGAGCAGAGATCGCACCCAGGGAGCTGA
TCGGGCTCGCGACGGTGCTGACGGTGGAAGAGCTCAAGGGAGCCTTTCTG
GGCGGGCTAGCGTGCGTCGATAATCCCTTCATCCCGGGCGTCAGCCTATC
CGTGGCGCTGGAAGAAGCCACCAAGAACTCCCGGGAGAGAGAGCGACCGA
TCCTCACGGCCCTCCAAGAGAGTGTAGATGACCTCATCCTCGAGCCTATC
CGTGGCGCTGGAAGAAGCCACCAAGAACTCCCGGGAGAGAGAGCGACCGA
TCCTCACGGCCCTCCAAGAGAGTGTAGATGACCTCATCCTCGAGATCCTG
GAGAGACTGCCGCAATCTATTGCCGATTTTCCCGGCGGGGTGAAGGCATG
CGAGGACGTTTTCGAGCCAGAGATCGCCGGCATCGTGCGGGGGCATGGCT
TCCGAGGGCCTCTGCGGCTGGCGTTACAGGAGCGGCAGTTTTCGGCGACG
TTGTGCGTCGCGCCGCTCATGCACGATTACATGTCCTACAGATCCTGGAG
AGACTGCCGCAATCTATTGCCGATTTTCCCGGCGGGGTGAAGGCATGCGA
GGACGTTTTCGAGCCAGAGATCGCCGGCATCGTGCGGGGGCATGGCTTCC
GAGGGCCTCTGCGGCTGGCGTTACAGGAGCGGCAGTTTTCGGCGACGTTG
TGCGTCGCGCCGCTCATGCACGATTACATGTCCTACAGGTTTGTCGCCGG
TCTTCCCGACCTTCAAGATTCGAACAACCTCCTCGGCCGACCCAAGAGAA
CAAAAGCAGTAACCTCAACAACATCGGCCACAACCCATACCCCCGAAGCG
GAAACAAAGGCACCACCACCAACAACAGCAACAGTAGCAACAACAAAAGC
GGCAGCAGCAGCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCATCG
TTACATCCTTGTCGGAGCGCGGGGGCCGCAAGGGACGAGACTTCTTGTAC
AGCGATGGCTTTGTGGCAGATTCGAAGTTCGGGAAGCTGATGCAGGGGCT
GGGATGGACGGGTTTGTCGCCGGTCTTCCCGACCTTCAAGATTCGAACAA
CCTCCTCGGCCGACCCAAGAGAACAAAAGCAGTAACCTCAACAACATCGG
CCACAACCCATACCCCCGAAGCGGAAACAAAGGCACCACCACCAACAACA
GCAACAGTAGCAACAACAAAAGCGGCAGCAGCAGCGACAGCAGCAGCAGC
AGCAGCAGCAGCAGCAACCATCGTTACATCCTTGTCGGAGCGCGGGGGCC
GCAAGGGACGAGACTTCTTGTACAGCGATGGCTTTGTGGCAGATTCGAAG
TTCGGGAAGCTGATGCAGGGGCTGGGATGGACGGTATACAATACGCGCAC
CTATCGCTCCGTGGACTCTAGCAAGCCTACAGATAGGGATTGGGAGCGAA
TTTTCAACGGGACGGTTCTACTCGGCTTGCAGTTCATCACCATCGGGGTG
CTCACAAAACCTGCGGCTTACTACAAGTATACAATACGCGCACCTATCGC
TCCGTGGACTCTAGCAAGCCTACAGATAGGGATTGGGAGCGAATTTTCAA
CGGGACGGTTCTACTCGGCTTGCAGTTCATCACCATCGGGGTGCTCACAA
AACCTGCGGCTTACTACAAGGTACCGGCTATCCGTATGGCGCTTAGTTTG
TACGTGCACCTCGTCATGCTCGCTCTGTACACCACGGTCGTCTTGGAGAA
CGACAACGGCGAGTTGAGCAACACGGAGATCGTTTTGACGTTCTACGTCA
TGGTACCGGCTATCCGTATGGCGCTTAGTTTGTACGTGCACCTCGTCATG
CTCGCTCTGTACACCACGGTCGTCTTGGAGAACGACAACGGCGAGTTGAG
CAACACGGAGATCGTTTTGACGTTCTACGTCATGGCCGAGATCGTGAGCA
ACCTGGTCCAGATGTGGGACAACTTCTTCGAGTACGTGCGGAACAAGTGG
AATTGGCTGGAGTGCCTGTCCCTGTTCCTGCTGGCCGGCGGGCTGTTCGT
CAGAGTGGTGGATTCAGACGTGCACCTCGGAAGGGGACTCTTGGCGCTCA
GCGCCCCGCTCATGTTCTCGCGCGTCCTCTTTTTCGGGCAAATCTTGAGG
CGCCAAGGACTCGTGATCCAGGCCGAGATCGTGAGCAACCTGGTCCAGAT
GTGGGACAACTTCTTCGAGTACGTGCGGAACAAGTGGAATTGGCTGGAGT
GCCTGTCCCTGTTCCTGCTGGCCGGCGGGCTGTTCGTCAGAGTGGTGGAT
TCAGACGTGCACCTCGGAAGGGGACTCTTGGCGCTCAGCGCCCCGCTCAT
GTTCTCGCGCGTCCTCTTTTTCGGGCAAATCTTGAGGCGCCAAGGACTCG
TGATCCAGATGATGGCGATCCTGTTCGGGGAGATGCTGCAGTTCGGGCTA
GTCCTCGGCACGATTATGATGGGCTTCACCGTGAGCTTCTTCGCCCTCTT
CAGGGAAGACCAGTCTTTCGGCGAGATGATGGCGATCCTGTTCGGGGAGA
TGCTGCAGTTCGGGCTAGTCCTCGGCACGATTATGATGGGCTTCACCGTG
AGCTTCTTCGCCCTCTTCAGGGAAGACCAGTCTTTCGGCGAGTGCTGGCT
TGACGTCTTCAAAGCCATGCTGGGCGAGGTCGGTGTGTTCGAGGATCTGT
ACGAGGACAGCGTTTACCGGAACGTGGCCAAGGTTCTCCTCGTAGTGTAT
CTGCTCGTTGTCGCGGTCATGCTGCTCAACCTTCTCATCGCGGTGCTGAG
TGCTGGCTTGACGTCTTCAAAGCCATGCTGGGCGAGGTCGGTGTGTTCGA
GGATCTGTACGAGGACAGCGTTTACCGGAACGTGGCCAAGGTTCTCCTCG
TAGTGTATCTGCTCGTTGTCGCGGTCATGCTGCTCAACCTTCTCATCGCG
GTGCTGAGCACGGAACACGCCAAGGTAGAGCAGCAGCAGGACCGAGCCTT
CCGAGAAGACAAGGTCCGGATCATGAAGCTCTACGGGCGGATGGTGGAGG
GCGACCAGCTCCCTACACCCTTTAACCTCCTGCAGCTGGCTCTGTGGTTG
CCTTTCAGCGTCATCGACCGTTTGTTCGGCGTCGATACGAGCGCCAAGAT
CGTGCACGAGTTCGGCGTGGGTATCGCCTGGCTTATGTTAGGCCCTCCAG
CACGGAACACGCCAAGGTAGAGCAGCAGCAGGACCGAGCCTTCCGAGAAG
ACAAGGTCCGGATCATGAAGCTCTACGGGCGGATGGTGGAGGGCGACCAG
CTCCCTACACCCTTTAACCTCCTGCAGCTGGCTCTGTGGTTGCCTTTCAG
CGTCATCGACCGTTTGTTCGGCGTCGATACGAGCGCCAAGATCGTGCACG
AGTTCGGCGTGGGTATCGCCTGGCTTATGTTAGGCCCTCCAGTGCTCTTG
GCCGCGTGGGGGCTGTGGGTAGCATCGGTACCCACGGCTGTCCTCAGGGT
CTGGCGGAGGGCCAACTTCACGGGGAAGTCCCTGACCTTCGCCGTCATCT
GCAGCTCGGTCGTAGTCGCCCTTCACACCTTGGTGCTGCCGTTCGTGGCG
CTGCTGTTCTGGGCGATGTCGGGGCTCGGCCTGCTGGTGACGGTGTTCCG
GGAGCTGGGGGCTTCCCTGTGCGGCAACGATGCTACCGCCCGCGGTGGTG
ATGCCGCCGGGGAAAGTGGTGACCAACATCGGTGCGCCCGCCGTGGCGCC
GCCGACGCTAAAGCTGCTTCCACTGATGGTGAGGGGACTGGTGCTGCGGT
GTGTCCTGCAAGCGTCGCGCAGATACTCAAGCATGCAGATGACACGCCGG
CGACGTCAGGGAGGAGAAGAAGCCTTGGGAGGGGCGGCGGCGGAGGCCAC
GGCGACCAATCTGGCTTGAGCGTAGCCGAGATCGTGGCCCACCTCGACGA
CCTCGAGACCAGCGAGCGGCGAGAGCAGCAGGAACAAACCGCGACGTGGG
AGCAGGTCGCCCGCATGCGGAATCACCTGGATGCCGCCGGCAAGGATAGG
AGCGAAGCTGTGCTAGCCCGACTAGCGATAGTCGATGCCAGCCTCAAGGC
GAGCATCGTGGAGCTGGTGGAGCGAAGCGTGGCTAGTGGCGTGGAGCGTG
GGCTCAGGGACGGCCTGGAGGAGACCGTCGCCGCGCTGGTTCAAGAGAGA
GTTGCTGCGGTGTTGGAGCGGAGTAAGGCGCCTCCGCGGACGAGCTTTGT
GGCGGAATTTTCTGCAGATGGCTGATGCTCTTGGCCGCGTGGGGGCTGTG
GGTAGCATCGGTACCCACGGCTGTCCTCAGGGTCTGGCGGAGGGCCAACT
TCACGGGGAAGTCCCTGACCTTCGCCGTCATCTGCAGCTCGGTCGTAGTC
GCCCTTCACACCTTGGTGCTGCCGTTCGTGGCGCTGCTGTTCTGGGCGAT
GTCGGGGCTCGGCCTGCTGGTGACGGTGTTCCGGGAGCTGGGGGCTTCCC
TGTGCGGCAACGATGCTACCGCCCGCGGTGGTGATGCCGCCGGGGAAAGT
GGTGACCAACATCGGTGCGCCCGCCGTGGCGCCGCCGACGCTAAAGCTGC
TTCCACTGATGGTGAGGGGACTGGTGCTGCGGTGTGTCCTGCAAGCGTCG
CGCAGATACTCAAGCATGCAGATGACACGCCGGCGACGTCAGGGAGGAGA
AGAAGCCTTGGGAGGGGCGGCGGCGGAGGCCACGGCGACCAATCTGGCTT
GAGCGTAGCCGAGATCGTGGCCCACCTCGACGACCTCGAGACCAGCGAGC
GGCGAGAGCAGCAGGAACAAACCGCGACGTGGGAGCAGGTCGCCCGCATG
CGGAATCACCTGGATGCCGCCGGCAAGGATAGGAGCGAAGCTGTGCTAGC
CCGACTAGCGATAGTCGATGCCAGCCTCAAGGCGAGCATCGTGGAGCTGG
TGGAGCGAAGCGTGGCTAGTGGCGTGGAGCGTGGGCTCAGGGACGGCCTG
GAGGAGACCGTCGCCGCGCTGGTTCAAGAGAGAGTTGCTGCGGTGTTGGA
GCGGAGTAAGGCGCCTCCGCGGACGAGCTTTGTGGCGGAATTTTCTGCAG
ATGGCTGA
back to top