prot_C-linearis_contig103.848.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig103.848.1
Unique Nameprot_C-linearis_contig103.848.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length478
Homology
BLAST of mRNA_C-linearis_contig103.848.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 1.060e-34
Identity = 154/480 (32.08%), Postives = 192/480 (40.00%), Query Frame = 0
Query:    4 GGDGAAVVVRADLSLRVTTAYFLDGHWAAKLGYSGGSGGSXXGGSRSGEFLQPGAVLPTAGGMGRHAGDSSRSSLVSCRLTRVEAFSRPPDVRVRDADDLGRGYRCRRPRKRDSASAVSLSFPPRSPGPIQGRPTPPGAEQEQDQDNAQDARKRLPATAAAWRTVVEPASGTVAYAFSPXXXXXXXXXSGLSPAKEASDKPYVAD--EDLAGGAAEGGLRRLRLEGWSSVRAVVRPSDVRSVARTLSSTTPAASPASSRSARSRGLESRAPAPVTAEAAFAVIPGLSVVAEGAGLTVTLEDDSGTHFVPPXXXXXRGSGPRCREGVDSASLSPASLRSXXXXXXXXXXSVRGHGGEEMEAEQLFPTPTSRELSTPWTTATAAGGGLGDEARNLQPEDLEFAGLPGEKPAGAAVSGGGMAPAVIGGDGVQGLGL-VGSSAGGKISRRL-GAICGFPAQPVVEVSLGEWSVSFSR--GHGGG 477
            GGDGAAVVVR D+S+R+T+A+FLDGHWAAKL  SG             E  QP    P  G  GR   DS R++L+SCRL +VEAFSRP    + + +D  R +R  RP + ++A+                                     R P T+                                         P VA+  +   G       RR    G     A   P              PA +P                     +  F  I  LSV A GAGLTV LEDDSGTHFVPP         PR ++  D A  +P SL+S          +   + GEE+E E++ PTP+SR  S PWTT TA+G  +    R        FA                   A    DG + +   VG  A  K+S  L  A CGFP QPVVE S+G W VSFSR  G GGG
Sbjct: 2367 GGDGAAVVVRVDMSMRMTSAFFLDGHWAAKLAASGT------------EAFQPTVPFPIPGDTGRRDDDSDRTTLLSCRLAKVEAFSRPFRGGLYEHEDPSRVHRSHRPAREENAA-------------------------------------RSPTTS----------------------------------------MPSVANRPQGCLGHCRNHCCRRASRSGPEHEEATPSP--------------PATTP---------------------QRRFPGIADLSVRASGAGLTVRLEDDSGTHFVPPPQPL-----PRQQQAEDYA-FAP-SLQSISSSCSSRRNT---YDGEELEEERVLPTPSSRIGSVPWTTTTASGPRVEHSPR--------FA-------------------AGFSRDGKEDMSTTVGGLASDKMSSALLSATCGFPGQPVVEASVGNWLVSFSRVVGRGGG 2685          
BLAST of mRNA_C-linearis_contig103.848.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.630e-5
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 0
Query:    4 GGDGAAVVVRADLSLRVTTAYFLDGHWAAKLGYSG 38
            G DGAAVVVR D+S+R+TTA+FLDGHWAAKL  +G
Sbjct: 1690 GRDGAAVVVRVDMSMRMTTAFFLDGHWAAKLAANG 1724          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.848.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMF5_ECTSI1.060e-3432.08FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JYL2_9PHAE3.630e-574.29FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:467674..469445 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.848.1mRNA_C-linearis_contig103.848.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig103 467672..469445 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig103.848.1 ID=prot_C-linearis_contig103.848.1|Name=mRNA_C-linearis_contig103.848.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=478bp
EELGGDGAAVVVRADLSLRVTTAYFLDGHWAAKLGYSGGSGGSSGGGSRS
GEFLQPGAVLPTAGGMGRHAGDSSRSSLVSCRLTRVEAFSRPPDVRVRDA
DDLGRGYRCRRPRKRDSASAVSLSFPPRSPGPIQGRPTPPGAEQEQDQDN
AQDARKRLPATAAAWRTVVEPASGTVAYAFSPPPAPPPPPPSGLSPAKEA
SDKPYVADEDLAGGAAEGGLRRLRLEGWSSVRAVVRPSDVRSVARTLSST
TPAASPASSRSARSRGLESRAPAPVTAEAAFAVIPGLSVVAEGAGLTVTL
EDDSGTHFVPPPPRRRRGSGPRCREGVDSASLSPASLRSRSRSRSGSGSS
VRGHGGEEMEAEQLFPTPTSRELSTPWTTATAAGGGLGDEARNLQPEDLE
FAGLPGEKPAGAAVSGGGMAPAVIGGDGVQGLGLVGSSAGGKISRRLGAI
CGFPAQPVVEVSLGEWSVSFSRGHGGGG
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