mRNA_C-linearis_contig103.844.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig103.844.1
Unique NamemRNA_C-linearis_contig103.844.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig103.844.1 vs. uniprot
Match: D7FME6_ECTSI (Similar to mitochondrial import inner membrane translocase,TIM17/22/23-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME6_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 1.160e-66
Identity = 124/174 (71.26%), Postives = 137/174 (78.74%), Query Frame = 3 
Query:  156 MDGWNVDPAG-AQDIYAPDCASRAAEGFYVGALYGTVWGVVGRASSAPILPPTPTTGALKTLSAPNSSSPSPVSRPSGLGARGVSRHLRAFGSGAAGYGMAAASTGGLFGVFVGMVNAGTCACERFRGKKDWFNNTFGGAVAGGSVALLSRHTRSPQMIAAHVAGAAAITSIVA 674
            M+ WNV+P       YAPDC+SRAAEGFYVGALYG VWGV+GRA+ AP LP TP  G LK  S    + P+P     GL  RGVSR +RAFG GAAGYG+AAAST G+FGVFVGMVNAGTC CER RGKKDWFNN FGGA AG SVALLSRHTR+PQM+AAHVAGAAAITS+VA
Sbjct:    1 MEDWNVEPPEMTHKDYAPDCSSRAAEGFYVGALYGAVWGVIGRAAHAPTLPSTPAMGELKPPSG-LQAQPAP-----GLETRGVSRQVRAFGRGAAGYGIAAASTAGVFGVFVGMVNAGTCGCERLRGKKDWFNNAFGGAAAGLSVALLSRHTRTPQMLAAHVAGAAAITSVVA 168
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FME6_ECTSI1.160e-6671.26Similar to mitochondrial import inner membrane tra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:421899..427718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1591
Cds size549
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927378.2816098-UTR-C-linearis_contig103:421898..4219511622927378.2816098-UTR-C-linearis_contig103:421898..421951Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 421899..421951 +
1690879664.581482-UTR-C-linearis_contig103:421898..4219511690879664.581482-UTR-C-linearis_contig103:421898..421951Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 421899..421951 +
1622927378.2991188-UTR-C-linearis_contig103:423659..4237611622927378.2991188-UTR-C-linearis_contig103:423659..423761Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 423660..423761 +
1690879664.5945866-UTR-C-linearis_contig103:423659..4237611690879664.5945866-UTR-C-linearis_contig103:423659..423761Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 423660..423761 +
1622927378.3545072-UTR-C-linearis_contig103:426831..4277181622927378.3545072-UTR-C-linearis_contig103:426831..427718Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 426832..427718 +
1690879664.6442657-UTR-C-linearis_contig103:426831..4277181690879664.6442657-UTR-C-linearis_contig103:426831..427718Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 426832..427718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927378.315107-CDS-C-linearis_contig103:423761..4238611622927378.315107-CDS-C-linearis_contig103:423761..423861Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 423762..423861 +
1690879664.605814-CDS-C-linearis_contig103:423761..4238611690879664.605814-CDS-C-linearis_contig103:423761..423861Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 423762..423861 +
1622927378.326029-CDS-C-linearis_contig103:424388..4244501622927378.326029-CDS-C-linearis_contig103:424388..424450Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 424389..424450 +
1690879664.614435-CDS-C-linearis_contig103:424388..4244501690879664.614435-CDS-C-linearis_contig103:424388..424450Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 424389..424450 +
1622927378.3356144-CDS-C-linearis_contig103:425685..4259031622927378.3356144-CDS-C-linearis_contig103:425685..425903Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 425686..425903 +
1690879664.6228669-CDS-C-linearis_contig103:425685..4259031690879664.6228669-CDS-C-linearis_contig103:425685..425903Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 425686..425903 +
1622927378.3461711-CDS-C-linearis_contig103:426662..4268311622927378.3461711-CDS-C-linearis_contig103:426662..426831Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 426663..426831 +
1690879664.6314461-CDS-C-linearis_contig103:426662..4268311690879664.6314461-CDS-C-linearis_contig103:426662..426831Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 426663..426831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.844.1prot_C-linearis_contig103.844.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig103 423762..426831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig103.844.1

>prot_C-linearis_contig103.844.1 ID=prot_C-linearis_contig103.844.1|Name=mRNA_C-linearis_contig103.844.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=183bp
MDGWNVDPAGAQDIYAPDCASRAAEGFYVGALYGTVWGVVGRASSAPILP
PTPTTGALKTLSAPNSSSPSPVSRPSGLGARGVSRHLRAFGSGAAGYGMA
AASTGGLFGVFVGMVNAGTCACERFRGKKDWFNNTFGGAVAGGSVALLSR
HTRSPQMIAAHVAGAAAITSIVAFATGSPVGS*
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mRNA from alignment at C-linearis_contig103:421899..427718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig103.844.1 ID=mRNA_C-linearis_contig103.844.1|Name=mRNA_C-linearis_contig103.844.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5820bp|location=Sequence derived from alignment at C-linearis_contig103:421899..427718+ (Chordaria linearis ClinC8C monoicous)
CCACGACGGCCACTGCTATGCGACACACACCCTGTTAACAGCTTCTGGGA
CAGGTGATTTGACGGGTTCGGTCGGGGGTGTCCTCGTGGTTGAGCGCTTG
GGTTGAAGTCGAAAAAAGGAAGGAGAGAGGAAGCCAGGTACATTTTTCGT
ACAGCAGTATACATATAAGGCGATTCCGAGGGCACATGTTGGAATGGATT
GTTATCGCTTGCATCACCTGTTACCTCGTGTGTTGCGTTGCTCCTGCGCT
TGGCAGTGCTACTGGCGCCGACTGGCGGTGTTAGTTACTCGGTTGGATTC
TGATGGTCTGTTTTTGCAGAAGACTGCCTGTAACCCCTGTCGCCCGTAAT
TAACAGAGTAGTGACAAGGGGTTTGAACTTGGCCCTCTGCCCGATTTGTC
GCACTTCGCCACCGCATCATGGATCATGGAGGCTTCGACGTTGCGGCGTG
CAGCATTGCGCCGCACGAAGCTTACAGCATGCGTTTTTGAAAGAAAAAAC
TGTTGGCTGTCGGCACAACGCTAGGGTTGACAATGACCCCCTTAACCATT
GAAGCTGTCTAACGATGAACGAGGGGAGGTATGCGCTGAAAAATTGAAAG
GATGGTCGCGAAAAGAGATGTGAAGTACAATAGATACAGAGGCATTTTCT
CCACCCGGGGTTTGCCGGGAATTATCCTCCCTTCCACGGGCACTCACAAC
AACGTCGATAACACGCCCTACAGCCTTCCCCACTCCTACCCAAGCACTGA
ACTGGACAGAATAGCTCCCGCTGTATCGCTGGGGTGGCTTGTGGGTAGGT
TTTCTGTAACACAGGGGTGTGCACCGCTGTCGGAGCTATACCAGATATCC
CGGTGCCGTTTTGGATACACTTTTACTTTTCGGCGGGTGCCTATTTCTAT
TCTACAATAGACATTTGCGCTCAATCTCACGGTCAGAACTACTCCTCCTT
ACCTATCGTCAGCAGCGTCGAAGTTCCCTAACTTGCTTCAGGCCCGGACG
CCGAGCTAGCACCCTCCAAGGGCAGCAACTCTCTAATCAAGTGTAATACA
ATACCCCCGCCCCACCAACCCACGAAGAAACAGCGAGCCCCCAACGGGAG
GACAAAAAAGGGGGCTGTTTTGGATACACTTTTCGGCGGCGCCTATTTCT
ACTCTGCAATAGACATTTGCGCTCAATCTCACGGTCAGAACTACTCCTCC
TAGCCTATCGTCAGCAGCGTCAAAGTCCCCTAACTTGATTAAGGCCCGGA
CGCCGAGCTAGCACCCTCCAAGGGATCGTTTGCGGGCAGCAACTCTGTAA
CTGAGTGTAATACAATATCCCCCCCTAACCCCCAGCAAAAAACAGCGAGC
CCCCAACGGGATAAAAAATGGCGGCGGAACCTCAGCCAACAACACTGCCT
ACAGCAGTACAGCAGAGCAAGGATCGCAACAAGTCAAAAACATCCATGCT
GGTGGGTGAAGAACGAAGTCGTGGAAGATAAACGGTTTGGCATATTGGAA
AAAATTGTAACCTGTGGTCGAGACCAGCAGCATGCGGCTTGGGTGCTCCG
GGGTAAGCTCTCGGCAATCATTGCCGCCTTCCATTGGGAATCTTCAGCAC
CCTTCGATCCCTGTGGCAACAAGAAGAAACTACGCAAGGCATATTGCGTT
AGCCTCCCTTGATGGTCTGATTTTCGTGAGGGGGCAAGAGTTTCGACTCA
GCCCAGGGTGCACAGATAATCACTGGAAAAATTCCATCCGTTTGCTCTGT
CCGCGCCGCAGGGGCGAGGCACGAGGAAGCGAATCGCTGCTTACCCTGCT
TGGAGGAATACCACCACGAACAACAACAACAACAGCAGCAGCAGCAGCAG
CAGCGGCAGCAGCATGGATGGTTGGAACGTGGACCCAGCCGGGGCCCAAG
ACATTTACGCCCCGGACTGCGCGTCGAGAGCGGCGGAGGGCTTCTACGTG
GGGGCCTTATACGGTGCGTTCGTTTCTCGTGTGTTGTCGAAAATGTGCGC
ACCCGCAAACATAACTACAGTTTCGGATCGTGGATTTTGTATCTACCTCT
TGTAGGCTCGGTCAGTCAGTGATGGTGTGTCTACAACAGCCCCCCTGGGA
CGATGTTTTGGCGGGTTGGACGCAGGCCCATGACGATAAGTATGTAGAAA
CAGCTCCAAACATCGAGCAGTTGACGAAAGTCGGGGAGAAGCTAGCTACC
CTTGAGCCTGGGGCTTTGACCCCTCGGTGGCAACGGCGGTGGAAATAACC
TGCCGCGTGTTCCTGCGTGGCGAACGCGAGAAACAGCCTAGGGTCCCCAT
GCGGTATGCAAGTCCTTTCGCCACCTTGGCCTCCAAGATGCTGTGTATCC
CAAAGCCTTACAATCGTTTGGTGATGGTTTTCTGATTTTGTTGGTGGAAA
ACCTCCACCTCGTCCAACCCCCGTGTTCACCGCTGGTTCAAAATTTGCTC
AGAAGATAAATATGCGGTTTTCTCTGCTTTTTTTAAACAGGGACGGTGTG
GGGAGTGGTCGGCCGCGCTTCTTCTGCTCCCATTTTGCCGCCAACACCAA
CGGTATGTTACCACGTTGCAAAGTACATAGCGTAGCCAACTAGTTTGTGT
TCTGTGCTTTGTCTGGGGCGGGGGAGGTGCGGGTACGGCGCTTCCGCTGT
GACGCTCGTGTCGGCGGTTGTCTTGCTGTCCGCCGGACAAGAGTAACGAA
ACAAGGGAGACCGGAGTGACGAAACAAGGAAGACCGGGAAAGGATTGCAC
GGAAGGAGTGAAAGTCACGCCACGGGGGGTTCGCAGGGTCCTTGCGGTCG
TACTAATCGTAGTCGTTCTCCTGCGTTGATACTTGCTCCCCTTTCCTTCG
TTTGCGGGTGCGAACTCGCATCCTCATCAACTACTCTCGGCCTCCTGTCT
ACGGAGAGGCGAGTGGGCCGCATACAGAACCACCGTACCGCTTCAAGAGG
TTTCATCCCCAAGACCCCCCCCTCGATGTACCGTGCCTATCCTGTAAAAA
AAAAAATGAGAGTGCACCCTTCTTGCTCCCTCCCTCCCTCCCACTCTATC
CGCGAAGCCCCTTTTCTTTCCAAACCTAACCAACCACATGTAAGTGCCAC
CATAGAATGACCGGTTAGAGTGACGTCAGATGACCGGCCAGAACCTATGT
CCTGGCCGGGGTAGGACAGATAGAGTCAGAACCGTTCCTGGGATTCCTCG
GAGGGACAACGGAGGAACAACGTTCCTCGGATGAATGCGGGGTATCTTTG
CCCATGCAAACACAGCCCAGCTGGCTCGCCCACACACGCACAACCCGGTG
TTGTCCTCCGCACCAAATCACCTTGGCAGAAGAGACTTGAACGCCTACAG
AAGCTGTACGGGGCTCATCCCCCTCATGCACATACCATATGAACGTATAC
GAAGTATACCTGTATCGTTTCTTTACATTTGCCCCCTCTTCTTCACTTGT
ATGAATTTATGGCTGCCATCGACTGCTGCATACATAGATCGTGGCGAAAA
GCCTGCATCATGTCTTCACACTTTCCCCCTTCTCTGGAAAAACCCGATTT
ATTTGCTGTTTGGCTTTGCGAGAGTTGCGCAAGGGAGGAAGGTGGTGGAT
ATTTCTTTTCTTTTGTTCAGGTGTTATTTCTACTGGGCCGGACCATAATA
CATCGCTGTACATGGGATTGCTAGATAACTCACCGCATAGTGTTCGGCGT
CTCTACGTTGAAAGGGGTTCCTTCTTTGACTCCACTCGACTTCCTCTTAA
AAAGCCCACACCACCCCTTTCGCCTCGCCGAACGAAGACCGGGGCGTTGA
AAACGTTGTCGGCCCCCAACTCTTCTTCTCCTTCTCCTGTTTCGAGACCC
TCCGGGCTTGGCGCTCGAGGGGTTTCGCGGCATCTCCGGGCGTTCGGCAG
CGGTGCCGCGGGGTACGGCATGGCGGCGGCGTCCACCGGCGGTCTGTTCG
GGGTTTTCGTGGGCATGGTGAACGCCGGGACGTGCGCTTGCGAGCGATTT
CGAGGGTGGGTTTGGCGTTTTGCTATCTTTTTTTTCTTTTTCTTTCTACG
GTATACAGTATCAGTAAACCTCGGCGGTCGACGTGCAACCCGTGATGAGA
TCGTTCCGGGGGGACTTTTTGTAGACACGCAAGCCCCCTACCTCACCGCC
CCAGACTACAGACGTGGTACAACGTCCGCAAACCACACTTGTACGTGTTT
TCGGGCGTTGATTTGTTTGGTGTTGTTGTTGTGGAAAGTGTGGGTTTGAT
ACGCATCGGAAGTTTTAATTGCTGCCCACGTGGGCGTGCAGGGTAAGAAA
GGTGCATTGAAGTAGAAGTGAAGAAAGTGACCCTGAAAGCATCTGGAATG
TGAACATGGTGGCTGATGAGGTGCGCGAATGGGCAGGAAGTGGTACCTCA
CCTCACCATGATACGCAGTACGAGGTAGCTCTGGTCACATCACATCACGT
TCTGCGCGGTTTTCAAAAGCTTTTCAATTGCACCATGTGCATTGCGGCAC
GTGGCCGACTAGCGTTGGGCGACCCTATGCGGCCCTGCGCACAACGGGTG
GCAATACACGGTTTGATGCTTTCAGACTAGTTTCATTAAAATAACACATG
AACGTCGATGCCCGAAAATGAAGCTCTGCGCTTAATATTCAACCGTATGT
ATAATAATAGTGGTATTGTACGGGGAAGTAAAAACAAGCCCCCAGGCAAA
TACGAGTATGCGATATACTTATCTGGTGACGCCATTACGTGTTGTTGCAT
TCGCGCTCCGCCAGGAAGAAGGACTGGTTCAACAACACGTTCGGGGGCGC
CGTCGCCGGAGGTTCCGTGGCGCTGCTCTCCAGACATACCCGTAGCCCCC
AAATGATCGCTGCCCACGTGGCGGGAGCAGCCGCGATAACGTCGATCGTG
GCTTTCGCCACGGGCTCCCCAGTTGGAAGCTAGCTTTGTTGGAAACTCGG
CTCTACAATAGAACCTCTCGGCCGTTTTTGTTGTTGTATTTCGTTGTTGT
TTCTCACTCCCGCCGACAATGTCGGAGGGTATGTCTGCTCTGCCATGTAT
CCGTTTTTTTCCGTGTCTTTATTGTTGGGGTTGTTATATGTTTGAAGACC
GCGCGGAGACGTGTGCAGGTTAGAACAGCACGGATTTTTCGGATTTTTCG
ACTCACCGAATATACGAGTTTGTAAATGTCGTTGTCGATGATGCAAGGCA
GTATCCTGACAGGCAGCTCTTCGCACGGTATGTCGGAACCAGCTCCGTAA
GGGGGCTACAAGTATCACCCGTGCGTAACCCCCGTGGGTTCAAACCTGTC
GCTACTGGTCTCTTGCTTAGGGGTTAGGGGCTACCGTTTTGTAACTGCTA
CGAATCGTCTCGCTTTCGTGTTCAACGTGCTCTGTCGTCTGTTCGTAGAT
TTCATAGATTTCGATTTTCACGTTCTACGAATGAGGCGAAAAAGTACGTG
GAACAAGTAAGCAAGACGATTGCGTGTTGATTGCACATAGGTATGCTACC
GGATGGTTCGTTTTTTTATTTTTTGTATTTTAACATTTACTTCCAGAGTT
CGCAGGGGCGCCTTGCCGCGCGGGGCATCTTGCCAGAGCATCTGAACCGT
GGTCACACAGAAGGTTCTTCTCCCTGAGGCCCCCGCCCACCTTCTCCGGT
GCTTGCCTGGTATTTTTTAACACGAGAGAGTTTCAGCCGTCTCTCCCTCA
AGTGTACACACCAACTAACTAAGCGCTTTCCACCGACAGGAACGAAAGCG
AGAGAAAAAAACTCGCTTTGTGTGAGATCAAGTCGCTTACGCCGGGATGG
TTCGGAGAAGGGACAAATTA
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Coding sequence (CDS) from alignment at C-linearis_contig103:421899..427718+

>mRNA_C-linearis_contig103.844.1 ID=mRNA_C-linearis_contig103.844.1|Name=mRNA_C-linearis_contig103.844.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at C-linearis_contig103:421899..427718+ (Chordaria linearis ClinC8C monoicous)
ATGGATGGTTGGAACGTGGACCCAGCCGGGGCCCAAGACATTTACGCCCC
GGACTGCGCGTCGAGAGCGGCGGAGGGCTTCTACGTGGGGGCCTTATACG
ATGGATGGTTGGAACGTGGACCCAGCCGGGGCCCAAGACATTTACGCCCC
GGACTGCGCGTCGAGAGCGGCGGAGGGCTTCTACGTGGGGGCCTTATACG
GGACGGTGTGGGGAGTGGTCGGCCGCGCTTCTTCTGCTCCCATTTTGCCG
CCAACACCAACGGGACGGTGTGGGGAGTGGTCGGCCGCGCTTCTTCTGCT
CCCATTTTGCCGCCAACACCAACGACCGGGGCGTTGAAAACGTTGTCGGC
CCCCAACTCTTCTTCTCCTTCTCCTGTTTCGAGACCCTCCGGGCTTGGCG
CTCGAGGGGTTTCGCGGCATCTCCGGGCGTTCGGCAGCGGTGCCGCGGGG
TACGGCATGGCGGCGGCGTCCACCGGCGGTCTGTTCGGGGTTTTCGTGGG
CATGGTGAACGCCGGGACGTGCGCTTGCGAGCGATTTCGAGGACCGGGGC
GTTGAAAACGTTGTCGGCCCCCAACTCTTCTTCTCCTTCTCCTGTTTCGA
GACCCTCCGGGCTTGGCGCTCGAGGGGTTTCGCGGCATCTCCGGGCGTTC
GGCAGCGGTGCCGCGGGGTACGGCATGGCGGCGGCGTCCACCGGCGGTCT
GTTCGGGGTTTTCGTGGGCATGGTGAACGCCGGGACGTGCGCTTGCGAGC
GATTTCGAGGGAAGAAGGACTGGTTCAACAACACGTTCGGGGGCGCCGTC
GCCGGAGGTTCCGTGGCGCTGCTCTCCAGACATACCCGTAGCCCCCAAAT
GATCGCTGCCCACGTGGCGGGAGCAGCCGCGATAACGTCGATCGTGGCTT
TCGCCACGGGCTCCCCAGTTGGAAGCTAGGAAGAAGGACTGGTTCAACAA
CACGTTCGGGGGCGCCGTCGCCGGAGGTTCCGTGGCGCTGCTCTCCAGAC
ATACCCGTAGCCCCCAAATGATCGCTGCCCACGTGGCGGGAGCAGCCGCG
ATAACGTCGATCGTGGCTTTCGCCACGGGCTCCCCAGTTGGAAGCTAG
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