mRNA_C-linearis_contig103.851.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig103.851.1
Unique NamemRNA_C-linearis_contig103.851.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig103.851.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 7.690e-44
Identity = 117/230 (50.87%), Postives = 141/230 (61.30%), Query Frame = 1 
Query:   25 EDVALNDWRLDVSGVQVVVADASSVLGAASASSSVGKAEGPTPTPAS---DTAIIEGFDLNVQIQTATDRTTNGLVGVRLQASLPRLSCNIHSSAYLLLTRLLKNELSRPAAAAPSTGTQPPASNXXXXXXXXXXXXXXXXS--RGAVASRPFPISTSSPAGGGSGVSTAAAGTVASVEPGHVPVGVSPPRVPLSGRPRGIKAVLSSELEPVTEIPGEG--DTDDDGLGG 693
            ED+A +DW LDV+GVQVVVADASS LG AS+ +      GP+   A+   DTAI+E  DLNV+++TATD +TNGL+GVR++A+LPRLSCN+HSSAYLLLTRLLKNEL RP  AA      PP S                 +  RGAVASR FP S +                  S+ PG  P G          RPR IKAVL+SELEPVTE+PGEG  +  DDG+GG
Sbjct:  974 EDIAQDDWLLDVTGVQVVVADASSFLGPASSDN------GPSANKAALSNDTAIVEEVDLNVKVRTATDLSTNGLIGVRVEANLPRLSCNVHSSAYLLLTRLLKNELERPTTAA-GADRFPPESPLVSSSREEERMTRVPQTGTRGAVASRLFPASATP-----------------SLSPGS-PGGTQ--------RPRLIKAVLASELEPVTEVPGEGPLEDSDDGVGG 1170
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BLAST of mRNA_C-linearis_contig103.851.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 2.940e-29
Identity = 68/103 (66.02%), Postives = 85/103 (82.52%), Query Frame = 1 
Query:   25 EDVALNDWRLDVSGVQVVVADASSVLGAASASSSVGKAEGPTPTPASDTAIIEGFDLNVQIQTATDRTTNGLVGVRLQASLPRLSCNIHSSAYLLLTRLLKNE 333
            EDVA +DW LDV+GVQVVVADASS LGAAS+ +    A+      ++DTAI+E FDLNV+++TATD +TN L+G+R +A+LPRLSCN+HSSAYLLLTRLLKNE
Sbjct:   74 EDVAQDDWLLDVTGVQVVVADASSFLGAASSDNRQSAAKAAL---SNDTAIVEEFDLNVKVRTATDLSTNCLIGIRAEANLPRLSCNVHSSAYLLLTRLLKNE 173
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMF5_ECTSI7.690e-4450.87FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JYL2_9PHAE2.940e-2966.02FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:477249..479240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.9
Seed ortholog evalue1.4e-39
Seed eggNOG ortholog2880.D7FMF5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size693
Cds size693
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.851.1prot_C-linearis_contig103.851.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig103 477249..479240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927379.3323715-CDS-C-linearis_contig103:477248..4776101622927379.3323715-CDS-C-linearis_contig103:477248..477610Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 477249..477610 -
1690879665.4880903-CDS-C-linearis_contig103:477248..4776101690879665.4880903-CDS-C-linearis_contig103:477248..477610Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 477249..477610 -
1622927379.3431985-CDS-C-linearis_contig103:478019..4781461622927379.3431985-CDS-C-linearis_contig103:478019..478146Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 478020..478146 -
1690879665.5016048-CDS-C-linearis_contig103:478019..4781461690879665.5016048-CDS-C-linearis_contig103:478019..478146Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 478020..478146 -
1622927379.4124646-CDS-C-linearis_contig103:478633..4787651622927379.4124646-CDS-C-linearis_contig103:478633..478765Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 478634..478765 -
1690879665.511946-CDS-C-linearis_contig103:478633..4787651690879665.511946-CDS-C-linearis_contig103:478633..478765Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 478634..478765 -
1622927379.4207838-CDS-C-linearis_contig103:479168..4792401622927379.4207838-CDS-C-linearis_contig103:479168..479240Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 479169..479240 -
1690879665.523262-CDS-C-linearis_contig103:479168..4792401690879665.523262-CDS-C-linearis_contig103:479168..479240Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 479169..479240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig103.851.1

>prot_C-linearis_contig103.851.1 ID=prot_C-linearis_contig103.851.1|Name=mRNA_C-linearis_contig103.851.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=231bp
MVAAEGGSEDVALNDWRLDVSGVQVVVADASSVLGAASASSSVGKAEGPT
PTPASDTAIIEGFDLNVQIQTATDRTTNGLVGVRLQASLPRLSCNIHSSA
YLLLTRLLKNELSRPAAAAPSTGTQPPASNSAAEATAQAPPPGGGSSRGA
VASRPFPISTSSPAGGGSGVSTAAAGTVASVEPGHVPVGVSPPRVPLSGR
PRGIKAVLSSELEPVTEIPGEGDTDDDGLGG
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mRNA from alignment at C-linearis_contig103:477249..479240-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig103.851.1 ID=mRNA_C-linearis_contig103.851.1|Name=mRNA_C-linearis_contig103.851.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1992bp|location=Sequence derived from alignment at C-linearis_contig103:477249..479240- (Chordaria linearis ClinC8C monoicous)
ATGGTGGCAGCGGAGGGGGGCTCAGAGGATGTGGCTCTGAACGACTGGCG
GCTGGACGTTTCCGGGGTGCAGGTGCGGCGGAATACGTGGGCATGCGGCG
GAGTTAGACCTTGCGCTGGAATGGATCTTCTCTATTTCTAAGTGTTTTCC
GTCGGCACCACAGTAGTGCCGAGATCACCTCTGGAGTCTGGGACGGTGAG
GGAGGGGGGGGTTACACGGTGGTTCTACAACAGCGCCCCCTGGAACGACC
TTTTCACAGGCCGGGCGTATACCGCTGACTTTCGGTAGAAAAGTTCGTAC
TTCGAAGTATTAGTTTTGAAAAGAAAATCAGGAAATCAAAGACGGAACCC
CCCCACATGGGAGACGGGGCTCTGTGGGCTATAAACGGTATTCCATGCCG
TGATGTAAGAAATCTTTTGTTCGCTGCCTCTGCGCTGCGGCGCGTGCTTT
CTAATTGGCCCATTTTTCTTGGAAGGTGGTGGTGGCCGACGCTTCTTCGG
TATTAGGAGCAGCGTCGGCGTCGTCCTCTGTCGGCAAGGCGGAGGGGCCC
ACCCCCACGCCCGCTTCTGACACCGCCATCATCGAGGGCTTCGACCTAAA
CGTTCAGGTAAGCCCATGACGGGTTTTGACCCAAAACGTCCGGCTCACTG
CGTAATCAACCATACCCCTCCCGTGATTGAGGAGGTCCACCCGTCGTCAT
ATTTTCGATGACAGGTGGGTCATAGCGGCGGCCTTCTGTCCACTGCAAGT
TATTTTGATGGCCGTGACGGCGTTGGAAGAGGGAAGAGCCTGCCTGCCAA
GGAGATGTCCTTACGGGGTTCGAGGGAGTCAGGCCAATATCTGGCAGCGA
GGGAAAAAAATCAGTTTTTGGGAATGGCAACCATTCATCATTCATGCATG
GCAGGAGTGGGTGATTTTGATGGTTACAACAATGGTGGCGGTGGTAGAGA
TGAGACAGCAGTAGTGATACTGATGATGATGAATATGATGATGATGATGA
TGATGATGATGATTATGAGTACTCCGTGTCTTGCGTCCGCCCGTGTTTTG
GGGTTGTCGTTTCGTCGTTGGTGTCTCGTTTTTATTTTTTGCAGATCCAA
ACTGCCACGGACCGCACGACGAACGGCCTCGTTGGCGTCCGGCTACAGGC
CAGCCTCCCGCGCCTCAGCTGCAACATCCACAGCTCCGCGTATCTGCTAC
TGACCAGGCTGCTCAAGAACGGTGCGCGGTTGAAGCTTGTCGAATCTGTT
GTTTGTGTGTTTGGTTGTTGTTGTGGGTATTGTGGGTATTGTGGGTGTTG
TTGGTGTTGCTGCTGGCGTTCTTTCTGCGCTACAGTAGCGGTTTCGGCGG
GATTGTTCGTTGTTGCTGTCACTGTCACCAGCTTAGTTCAATGCCGAGCT
GGTTTAGTTCAATACCGGGATGGTTTGGTTCTGGTTTCGAACAAGCTGCT
TACTGCTGTTTCTAGGAGGATGCCCCGTGTCGCGCCCGGATGGGCTTTCG
AACCGAACCGGTTTGCTCTCTCAGTACACTAGCTCTGTACCAACTACCCT
CCACCGTATCAACGATTGAATCACCTAACCTCTCCACCCCCACCGCGACG
TCAACCCCCCCGGTCATCCGCCAACCTCAGAGCTCTCCCGCCCAGCGGCA
GCAGCGCCTTCCACGGGCACACAGCCTCCGGCGTCCAACTCCGCCGCTGA
AGCGACCGCACAAGCACCACCACCAGGAGGAGGCAGCAGCCGAGGGGCTG
TCGCCTCTCGACCATTCCCGATCTCAACTTCTTCCCCCGCTGGGGGCGGT
TCCGGTGTTTCGACAGCTGCCGCGGGGACCGTAGCTTCCGTGGAGCCGGG
GCATGTCCCCGTTGGGGTGTCGCCGCCCCGTGTGCCGTTGTCCGGGCGGC
CCCGCGGAATCAAGGCTGTCCTCTCGTCGGAACTAGAGCCCGTTACCGAA
ATACCAGGAGAGGGCGACACGGACGACGATGGCCTTGGAGGG
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Coding sequence (CDS) from alignment at C-linearis_contig103:477249..479240-

>mRNA_C-linearis_contig103.851.1 ID=mRNA_C-linearis_contig103.851.1|Name=mRNA_C-linearis_contig103.851.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at C-linearis_contig103:477249..479240- (Chordaria linearis ClinC8C monoicous)
ATGGTGGCAGCGGAGGGGGGCTCAGAGGATGTGGCTCTGAACGACTGGCG
GCTGGACGTTTCCGGGGTGCAGATGGTGGCAGCGGAGGGGGGCTCAGAGG
ATGTGGCTCTGAACGACTGGCGGCTGGACGTTTCCGGGGTGCAGGTGGTG
GTGGCCGACGCTTCTTCGGTATTAGGAGCAGCGTCGGCGTCGTCCTCTGT
CGGCAAGGCGGAGGGGCCCACCCCCACGCCCGCTTCTGACACCGCCATCA
TCGAGGGCTTCGACCTAAACGTTCAGGTGGTGGTGGCCGACGCTTCTTCG
GTATTAGGAGCAGCGTCGGCGTCGTCCTCTGTCGGCAAGGCGGAGGGGCC
CACCCCCACGCCCGCTTCTGACACCGCCATCATCGAGGGCTTCGACCTAA
ACGTTCAGATCCAAACTGCCACGGACCGCACGACGAACGGCCTCGTTGGC
GTCCGGCTACAGGCCAGCCTCCCGCGCCTCAGCTGCAACATCCACAGCTC
CGCGTATCTGCTACTGACCAGGCTGCTCAAGAACGATCCAAACTGCCACG
GACCGCACGACGAACGGCCTCGTTGGCGTCCGGCTACAGGCCAGCCTCCC
GCGCCTCAGCTGCAACATCCACAGCTCCGCGTATCTGCTACTGACCAGGC
TGCTCAAGAACGAGCTCTCCCGCCCAGCGGCAGCAGCGCCTTCCACGGGC
ACACAGCCTCCGGCGTCCAACTCCGCCGCTGAAGCGACCGCACAAGCACC
ACCACCAGGAGGAGGCAGCAGCCGAGGGGCTGTCGCCTCTCGACCATTCC
CGATCTCAACTTCTTCCCCCGCTGGGGGCGGTTCCGGTGTTTCGACAGCT
GCCGCGGGGACCGTAGCTTCCGTGGAGCCGGGGCATGTCCCCGTTGGGGT
GTCGCCGCCCCGTGTGCCGTTGTCCGGGCGGCCCCGCGGAATCAAGGCTG
TCCTCTCGTCGGAACTAGAGCCCGTTACCGAAATACCAGGAGAGGGCGAC
ACGGACGACGATGGCCTTGGAGGGAGCTCTCCCGCCCAGCGGCAGCAGCG
CCTTCCACGGGCACACAGCCTCCGGCGTCCAACTCCGCCGCTGAAGCGAC
CGCACAAGCACCACCACCAGGAGGAGGCAGCAGCCGAGGGGCTGTCGCCT
CTCGACCATTCCCGATCTCAACTTCTTCCCCCGCTGGGGGCGGTTCCGGT
GTTTCGACAGCTGCCGCGGGGACCGTAGCTTCCGTGGAGCCGGGGCATGT
CCCCGTTGGGGTGTCGCCGCCCCGTGTGCCGTTGTCCGGGCGGCCCCGCG
GAATCAAGGCTGTCCTCTCGTCGGAACTAGAGCCCGTTACCGAAATACCA
GGAGAGGGCGACACGGACGACGATGGCCTTGGAGGG
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