mRNA_C-linearis_contig103.847.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig103.847.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE) HSP 1 Score: 1129 bits (2919), Expect = 0.000e+0 Identity = 789/1673 (47.16%), Postives = 940/1673 (56.19%), Query Frame = 1
Query: 52 ANSGERRCSTVAVDLERPIAANWNPRTLVALWAVRAALSRAATGDG------GAYASEESGCCGSEEGGSRRETAAQAPAGVRSIGAASVPACSTEVRVAARRGLEMTLNKEWEGRQLLAMSAASLDLAVEATSGGDATKNNSADTQSAVVWTGRVEELKATDPRGSNLLYSTLVG-PLPXXXXXXXXXXXXXXXXXGRQRSAAVAPVALSFRYAKEK------GGGVGNPTGVSGVDLPAVSVP--AAAAGSGVVAGGCEKCGPWESSALSLSFTELQVVYFQPIWLEVIDFAWDGVLGTAVWGGSAESDGAAAAAPXXXXXXXXVPIARGGDAPTVPAAAAGQXXXXXGDGLRSTSRISVTLSAPTIVLPGGSLTDPRHLALRPKSVRFDTWTGGAGDTSAPPRLEQCSPAGPVARHMAVEAIETDIDLGYFRGSSSTAAAGPGRAEQE----LHPLLREPTDVTVTVKTISPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGSPVDELGGPPDSDXXXXXXXXXXXXASLTPENTPAFRGEECGTGGGXXXXXXXXXXXXXXXXXGVDAAAGADAGGPQEKTMQVRVGVPRMLRLSLPTSDARAALSGCVNGNVLAAGFHGEVSENFPLRAVPLDEDEEEGGCDSTTGAVERRGGARGQEEGNVEEEDGIEGEGEXXXXXXGAVVGSPKKRSGGARGGEKEPGSRSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSSALGSRGSGGAEADGSSLECAVCADPFDELLARHECAWCGGTVCRKCMHTQVLAANDRGTSKTTSAETTTVGAADANDGDGSALLPALVCDACAARNFPESSVHPAGEVRYRYGDDGPVTAVDVALEIPGIQITFGERRGTSSTETGSNEDTHDQDHXKAQEQEQEG--------MAVHGGGLELTYKRSARRRGGLEAAIGTVSLVDLSKGAAFSRLISPA-PAAVSGDARPPQVVLSYHFSPNTEAQVQVREVMFRCQQVMVNHLEAIVAPSTIHKLSTLA--SPPXXXXVHGQGAGDGKVSSPACPRGLQGDPRASSPAEGHGAADG-------------AAAAVTAMHDLATLQLAAEG----------TLGGEHGRPPQQPLTLKVTLLDPVLMLPQDDGDPDSKALFLRGLVMANYVRSGGGDIGKD-------GPAAEARETSLEIIRLESQIGRMFGGSGRGQDVTGVSTSLGGLGAGAGAIDPVTLSLHYSEVERPLHPMVKDVKCQVEEVVCQLTYQDMALFNAVLSGWSSAMMPQEDPATATA-----------------------------------HEDTDDALQRPAGLGLLSSPR-AKDADSPATPGTAAAPVSLRGAAALELDDYDDDCXXXXXGDLFEDGQPRVQQTGRFYDVVFETAQLGLVLLRQNGVAVVEKVSTFNGVRGRAGGPFPGDELVEVAGMPTSQLSYNGVVDRICAGPRPVTLRFRRALYRCWWGREYTLDLSNWDGHRLGGVLLVGGGAGDQALVGSTDGYRPQKP-LPGAPSLRPRPGALIASIAGTPVSHLSLSAVTAFLDELTSETXXXXXXXXXASPFYDDGYGRIAGGGSXXXXXXXXXLAGGWTQAMLPKSAAARGRAEGR-----------------RSRPRRQRHQLLP 4728
A+SGE +VAV+L P+ ANWNP TLVALW VR+AL R+A G G +EE+ G + + A Q R GA+ P CSTE++VAAR+GLE+ NK+ EGRQL+ +SAASL L VEA+SGG AT +S VVW GR+++L A DPR SNLLYSTLVG P P +PV+L+FRY+KEK G V +P +P ++P A A G VAG PWESS+LSLSF+ELQVVYFQP+WLEVIDF W+GVLG AVWGGSA S+ A P A G P GLRS S+I VTLSAPT+VLPG SLTDPRHLALRPK RF+TWTGGA D+SAPPRLE+CSP GPVARHMAVEA ETDI LG S + G + L+ LL+E DV V VKT+SP G+ V A + E TP G C + G D AG+ G QEKTM+VRV +PR+L++SL T DARAAL+GC+ N+LAAGFHGEVSENFPL A D+D D GA G E+ + D I+ E E G G R GG G + ++ G S +A+GSRG G L C +C D FDELLARHECAWCGGTVCRKCMHTQVL +D GTS T + D +LP+L+CD CAAR FPE+SV+PAG+VRYRYGDDGPVTAVDVALEI IQ+ F ++S G+ E+ D + E G ++V G GLELTY+RSARR GGLEA++ VSL+DLS G AFSR++SPA P VSG+ RPPQVV+SYHFSP TEAQVQV MVNHLE + PS IHKL LA +PP ++G G + SP P G +P EG G +G AAA MHDLA LQL EG T+ GE G P + PLTLK TLL+PVL+LPQDD DPD ALFL+GL++ANYVRS D G A EAR+TSLEIIRLESQ+GRMFGGSGR G ST GGLG GAGA DPVTLSLHYSEVERPLHPMVKD+KCQVEEV CQLTYQDM+LFNAVLSGWSS ++ Q TA A HED D AL+ LG+ P+ A D+ L GA+AL+L+D E+G ++Q GRFY+VVFETAQLG+VLLRQNGVAVVE+VS++NGV GRA GPFPGDEL EVAGMPTS LSY+GVVDRI A PRP++LRFRRAL+R WWGREYTLDLS+WDGHRL G+LLVGGGAGDQA+VGS DG+RP+K L G P+LRPR GAL+ S+AG PVSHL++SAVT+ L+++ SE P + R GG +AGGWT+ +L + RPRRQ+HQLLP
Sbjct: 2135 ASSGEHCRVSVAVELGGPVTANWNPCTLVALWGVRSALLRSAAGVGRDPDLDDVTPAEEADPGGGDRDPGKATDAGQKMDSRRGTGASPTPTCSTEIQVAARKGLEVMFNKKKEGRQLIGVSAASLALTVEASSGGRATD------KSTVVWDGRLDDLTARDPRASNLLYSTLVGRPSPPRPTAQQPE----------------SPVSLTFRYSKEKEDESAEGPFVADP-------IPPAALPQGATAPAEGRVAG------PWESSSLSLSFSELQVVYFQPLWLEVIDFLWEGVLGAAVWGGSAVSEKEA---------EQGAPAATGRGDP----------------GLRSLSQIQVTLSAPTVVLPG-SLTDPRHLALRPKKFRFNTWTGGADDSSAPPRLEECSPGGPVARHMAVEAGETDIGLGVCYPRSPLPQSPVGAVQHWATGLLYSLLQETIDVKVAVKTVSPPPSSDGATGIVGSDCGDRDPPREVGSRSSSRIGSGGTGV----------TPEVEVRSTRAGAKVIEEETPGDEG--CNSDGTED-----------------DGGAGSIEEGVQEKTMEVRVELPRLLQISL-TPDARAALAGCLGANILAAGFHGEVSENFPLVASKQDDDAATSNFDGA--------GAAGVEQ----DMDEIDPEREARGTTRGG--GEKFHREGG---GTEPRVDKAVGGVGGYPLPYSPRAVRKHQQRYPSPPQSPSGTAVGSRGGDGVSPP---LACPLCTDSFDELLARHECAWCGGTVCRKCMHTQVLIYDDDGTSNAPGGNT--------GESDAPTVLPSLICDNCAARVFPETSVNPAGQVRYRYGDDGPVTAVDVALEIRRIQVDF--LPSSASLPWGAGEEEEDGNEGFPAEHRSRGTGRPTPGGISVLGDGLELTYRRSARRMGGLEASVDAVSLLDLSPGTAFSRILSPAAPIPVSGEMRPPQVVISYHFSPKTEAQVQV----------MVNHLETVAVPSAIHKLRVLAKRTPPPPTPMYGWKPGGERDPSPVGPPNSGG---LGTPGEGVGTTEGSVEETRAATGGLGAAAEAECMHDLAALQLTQEGVTPPPPIISDTIRGEDGAP-KTPLTLKATLLNPVLILPQDDKDPDCNALFLQGLIIANYVRSPRNDTAFQQHSNSARGAAVEARDTSLEIIRLESQLGRMFGGSGR---APGASTP-GGLGGGAGAFDPVTLSLHYSEVERPLHPMVKDLKCQVEEVECQLTYQDMSLFNAVLSGWSSGLLSQTVDETADAVTGDTTAAAVVDAAVSPLAAAATSPFVRNSSSKNGHEDVD-ALR----LGIGMPPQHANDSADAXXXXXXXXXXXLMGASALDLEDE-------------EEGGEQIQD-GRFYEVVFETAQLGIVLLRQNGVAVVEEVSSYNGVGGRAAGPFPGDELTEVAGMPTSCLSYDGVVDRIRASPRPISLRFRRALFRSWWGREYTLDLSSWDGHRLDGILLVGGGAGDQAVVGSVDGFRPRKRRLKGVPTLRPRAGALVVSVAGIPVSHLTVSAVTSLLNDIASE------------PSRRSPHARGVAGGERKM------VAGGWTETVLANXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQRPRRQQHQLLP 3631
BLAST of mRNA_C-linearis_contig103.847.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI) HSP 1 Score: 797 bits (2059), Expect = 1.960e-243 Identity = 580/1161 (49.96%), Postives = 670/1161 (57.71%), Query Frame = 1
Query: 310 CSTEVRVAARRGLEMTLNKEWEGRQLLAMSAASLDLAVEATSGGDATKNNSADTQSAVVWTGRVEELKATDPRGSNLLYSTLVG-PLPXXXXXXXXXXXXXXXXXGRQRSAAVAPVALSFRYAKEKGGGVGNPTGVSGVDLPAVSVPAAAA-GSGVVAGGCEKCGPWESSALSLSFTELQVVYFQPIWLEVIDFAWDGVLGTAVWGGSAESD-----GAAAAAPXXXXXXXXVPIARGGDAPTVPAAAAGQXXXXXGD-GLRSTSRISVTLSAPTIVLPGGSLTDPRHLALRPKSVRFDTWTGGAGDTSAPPRLEQCSPAGPVARHMAVEAIETDIDLG--YFRGS--SSTAAAGPGRAEQELHPLLREPTDVTVTVKTISPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGS-PVDELGGPPDSDXXXXXXXXXXXXASLTPENTPAFRGEECGTGGGXXXXXXXXXXXXXXXXXGVDAAAGADAGGPQEKTMQVRVGVPRMLRLSLPTSDARAALSGCVNGNVLAAGFHGEVSENFPLRAVPLDEDEEEGGCDSTTGAVERRGGARGQEEGNVEEE-DGIEGEGEXXXXXXGAVVGSPKKRSGGARGGEKEPGSRSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSSALGSRGSGGAEADGSSLECAVCADPFDELLARHECAWCGGTVCRKCMHTQVLAANDRGTSKTTSAETTTVGAADANDGDGSALLPALVCDACAARNFPESSVHPAGEVRYRYGDDGPVTAVDVALEIPGIQITFGERRGTSSTETGSNEDTHDQDHXKAQEQEQEG--------MAVHGGGLELTYKRSARRRGGLEAAIGTVSLVDLSKGAAFSRLISPA-PAAVSGDARPPQVVLSYHFSPNTEAQVQVREVMFRCQQVMVNHLEAIVAPSTIHKLSTLA--SPPXXXXVHGQGAGDGKVSSPACPRGLQGDPRASSPAEGHGAAD------------GAAAAVTAMHDLATLQLAAEGTLGGEHGRPPQQPLTLKVTLLDPVLMLPQDDGDPDSKALFLRGLVMANYVRSGGGDIGKD-------GPAAEARETSLEIIRLESQIGRMFGGSGRGQDVTGVSTSLGGLGAGAGAIDPVTLSLHYSEVERPLHPMVKDVKCQ 3660
CSTE+ VAARRGLE+ NKE EGRQL+A+SAASL L VEA+SGG AT +S VVW GR+++L A DPR SNLLYSTLVG P P +PV+L+FRY+KEKG G V+ PA + A A G VAG PWESS+LSLSF+ELQVVYFQP+WLEVIDF W+GVLG AVWGGSA + GA AA P AR + AAA G GD GLRS S+I VTLSAPT+VLPG SLTDPRHLALRPK+ RF TWTGGA D+SAPPRLE+CSP GPVARHMAVEA ETDI LG Y RG S A RA + LL+EP DV V VKT+SP G G+ P ++G A + E T G C + G XXXXXXXXXX G QEKTM+VRV +PR+L++SL T DARAAL+GC+ N+LAAGFHGEVSENFPL A D+D S G + G VE+E D I+ E E G G +KR RGG + R+ G S +A+GSRG G L C +C D FDELLARHECAWCGGTVCRKC+HTQVL +D GTS T +GD +LP+L+CD CAAR FPE+SV PAG+VRYRYGDDGPVTAVDVALEIP IQ+ F ++S G+ E+ D + G M+V G GLELTY+RSARR GGLE ++G V L+DLS G AFSR++SPA P VSG+ RPPQVV+SYHFSP TEAQVQV MVNHLE I PS IHKL LA +PP ++G GD + SP P G +P EG G GAAA MHDLA LQL +G GE G P + PLTLK TLL+PVL+LPQDD DPD ALFL+GL++ANYVRS D G AAEAR+TSLEIIRLESQ+GRMFGGSGR G ST GLGAGAGAIDPVTLSLHYSEVERPLHPMVKD+KCQ
Sbjct: 2906 CSTEIEVAARRGLEVMFNKEKEGRQLIALSAASLALTVEASSGGCATD------KSTVVWDGRLDDLTARDPRASNLLYSTLVGRPSPPRPTAQQPE----------------SPVSLTFRYSKEKGDESGEGPYVAYRIPPAALLQGATAPAEGRVAG------PWESSSLSLSFSELQVVYFQPLWLEVIDFLWEGVLGAAVWGGSAVPEEEAEQGAPAATDGSTPADRRTPGAREQER----AAADG------GDPGLRSLSQIQVTLSAPTVVLPG-SLTDPRHLALRPKTFRFSTWTGGADDSSAPPRLEECSPGGPVARHMAVEAGETDIGLGFCYPRGPRPQSPVGAVQHRATGLFYSLLQEPIDVKVAVKTVSPPPPSDGATGIAGSDCDDRDPPREVGRSSSSSSGGTGTTPAVQVG-------------LTSGGAKVVEEKTSGDEG--CNSDGTXXXXXXXXXXE-----------------GEQEKTMEVRVELPRLLQVSL-TPDARAALAGCLGANILAAGFHGEVSENFPLVASKDDDD----AATSIFGGADAAG---------VEQEMDEIDPEREVR----GTTRGGGEKRHH-ERGGTEPRVDRAGGEVGGYPLPYSPRAVRKHQRRHPSPPQSPSGTAVGSRGGDGVSPP---LACPLCTDSFDELLARHECAWCGGTVCRKCLHTQVLIYDDDGTSNAPGGNT--------GEGDAPIVLPSLICDNCAARVFPETSVSPAGQVRYRYGDDGPVTAVDVALEIPRIQVDF--LPSSASLPWGAGEEEEDSNEGFPAGHRSRGTGHPTPGGMSVLGDGLELTYRRSARRMGGLEGSVGAVLLLDLSPGTAFSRIVSPAAPVPVSGEMRPPQVVISYHFSPKTEAQVQV----------MVNHLETIAVPSAIHKLHVLAKPTPPPPTPMYGWKPGDERDPSPVGPPHSSG---LGTPGEGVGTERNVKETRAATGGLGAAAEAECMHDLAALQLTQQG---GEDGAP-KTPLTLKATLLNPVLILPQDDKDPDCNALFLQGLIIANYVRSPRNDTAFQQHSNSARGAAAEARDTSLEIIRLESQVGRMFGGSGR---APGASTPS-GLGAGAGAIDPVTLSLHYSEVERPLHPMVKDLKCQ 3942
BLAST of mRNA_C-linearis_contig103.847.1 vs. uniprot
Match: D7FHV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV4_ECTSI) HSP 1 Score: 159 bits (402), Expect = 2.970e-41 Identity = 84/140 (60.00%), Postives = 98/140 (70.00%), Query Frame = 1
Query: 3967 EDGQPRVQQTGRFYDVVFETAQLGLVLLRQNGVAVVEKVSTFNGVRGRAGGPFPGDELVEVAGMPTSQLSYNGVVDRICAGPRPVTLRFRRALYRCWWGREYTLDLSNWDGHRLGGVLLVGGGAGDQALVGSTDGYRPQK 4386
E+G ++Q GRFY+VVFETAQLG+VLLRQ VAGMPTS LSY+GVVDRI A P P++LRFRRAL++ WWGREYTLDLS WDGHRL G+LLVGGGAGDQA+VGS DG+RP+K
Sbjct: 42 EEGGEQIQD-GRFYEVVFETAQLGIVLLRQ------------------------------VAGMPTSCLSYDGVVDRIRASPCPISLRFRRALFKSWWGREYTLDLSYWDGHRLDGILLVGGGAGDQAVVGSVDGFRPRK 150
BLAST of mRNA_C-linearis_contig103.847.1 vs. uniprot
Match: A0A836C849_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C849_9STRA) HSP 1 Score: 138 bits (348), Expect = 7.890e-29 Identity = 181/690 (26.23%), Postives = 267/690 (38.70%), Query Frame = 1
Query: 2551 AGEVRYRYGDDGPVTAVDVALEIPGIQITFGERRGTSSTETGSNEDTHDQDHXKAQEQEQEGMAVHGGGLELTYKRSARRRGGLEAAIGTVSLVDLSKGAAFSRLISPAPAAVSGDARP------------PQVVLSYHFSPNTEAQVQVREVMFRCQQVMVNHLEAIVAPSTIHKLSTLASPPXXXXVHGQGAGDGKVSSPACPRGLQGDPRASSPAEGHGAADGAAAAVTAMHDLATLQLAAEGTL----GGEHGRPPQQPLTLKVTLLDPVLMLPQDDGDPDSKALFLRGLVMANYVRSGGGDIGKDGPAAEARETSLEII----------RLESQIGRMFGGSGRGQDVTGVSTSLGGLGAGAGAIDPVTLSLHYSEVERPLHPMVKDVKCQVEEVVCQLTYQDMALFNAVLSGWSSAMMPQEDPATATAHEDTDDALQRPAGLGLLSSPRAKDADSPATPGTAAAPVSLRGAAALELDDYDDDCXXXXXGDLFEDGQPRVQQTGRFYDVVFETAQLGLVLLRQNGVAVVEKVSTFNGVRGRAGGPFPGDELVEVAGMPTSQLSYNGVVDRICAGP---------------RPVTLRFRRALYRCWWGREYTLDLSNWDGHRLGGVLLVGGGAGDQALVGSTDGYRPQKPLPGAPSLR---PRPGALIASIAGTPVSHLSLSAVTA 4488
A +RYR+G DGP + L++P + + T S D + + E +A L+ +R+A R G LE ++ T L D G + P P S D PQ+ S HF+ Q+M+NH+EA++A + ++ + V +PA P G G G A MHDLA LQLA++ G PLT+KVTL +P L+L ++ DP + AL L+GL++ Y RS + +DG A +T L++ RLES I M G G G G G +DPVT+SL S + RPLHP V CQVE V Q +Y D+++ + VL GWS A+A A +Q PA G G A + + L + G G P V++ + A+ GL + + VE + G+R A +V+ + S L Y V+ + + P RP+ L FRRA YR E+ + ++ +G L G+ GG GDQ +V S+ YR + PR GA++ S+ G + L +A A
Sbjct: 2929 AAAIRYRFGSDGPSMPFSLDLQVPSATVQLCAKTAGPLAVTASETGGADPNGTPIAVLDVEKLA-------LSVQRAADRSGSLELSLRTFCLRDPRPGCVHPNIAIPKPELDSQDGEDSGXXXXXXXXXAPQLACSLHFNAQQSR-----------MQIMLNHMEAMIAFGALREMRAALA----------------VPAPAAP--------------GRGGPPGTTMAQPHMHDLAPLQLASDCDFVAGGGXXXXXXXALPLTVKVTLNNPRLLLLGEERDPHTHALVLQGLIIGRYTRSAA--LLEDGEVAVTSKTRLQVXXXXXXXXRVHRLESYIHAMGGD--------------GDTGTGVGILDPVTVSLDSSLMRRPLHPDEHHVTCQVEGVDAQFSYADLSVLSKVLRGWS---------ASAAAAGGATPEVQEPAAGG--------------DGGDAGLYRVIFASEKLGI-------TIARHG-----GLPVVEEVAEW------RAKDGLGPWPNDELVEVEGLEVA-GLRYEAA-------VVDQCAVTLSLLRYEAAVEALRSRPLXXXXXXXXXXXXXXRPLALTFRRATYRGPGFEEFVV--THTEGTGLEGIEACRGGLGDQLVVRSSRAYRSAQXXXXXXXXXXXAPRAGAVVWSVNGEACAELGAAAACA 3503 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.847.1 >prot_C-linearis_contig103.847.1 ID=prot_C-linearis_contig103.847.1|Name=mRNA_C-linearis_contig103.847.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1580bp ADADADADADADAASSSANSGERRCSTVAVDLERPIAANWNPRTLVALWAback to top mRNA from alignment at C-linearis_contig103:455988..467052- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.847.1 ID=mRNA_C-linearis_contig103.847.1|Name=mRNA_C-linearis_contig103.847.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=11065bp|location=Sequence derived from alignment at C-linearis_contig103:455988..467052- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:455988..467052- >mRNA_C-linearis_contig103.847.1 ID=mRNA_C-linearis_contig103.847.1|Name=mRNA_C-linearis_contig103.847.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=9480bp|location=Sequence derived from alignment at C-linearis_contig103:455988..467052- (Chordaria linearis ClinC8C monoicous)back to top |