prot_C-linearis_contig103.854.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig103.854.1
Unique Nameprot_C-linearis_contig103.854.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length143
Homology
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BLAST of mRNA_C-linearis_contig103.854.1 vs. uniprot
Match: D7FMF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF4_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 2.760e-41
Identity = 94/141 (66.67%), Postives = 108/141 (76.60%), Query Frame = 0 
Query:    1 MRFGALAWVIVCCQAAVTLIGGDAFVISKSFMRRAAALSESRGDTIHAATADQLERIVEGPVVDLRGGKTTGSKKGSSGXXXXXXXXXXXXXXXXXXXKEPKKPSFLATIKAFFKSLIDPHFVLKLEAKKEKHNTVHGSGS 141
            MR    A VI+CC AA TL    AFV+SKS +RRA ALSE R   + AAT  Q+E++V+GPVVDLRGGKTTGSKKG      XXXXXXXXXXXXXX      KPSF+ATIKAFF+SL++PHF LKL+AKKE+HNTVHGSGS
Sbjct:    1 MRLSTAASVIICCHAAATLNSSHAFVVSKSSIRRAGALSEGRESAV-AATMGQMEQVVDGPVVDLRGGKTTGSKKGKESSAKXXXXXXXXXXXXXX------KPSFIATIKAFFQSLVNPHFALKLQAKKEQHNTVHGSGS 134
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BLAST of mRNA_C-linearis_contig103.854.1 vs. uniprot
Match: A0A6H5KGU7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU7_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.510e-18
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 0 
Query:    1 MRFGALAWVIVCCQAAVTLIGGDAFVISKSFMRRAAALSESRGDTIHAATADQLERIVEGPVVDLRGGKTTGSKK 75
            MR   ++  I+CC AA TL    A V+SKS +RRA ALSE R   + AA  DQ+E++V+GPVVDLRGGKTTGSKK
Sbjct:    2 MRLSTVSSAIICCHAAATLNSSHALVVSKSSIRRAGALSEGRESAV-AAAMDQMEQVVDGPVVDLRGGKTTGSKK 75
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.854.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMF4_ECTSI2.760e-4166.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGU7_9PHAE3.510e-1858.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..142
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..15
score: 0.546
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:492790..495185 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.854.1mRNA_C-linearis_contig103.854.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig103 491801..495229 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig103.854.1 ID=prot_C-linearis_contig103.854.1|Name=mRNA_C-linearis_contig103.854.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=143bp
MRFGALAWVIVCCQAAVTLIGGDAFVISKSFMRRAAALSESRGDTIHAAT
ADQLERIVEGPVVDLRGGKTTGSKKGSSGKGSKSSSSKGKSSKLSKSKKE
PKKPSFLATIKAFFKSLIDPHFVLKLEAKKEKHNTVHGSGST*
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