Homology
BLAST of mRNA_C-linearis_contig103.848.1 vs. uniprot
Match:
D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)
HSP 1 Score: 149 bits (376), Expect = 1.060e-34
Identity = 154/480 (32.08%), Postives = 192/480 (40.00%), Query Frame = 1
Query: 10 GGDGAAVVVRADLSLRVTTAYFLDGHWAAKLGYSGGSGGSXXGGSRSGEFLQPGAVLPTAGGMGRHAGDSSRSSLVSCRLTRVEAFSRPPDVRVRDADDLGRGYRCRRPRKRDSASAVSLSFPPRSPGPIQGRPTPPGAEQEQDQDNAQDARKRLPATAAAWRTVVEPASGTVAYAFSPXXXXXXXXXSGLSPAKEASDKPYVAD--EDLAGGAAEGGLRRLRLEGWSSVRAVVRPSDVRSVARTLSSTTPAASPASSRSARSRGLESRAPAPVTAEAAFAVIPGLSVVAEGAGLTVTLEDDSGTHFVPPXXXXXRGSGPRCREGVDSASLSPASLRSXXXXXXXXXXSVRGHGGEEMEAEQLFPTPTSRELSTPWTTATAAGGGLGDEARNLQPEDLEFAGLPGEKPAGAAVSGGGMAPAVIGGDGVQGLGL-VGSSAGGKISRRL-GAICGFPAQPVVEVSLGEWSVSFSR--GHGGG 1431
GGDGAAVVVR D+S+R+T+A+FLDGHWAAKL SG E QP P G GR DS R++L+SCRL +VEAFSRP + + +D R +R RP + ++A+ R P T+ P VA+ + G RR G A P PA +P + F I LSV A GAGLTV LEDDSGTHFVPP PR ++ D A +P SL+S + + GEE+E E++ PTP+SR S PWTT TA+G + R FA A DG + + VG A K+S L A CGFP QPVVE S+G W VSFSR G GGG
Sbjct: 2367 GGDGAAVVVRVDMSMRMTSAFFLDGHWAAKLAASGT------------EAFQPTVPFPIPGDTGRRDDDSDRTTLLSCRLAKVEAFSRPFRGGLYEHEDPSRVHRSHRPAREENAA-------------------------------------RSPTTS----------------------------------------MPSVANRPQGCLGHCRNHCCRRASRSGPEHEEATPSP--------------PATTP---------------------QRRFPGIADLSVRASGAGLTVRLEDDSGTHFVPPPQPL-----PRQQQAEDYA-FAP-SLQSISSSCSSRRNT---YDGEELEEERVLPTPSSRIGSVPWTTTTASGPRVEHSPR--------FA-------------------AGFSRDGKEDMSTTVGGLASDKMSSALLSATCGFPGQPVVEASVGNWLVSFSRVVGRGGG 2685
BLAST of mRNA_C-linearis_contig103.848.1 vs. uniprot
Match:
A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE)
HSP 1 Score: 58.2 bits (139), Expect = 3.630e-5
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 1
Query: 10 GGDGAAVVVRADLSLRVTTAYFLDGHWAAKLGYSG 114
G DGAAVVVR D+S+R+TTA+FLDGHWAAKL +G
Sbjct: 1690 GRDGAAVVVRVDMSMRMTTAFFLDGHWAAKLAANG 1724
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.848.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.06e-34 / Id = 32.08 Expect = 3.63e-5 / Id = 74.29 Sequence D7FMF5_ECTSI A0A6H5JYL2_9PHAE
Match Name E-value Identity Description
D7FMF5_ECTSI 1.060e-34 32.08 FYVE-type domain-containing protein n=1 Tax=Ectoca... [more] A0A6H5JYL2_9PHAE 3.630e-5 74.29 FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 151.0 Seed ortholog evalue 1.4e-33 Seed eggNOG ortholog 2880.D7FMF5 Hectar predicted targeting category other localisation EggNOG free text desc. regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization EggNOG OGs COG5043@1,KOG1809@2759 COG Functional cat. U Best tax level Eukaryota Best eggNOG OG NA|NA|NA Exons 2 Model size 1438 Cds size 1434 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927379.1593528-CDS-C-linearis_contig103:467673..468704 1622927379.1593528-CDS-C-linearis_contig103:467673..468704 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 467674..468704 - 1690879665.332683-CDS-C-linearis_contig103:467673..468704 1690879665.332683-CDS-C-linearis_contig103:467673..468704 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 467674..468704 - 1622927379.1708915-CDS-C-linearis_contig103:469042..469445 1622927379.1708915-CDS-C-linearis_contig103:469042..469445 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 469043..469445 - 1690879665.3503332-CDS-C-linearis_contig103:469042..469445 1690879665.3503332-CDS-C-linearis_contig103:469042..469445 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 469043..469445 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.848.1
>prot_C-linearis_contig103.848.1 ID=prot_C-linearis_contig103.848.1|Name=mRNA_C-linearis_contig103.848.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=478bp
EELGGDGAAVVVRADLSLRVTTAYFLDGHWAAKLGYSGGSGGSSGGGSRS back to top mRNA from alignment at C-linearis_contig103:467672..469445-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig103.848.1 ID=mRNA_C-linearis_contig103.848.1|Name=mRNA_C-linearis_contig103.848.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1774bp|location=Sequence derived from alignment at C-linearis_contig103:467672..469445- (Chordaria linearis ClinC8C monoicous)GAAGAGCTTGGGGGAGATGGAGCAGCGGTAGTGGTAAGGGCGGACTTGTC
CCTGAGAGTGACGACCGCTTATTTTCTGGACGGGCACTGGGCGGCGAAGC
TCGGATACAGCGGCGGCAGCGGCGGCAGCAGCGGCGGCGGCAGTAGAAGC
GGCGAGTTCCTCCAACCCGGTGCTGTGCTCCCGACTGCCGGGGGCATGGG
ACGGCACGCTGGAGACTCTTCGAGATCATCCCTCGTATCTTGTAGGCTGA
CGAGGGTTGAGGCATTCTCGAGGCCGCCGGACGTTCGGGTTCGCGACGCG
GACGACTTAGGACGCGGGTACCGGTGTCGGCGACCAAGGAAACGAGACTC
GGCAAGCGCGGTGTCGTTGAGCTTCCCTCCTCGTTCGCCCGGCCCGATAC
AAG GCGAGGAGCCGGTCGCTCTCTTTGTTCGTTTCACCTCGCGTTGTTCA
TACCTCCGTCTCCCTCCCTCCTTCTGTCTTCTGTCTCCCGGTTCGCTTTC
GCCTAGTCCCGGACCGTCTGACCCCAGTTTTTTTTGGTTGTGGGGCACTT
TCGATGTTTCCTTGAAGCAGTCATGACACACAAAGCCCACCGTCTGTCGC
TCAACCCATGGTCGCTCCCTTTCCCTCTCCCCCTTCCTCTCTCTCTCTCT
CTCTCGCTCTCTCTCTCTCCGGTATTTGTTGGCTCTGCCTGGTATTTGTT
GGCTCTGCCGTCCGCGTGTCTTGATGCGTACGATCACCCAGGCCGCCCTA
CCCCCCCCGGAGCGGAGCAGGAGCAAGACCAAGACAACGCGCAGGACGCG
CGCAAGCGCCTCCCGGCGACGGCGGCGGCCTGGCGCACGGTCGTTGAACC
AGCCTCCGGGACGGTAGCGTACGCGTTTTCGCCGCCGCCGGCTCCACCGC
CGCCGCCGCCGTCTGGCTTATCGCCGGCGAAGGAAGCCTCCGACAAGCCG
TACGTCGCCGACGAAGACCTCGCCGGGGGCGCGGCAGAAGGGGGGCTCCG
GCGGCTGCGCTTGGAGGGGTGGTCGTCCGTACGGGCGGTCGTGCGACCCT
CGGACGTTCGTTCGGTTGCTCGAACCTTATCTTCCACGACGCCCGCCGCT
AGCCCAGCAAGCAGCCGGAGTGCCAGGAGCCGGGGGTTGGAGTCCCGGGC
ACCCGCTCCCGTAACCGCTGAGGCGGCGTTTGCCGTCATCCCGGGTTTGA
GCGTGGTGGCGGAGGGCGCGGGGTTGACGGTGACCCTGGAGGATGATTCG
GGGACGCACTTTGTTCCACCGCCGCCCCGCCGGCGGCGAGGGTCAGGGCC
GCGGTGTCGGGAGGGGGTAGACTCGGCTTCGTTGTCACCGGCTTCTCTTC
GAAGCCGCAGCCGTAGCCGCAGCGGAAGCGGCAGCAGCGTTAGAGGACAC
GGGGGGGAAGAGATGGAAGCGGAGCAGCTCTTTCCTACGCCCACGTCGCG
GGAGCTGTCAACCCCGTGGACAACCGCCACAGCAGCAGGGGGGGGTCTAG
GAGATGAAGCCAGAAACCTCCAACCAGAGGACCTGGAGTTTGCGGGGCTT
CCCGGAGAGAAACCTGCTGGGGCGGCGGTGAGCGGTGGCGGGATGGCGCC
TGCTGTCATCGGCGGGGATGGTGTGCAAGGATTGGGGTTGGTGGGTTCGT
CGGCCGGGGGCAAGATTTCTCGACGTTTGGGCGCGATCTGCGGCTTCCCA
GCACAGCCCGTGGTTGAGGTGTCTCTCGGCGAGTGGAGTGTGAGCTTCTC
TCGGGGCCACGGCGGCGGCGGC back to top Coding sequence (CDS) from alignment at C-linearis_contig103:467672..469445-
>mRNA_C-linearis_contig103.848.1 ID=mRNA_C-linearis_contig103.848.1|Name=mRNA_C-linearis_contig103.848.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2868bp|location=Sequence derived from alignment at C-linearis_contig103:467672..469445- (Chordaria linearis ClinC8C monoicous) back to top