mRNA_C-linearis_contig103.854.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig103.854.1
Unique NamemRNA_C-linearis_contig103.854.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig103.854.1 vs. uniprot
Match: D7FMF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF4_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 2.390e-37
Identity = 94/141 (66.67%), Postives = 108/141 (76.60%), Query Frame = 3 
Query:   45 MRFGALAWVIVCCQAAVTLIGGDAFVISKSFMRRAAALSESRGDTIHAATADQLERIVEGPVVDLRGGKTTGSKKGSSGXXXXXXXXXXXXXXXXXXXKEPKKPSFLATIKAFFKSLIDPHFVLKLEAKKEKHNTVHGSGS 467
            MR    A VI+CC AA TL    AFV+SKS +RRA ALSE R   + AAT  Q+E++V+GPVVDLRGGKTTGSKKG      XXXXXXXXXXXXXX      KPSF+ATIKAFF+SL++PHF LKL+AKKE+HNTVHGSGS
Sbjct:    1 MRLSTAASVIICCHAAATLNSSHAFVVSKSSIRRAGALSEGRESAV-AATMGQMEQVVDGPVVDLRGGKTTGSKKGKESSAKXXXXXXXXXXXXXX------KPSFIATIKAFFQSLVNPHFALKLQAKKEQHNTVHGSGS 134
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BLAST of mRNA_C-linearis_contig103.854.1 vs. uniprot
Match: A0A6H5KGU7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.360e-16
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 3 
Query:   45 MRFGALAWVIVCCQAAVTLIGGDAFVISKSFMRRAAALSESRGDTIHAATADQLERIVEGPVVDLRGGKTTGSKK 269
            MR   ++  I+CC AA TL    A V+SKS +RRA ALSE R   + AA  DQ+E++V+GPVVDLRGGKTTGSKK
Sbjct:    2 MRLSTVSSAIICCHAAATLNSSHALVVSKSSIRRAGALSEGRESAV-AAAMDQMEQVVDGPVVDLRGGKTTGSKK 75
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMF4_ECTSI2.390e-3766.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGU7_9PHAE3.360e-1658.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:491801..495229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_000940.1
Exons4
Model size1462
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.854.1prot_C-linearis_contig103.854.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig103 492790..495185 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927379.7458553-UTR-C-linearis_contig103:491800..4927891622927379.7458553-UTR-C-linearis_contig103:491800..492789Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 491801..492789 -
1690879665.7320602-UTR-C-linearis_contig103:491800..4927891690879665.7320602-UTR-C-linearis_contig103:491800..492789Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 491801..492789 -
1622927379.8052418-UTR-C-linearis_contig103:495185..4952291622927379.8052418-UTR-C-linearis_contig103:495185..495229Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 495186..495229 -
1690879665.7840636-UTR-C-linearis_contig103:495185..4952291690879665.7840636-UTR-C-linearis_contig103:495185..495229Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 495186..495229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927379.7585998-CDS-C-linearis_contig103:492789..4928561622927379.7585998-CDS-C-linearis_contig103:492789..492856Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 492790..492856 -
1690879665.7449057-CDS-C-linearis_contig103:492789..4928561690879665.7449057-CDS-C-linearis_contig103:492789..492856Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 492790..492856 -
1622927379.7698038-CDS-C-linearis_contig103:493641..4937781622927379.7698038-CDS-C-linearis_contig103:493641..493778Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 493642..493778 -
1690879665.7583008-CDS-C-linearis_contig103:493641..4937781690879665.7583008-CDS-C-linearis_contig103:493641..493778Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 493642..493778 -
1622927379.7815688-CDS-C-linearis_contig103:493945..4940811622927379.7815688-CDS-C-linearis_contig103:493945..494081Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 493946..494081 -
1690879665.7677283-CDS-C-linearis_contig103:493945..4940811690879665.7677283-CDS-C-linearis_contig103:493945..494081Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 493946..494081 -
1622927379.7911305-CDS-C-linearis_contig103:495096..4951851622927379.7911305-CDS-C-linearis_contig103:495096..495185Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 495097..495185 -
1690879665.7756944-CDS-C-linearis_contig103:495096..4951851690879665.7756944-CDS-C-linearis_contig103:495096..495185Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 495097..495185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig103.854.1

>prot_C-linearis_contig103.854.1 ID=prot_C-linearis_contig103.854.1|Name=mRNA_C-linearis_contig103.854.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=143bp
MRFGALAWVIVCCQAAVTLIGGDAFVISKSFMRRAAALSESRGDTIHAAT
ADQLERIVEGPVVDLRGGKTTGSKKGSSGKGSKSSSSKGKSSKLSKSKKE
PKKPSFLATIKAFFKSLIDPHFVLKLEAKKEKHNTVHGSGST*
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mRNA from alignment at C-linearis_contig103:491801..495229-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig103.854.1 ID=mRNA_C-linearis_contig103.854.1|Name=mRNA_C-linearis_contig103.854.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3429bp|location=Sequence derived from alignment at C-linearis_contig103:491801..495229- (Chordaria linearis ClinC8C monoicous)
CACACGCACCAACACCCAAGCGCCACCTCTCTGTCTGTAGCACCATGAGG
TTCGGCGCTTTGGCGTGGGTGATCGTCTGCTGCCAAGCTGCGGTGACCCT
GATTGGCGGCGATGCCTTCGTGATTTCCAAAAGGTGAAGAGAGATGGGAC
GATACGATAGCTTCATGATCAACCTGTACGCCTGTACGCGAGGAAACGTT
GTTAGAGGGCAACACTGGCTTGCAGCTCTTGCTGGCAGCTGGATGCTCTT
GTACAGGATGATTGCTAGAATCACGTCCACGGGGTTGGCCTTGTCGATCA
TGCAGGCTTTGTCGTCGTTGACCTGATAGTTTGGCGGCCAGGAAGGTGTT
GATGCTCCAGGAGTGAAAAAAAAACCGCGTGTGCCACTTGTCATCACGTG
GGATGAGAATGAGGATGCCTGTGCCTCACGGTGGCCGGAGTCAATGTGGG
TGGGCTGCTACTGCCAGTTTTGCCGGGGGGTTCTAAGCAGTGTAGCGAGG
TGAAATGTACGGCAACCTGTGGGCCCTAAAGTCGAAGTGCAATCTCCATT
CAGCCGGCACGAAAGCGGCGTTGTTTCCTTGTCGACGCGCTGCTGCTACT
GTGAATATACAGACATAAGTACATGTGTTTGGGCTTCCCTCATATCTAGC
GCCATGGTGTGTGTGATGCTTCGTGTCTTCGCCGTACAATTTGTTGTGCT
AGCAACTGGTTGTGTTGCGACACCAAGCCGCGGCAGCCCCCAACAAGTGC
TCTTGTCTCTGTCGTCGGACGTGTGCACTCCTTTATATGGCTCTCTCTGG
TTTGTTCCGCAACCAAACTGGCCTCTGCCCTTGACGGGGCCTGTTGAAAT
CTAGCGGACGGCACTGCCGTGTTTCTTTTTCTTCCCAAAAGCAGCACACA
AGTTCTACGTAGCGTTCTTTGTCTCTCCCTGCCACCCGCTGTGTGCTGTG
GACTTTGGCCCATTGGTAAGTAGCCACCGACGGTACTCTGCTGTCAGCAT
TTTATAGCATGTACTGACTGGTCCCGAAGCTGATCTGGCAGCGATCGACC
TACTCCACCCTCATTCATTGCAAACCCGACCAACCTGAGACGAAACATCC
ATTCATATCTCCATCTTTGTGTCTACTACCTATGTATTTCGGTATCAGTT
TTATGCGACGGGCGGCCGCGTTGTCGGAGAGCCGAGGGGACACAATACAC
GCCGCCACGGCGGATCAGCTGGAGCGGATTGTGGAAGGGCCCGTCGTAGA
TCTCAGGGGGGGCAAGACAACAGGGTCAAAAAAGGTGGGCGAATTCTGGG
ATACATGGTTATGCATCGTCCACTGCTCGAGGTTACCTGTACCTGATATG
TAGTTCATGAAGTCATTAACGGTTCACCTCTTGTAAGGGATTGGGTTTGA
GCAACCCCGCCATCCCGCCTCGCGGTTTACATCATTCTTCTCTTTGCGCA
GGGGTCGTCTGGAAAGGGCAGTAAGTCGTCGTCGTCAAAAGGAAAGAGCT
CCAAGCTGTCCAAGTCCAAGAAGGAGCCCAAGAAGCCGTCCTTCTTAGCC
ACCATCAAGGCGTTCTTCAAGTCGCTCATCGACCCACAGTGAGTGCTTTA
GCAGTAGGATTCTCCTGTCTTTTGCAGTAGTCTAGTGTTTCCCCACCCAA
CGATGCGATTTTCCGTCAAGCGGCGATCGAATTGAGCGCTTTATTCTCAG
AGCTCCTCCAGCGATGCTTCGACCATGTGCGGTTTGTCAGGTCCTGTACG
TGGCTCCTGTGCTCTTCTTTCGCTACTCCTAGACATGAGCCGTCTACGCC
TGGCCTGTGAACAAAACGTTGGCAGGGGGGCTGCTGTAGGCACGTTAACT
CTCCCCTCACCTCCCCCCAGCGAAAATGGTCCAATGTCAGCAATCCGGCG
TTGTCTCGCTCCATCGGAGTATTGTTCGGCGCTGGGCGGTTTTTTGCTAT
TGTCGGCGGTTGTGTGTGTTTCCGGTGGCCTCGACGTCACATTTTGTTTC
TTTCAACCCAGGGACATGCAGCTGCGGGTGCGGTGTGTTTGGAGTGCTTC
TCCGGCAGTAGTCGCGGGCGATACGCTATTGTAGTGAGGGTGTGGACTGG
GTGGTGGAATACTCACGTGGTGCTTTTTTTGGACGCAGCTATGACCAATA
CATTCGAGAGTAGAAAAGTCGATCATGCTGTACAGGCACGACATATCAAG
GTATACCGGTATTGGGTACATGCATTTTTGGATTGTTATAGTCTATACAC
TTGTCGGATGCCACGAAGTGAAATAGTATTTCAATCTCATGATAACGAAG
CGAATGAGTGTCACACAATCTCCCCAACGCCCCGCCACCCTCCTGATCTC
TCTCCCCCCCCGCATCTCCTCAGCTTTGTCTTGAAGCTGGAAGCCAAGAA
GGAGAAGCACAACACGGTCCACGGGTCTGGCTCGACATGACGTCATTGGA
TTTTGGACCAAAATTACTCAGTTCAACAAAGTCGGTTTTTTGTGCCATGT
TGTGTGCTGGCCGTTTTTCATACTGCCAACGCACAACTTAGAATGGTTTG
CACGTAGCTTTGTTGTTTTTGCGAGGAAGGCTGGGGGAACAGTAATTGCG
CCGCCTGGATTGGGAAACAGGCATTTCACGAAGGGTATGGTGATGAATTT
TCTCTCCCACTGCTGTCCCCCCCAAGTTCTCGCGCCAAGTTTTGCTTTTT
TCGTGTAAGGGGAGGGGGCGGGCGGCGTTGAAGGCTTTTGGTGTCTCGAG
TTCACAACAGTCGCCGCGTTTTGGTGTTTCAATCCGTCCGAGCTTGCTTC
TGTGATGCGTGATGGATGTACAATAGAAATGTTGTGTGATGTTTGGTACA
CTACGGCGTTTCCCTTTTTGTGTTCGCCCTCGCCCAAAGAGCGGTTTTGT
CCATACCAGTCTGGGTCATTGCTGCTGTATTTTCGTCCAACAATGCTGTA
AGAACGCCGCTTCTTCTGTCTTCTTGCACCTTGCACGAAATAAGGGTGGG
TGAGGGCGGCCTCTGCTGTGGCCGGTTCCAACCTTCCGGTACCGTTGAAT
CCAGAGTGTTGTCTCCATGCCCAATATCCATGCCATGTGCAGCTATCATC
CCAGCGAAACCGCACCATCTGAGTGTGTGTGAAGCTCCACCACGGGTGGT
TGGCGCACATAATTATCCTCACCGCGCAACGTGAAATGGACGAAGATGTC
CTGATTGCATAGGATTTGCGTACTCGCAGTGGTGGAAAAATTGAGATGGT
TCAACTTGAAAGTTCCTTGTCATACTTTCTTGGCGAACTTCTTTTTCTCG
TGCCGCCAACGATGGGATGGGTGTGTGTGTGTGTGTGTGTGTGTTTTCGC
TTTTCGTAGCCTGCCTCCTCCTCTTCAAGACAAATGCTGTAGCTAATATT
GTAGGTTACCATCCGGGGTCACACAGGAG
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Coding sequence (CDS) from alignment at C-linearis_contig103:491801..495229-

>mRNA_C-linearis_contig103.854.1 ID=mRNA_C-linearis_contig103.854.1|Name=mRNA_C-linearis_contig103.854.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at C-linearis_contig103:491801..495229- (Chordaria linearis ClinC8C monoicous)
ATGAGGTTCGGCGCTTTGGCGTGGGTGATCGTCTGCTGCCAAGCTGCGGT
GACCCTGATTGGCGGCGATGCCTTCGTGATTTCCAAAAGATGAGGTTCGG
CGCTTTGGCGTGGGTGATCGTCTGCTGCCAAGCTGCGGTGACCCTGATTG
GCGGCGATGCCTTCGTGATTTCCAAAAGTTTTATGCGACGGGCGGCCGCG
TTGTCGGAGAGCCGAGGGGACACAATACACGCCGCCACGGCGGATCAGCT
GGAGCGGATTGTGGAAGGGCCCGTCGTAGATCTCAGGGGGGGCAAGACAA
CAGGGTCAAAAAAGTTTTATGCGACGGGCGGCCGCGTTGTCGGAGAGCCG
AGGGGACACAATACACGCCGCCACGGCGGATCAGCTGGAGCGGATTGTGG
AAGGGCCCGTCGTAGATCTCAGGGGGGGCAAGACAACAGGGTCAAAAAAG
GGGTCGTCTGGAAAGGGCAGTAAGTCGTCGTCGTCAAAAGGAAAGAGCTC
CAAGCTGTCCAAGTCCAAGAAGGAGCCCAAGAAGCCGTCCTTCTTAGCCA
CCATCAAGGCGTTCTTCAAGTCGCTCATCGACCCACAGGGTCGTCTGGAA
AGGGCAGTAAGTCGTCGTCGTCAAAAGGAAAGAGCTCCAAGCTGTCCAAG
TCCAAGAAGGAGCCCAAGAAGCCGTCCTTCTTAGCCACCATCAAGGCGTT
CTTCAAGTCGCTCATCGACCCACACTTTGTCTTGAAGCTGGAAGCCAAGA
AGGAGAAGCACAACACGGTCCACGGGTCTGGCTCGACATGACTTTGTCTT
GAAGCTGGAAGCCAAGAAGGAGAAGCACAACACGGTCCACGGGTCTGGCT
CGACATGA
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