prot_C-linearis_contig103.844.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig103.844.1
Unique Nameprot_C-linearis_contig103.844.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length183
Homology
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BLAST of mRNA_C-linearis_contig103.844.1 vs. uniprot
Match: D7FME6_ECTSI (Similar to mitochondrial import inner membrane translocase,TIM17/22/23-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME6_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 1.660e-71
Identity = 124/174 (71.26%), Postives = 137/174 (78.74%), Query Frame = 0 
Query:    1 MDGWNVDPAG-AQDIYAPDCASRAAEGFYVGALYGTVWGVVGRASSAPILPPTPTTGALKTLSAPNSSSPSPVSRPSGLGARGVSRHLRAFGSGAAGYGMAAASTGGLFGVFVGMVNAGTCACERFRGKKDWFNNTFGGAVAGGSVALLSRHTRSPQMIAAHVAGAAAITSIVA 173
            M+ WNV+P       YAPDC+SRAAEGFYVGALYG VWGV+GRA+ AP LP TP  G LK  S    + P+P     GL  RGVSR +RAFG GAAGYG+AAAST G+FGVFVGMVNAGTC CER RGKKDWFNN FGGA AG SVALLSRHTR+PQM+AAHVAGAAAITS+VA
Sbjct:    1 MEDWNVEPPEMTHKDYAPDCSSRAAEGFYVGALYGAVWGVIGRAAHAPTLPSTPAMGELKPPSG-LQAQPAP-----GLETRGVSRQVRAFGRGAAGYGIAAASTAGVFGVFVGMVNAGTCGCERLRGKKDWFNNAFGGAAAGLSVALLSRHTRTPQMLAAHVAGAAAITSVVA 168
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.844.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FME6_ECTSI1.660e-7171.26Similar to mitochondrial import inner membrane tra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF02466Tim17coord: 19..166
e-value: 6.2E-15
score: 55.5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 178..182
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..157
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 158..177
NoneNo IPR availableTMHMMTMhelixcoord: 131..148
NoneNo IPR availableTMHMMTMhelixcoord: 96..118
NoneNo IPR availableTMHMMTMhelixcoord: 158..180

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:423762..426831 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.844.1mRNA_C-linearis_contig103.844.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig103 421899..427718 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig103.844.1 ID=prot_C-linearis_contig103.844.1|Name=mRNA_C-linearis_contig103.844.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=183bp
MDGWNVDPAGAQDIYAPDCASRAAEGFYVGALYGTVWGVVGRASSAPILP
PTPTTGALKTLSAPNSSSPSPVSRPSGLGARGVSRHLRAFGSGAAGYGMA
AASTGGLFGVFVGMVNAGTCACERFRGKKDWFNNTFGGAVAGGSVALLSR
HTRSPQMIAAHVAGAAAITSIVAFATGSPVGS*
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