prot_C-linearis_contig103.842.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig103.842.1
Unique Name	prot_C-linearis_contig103.842.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	1167

Homology

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BLAST of mRNA_C-linearis_contig103.842.1 vs. uniprot
Match: A0A6H5JI88_9PHAE (Myb-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI88_9PHAE)

HSP 1 Score: 815 bits (2105), Expect = 4.830e-277
Identity = 631/949 (66.49%), Postives = 694/949 (73.13%), Query Frame = 0

Query:  233 LGVHHRPHGSFPSRSISPQLPPPPPKPAHERLWDGVQGPLWRFRSSSRTPVILAPPSAVLEAARVGGGAGPCRDGEPRSRPGSEETRRSSLMGLGPIDAVLVLDEHLSLPSPSTTXXXXXXXXXXXXXXXXXXXXXXXXYSRAALSSALKSLLALPLLARGESPVVGP----ARGSGXXXXXXXXXXXXXXXXXXXXXXXXIVTVVRFLAEGTVEEALE-EGGAGASMGSLEGRPLGEVIFGPSFAKQKGTPVLPATPT---------PAAXXXXXXXXXXXXXXXXXDTKATGNKKGEEAEKAASLDVVGAEASGAAAAEAALARARCAVEGKKFAVRREAKD----EASAAVPPVAGTKRKALASRDGDA-GGPGAHWSESLPPLRRMRMSARSPVGVEEILMEEIVQMDPNDFDTGRGSFDTDETRVFARLAQEGHPIPPPLLSYAVDATLAATPGHSFTERVRDLHLLGIAPDPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQELGCSLSYVDRLMVPPNRNKKLKKAMSPRESSRRDGERSGSGR-TKASVEEWTKTEDRLLVGAVQQFGENWVLVAFSINKYPILRGRMRCGSQCKARYSNLVALGTAQRLPRTGAARPLSVRLREDYRGAAILPDQPPALTLQMRSRVPLVPIAGAAARQAFSARFTALVKAVQKKPAPPPIPGCDNPEAQIQPPHNSHAKAAEDAGAAGALAPTQITDRLRAALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGHGIQPQAPLPAVP---PAQQXXXXXXXXXXXXXXXXX---------VSAGGVPAGTVPTSPAQSLAANLSSQVRALLSRAPSTAGGSSGSTNQVLEALRLHPQLTSKIQATIHRTDTTDAQKVEALAAMLSAVR 1149
            L  HH P GSFPSRS SPQ P  PPKPAHERLW GVQGPLWRFR S RTPV+LAPPSA+LEA  V GG+G C +GE + RP     R+ SL GLGPIDAVL+ DE   +   + TXXXXXXXX                   AAL++AL+SLL LPL AR  S         A G G                        +VTVVR++ +GT+EE LE EG  G S  SL GRPLGEV+FGP+++ +     + A  T         PAAXXXXXXXXXXXXXXXXX                         A+GA      +A  RC++EGK +  + EA      E + AV  ++GTKRKA      D  G  G HWSE  PPLRR      SPV VE+IL+EE+VQM+P+DFDT RG FDTDETRVFARLA+ GHP+PPPLLSYAVDATLAATPG SFTERVRDLHLLGI+P+PFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQ+LGCSLSYVDRL  P NR+KKLKKA+SPRESSRR+GE  G+GR  K SVEEWTK ED LLV AVQQFGENWVLVAFSINK PILRGRMR GSQCKAR++NLVALG A +  + GA RPLSVRL   YRG AILPDQP ALT+ MRSRVPLVP+AGAAARQAF+ARF ALVKAV+KKP PPPIPGCDNPEA IQP HNSHAKAAE+AGAAGALAPTQITDR RAAL+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       AGHGIQPQAPLP      P QQ     XXXXXXXXXXXX         ++AGGV AG  PTSPAQ+LAANLSSQVRALLSRAP+  G + GSTNQVLEALRLHPQLT+KIQATIHRTDTTDAQKVEALA+MLSAVR
Sbjct:   75 LSAHHNPLGSFPSRSPSPQAPATPPKPAHERLWSGVQGPLWRFRCSPRTPVLLAPPSAILEA--VAGGSGLCPNGE-QPRPDGSSVRKGSLCGLGPIDAVLIFDEGPPITRATATXXXXXXXX-------------------AALAAALQSLLTLPLCARRSSAPRAIRSMLATGGGAADENGRVDRGGVATAAGRAEGERVVTVVRYVVDGTIEETLEGEGDKGIS--SLGGRPLGEVLFGPTYSDRGSAKPVSAGATSEAASAPEIPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPPAAGAEVGVEGIA-VRCSLEGKTYLKQGEAASASASEGTEAVS-LSGTKRKAGGGGGADMLGADGKHWSEGAPPLRRT--CPWSPVRVEDILVEEMVQMNPDDFDTERGCFDTDETRVFARLAEGGHPVPPPLLSYAVDATLAATPGRSFTERVRDLHLLGISPEPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQDLGCSLSYVDRL--PSNRSKKLKKALSPRESSRREGEHPGAGRRNKTSVEEWTKMEDSLLVSAVQQFGENWVLVAFSINKCPILRGRMRSGSQCKARHANLVALGAAGQRSQRGA-RPLSVRLPPTYRGTAILPDQPAALTMAMRSRVPLVPVAGAAARQAFAARFAALVKAVKKKPIPPPIPGCDNPEALIQPAHNSHAKAAEEAGAAGALAPTQITDRQRAALIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------AGHGIQPQAPLPVSAGQQPLQQGGSVGXXXXXXXXXXXXXXXAPAGVALAAGGV-AGAAPTSPAQNLAANLSSQVRALLSRAPNMPGAAGGSTNQVLEALRLHPQLTAKIQATIHRTDTTDAQKVEALASMLSAVR 984

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BLAST of mRNA_C-linearis_contig103.842.1 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI)

HSP 1 Score: 709 bits (1831), Expect = 1.730e-224
Identity = 505/866 (58.31%), Postives = 560/866 (64.67%), Query Frame = 0

Query:   81 GSTVTAGQAEARKEEFWRGHVKDLELTASDRLEKYSGKLVELGRAVGRLAAAGKKVVVLGALPDALALVHQYLTETDVPHECWAAHEEMFPP----------DDGTTVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEKAEAKAEAEAKSNGTMASLLGVHHRPHGSFPSRSISPQLPPPPPKPAHERLWDGVQGPLWRFRSSSRTPVILAPPSAVLEAARVGGGAGPCRDGEPRSRPGSEETRRSSLMGLGPIDAVLVLDEHLSLPSPSTTXXXXXXXXXXXXXXXXXXXXXXXXYSRAALSSALKSLLALPLLARGESPVVG----PARGSGXXXXXXXXXXXXXXXXXXXXXXXX-IVTVVRFLAEGTVEEALE-EGGAGASMGSLEGRPLGEVIFGPSFAKQKGTPVLPATPTPAAXXXXXXXXXXXXXXXXXDTKATGNKKGEEAEKAASLDVVGAEASGAAAAEAALARARCAVEGKKFAVRREAKD----EASAAVPPVAGTKRKALASRDGDA-------GGPGAHWSESLPPLRRMRMSARSPVGVEEILMEEIVQMDPNDFDTGRGSFDTDETRVFARLAQEGHPIPPPLLSYAVDATLAATPGHSFTERVRDLHLLGIAPDPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQELGCSLSYVDRLMVPPNRNKKLKKAMSPRESSRRDGERSGSGR-TKASVEEWTKTEDRLLVGAVQQFGENWVLVAFSINKYPILRGRMRCGSQCKARYSNLVALGTA-QRLPRTGAARPLSVRLREDYRGAAILPDQPPALTLQMRSRVPLVPIAGAAARQAFSARFTALVKAVQKKPAPPPIPGCDNPEAQ 917
            G+ ++AGQAEA+KEEFWRGHVKDLEL+  +RLEKYSGKL +LGRAV RLAAAGKKV+VLGALPDA  LVHQYL ETDVPHECWA + EMFP           D GT  PAXXXXXXXXXXXXXXXXXXXXXXXXXXX         A        +  +A L   HH P GSFPSRS  PQ P  PPKPAHERLW GVQGPLWRFR S RTPV+LAPPSA+LEA  V GG+G C +GE + RP     RR SL+GLGPIDAVL+ DE   + + +T XXXXXXXXXX              +SRAAL++AL+SLL LP  AR  S        PA G G           XXXXXXXXXXXX  +VTVVR++A GT+EE LE EG  G S     G  +                                                                                  RC++EGK F  + EA      E + AV  ++GTKRKA               G  G HWSE  PPLRR      SPVGVE+IL+EE+VQM+P+DFDTGRG FDTDETRVFARLA  GHP+PPPLLSYAVDATLA TPG SFTERVRDLHLLGI+P+PFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQ+L CSLSYVDRL  P NRNKKLKKA+SPRESSRR+GE+ G+GR  K SVEEWTK ED LLV AVQQFGENWVLVAFSINK PILRGRMR GSQ KAR++NLVALG A QR PR   ARP SVRL   Y                    +PLVP+AGAAARQAFSARF ALVKAV+KKP PPPIPGCDNPE +
Sbjct: 1311 GALLSAGQAEAQKEEFWRGHVKDLELSVPERLEKYSGKLAKLGRAVARLAAAGKKVLVLGALPDARLLVHQYLVETDVPHECWAGNGEMFPNVAEEESTRGVDAGTAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXAALSVGPGVAAXXXXXXXSPALAPL-SAHHNPLGSFPSRSPFPQAPVTPPKPAHERLWSGVQGPLWRFRCSPRTPVLLAPPSAILEA--VAGGSGLCPNGE-QPRPDGSSVRRGSLLGLGPIDAVLIFDEGPPITTRTTAXXXXXXXXXX--------------WSRAALAAALQSLLTLPRCARRSSAPRAIRSMPATGGGAAADENGRVDGXXXXXXXXXXXXESVVTVVRYVANGTIEETLEGEGDKGISSLGAGGEGIA--------------------------------------------------------------------------------VRCSLEGKTFLKQGEAASASASEGTEAVS-LSGTKRKAADGXXXXGCSGVDMLGANGKHWSEGAPPLRRT--CPWSPVGVEDILVEEMVQMNPDDFDTGRGCFDTDETRVFARLADGGHPVPPPLLSYAVDATLATTPGRSFTERVRDLHLLGISPEPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQDLSCSLSYVDRL--PSNRNKKLKKALSPRESSRREGEQPGAGRRNKTSVEEWTKMEDTLLVSAVQQFGENWVLVAFSINKCPILRGRMRSGSQNKARHANLVALGAAGQRSPR--GARPKSVRLPPTY--------------------LPLVPVAGAAARQAFSARFAALVKAVKKKPIPPPIPGCDNPEVE 2051

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig103.842.1 vs. uniprot

BLAST of mRNA_C-linearis_contig103.842.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JI88_9PHAE	4.830e-277	66.49	Myb-like domain-containing protein n=1 Tax=Ectocar...	[more]
D7FME7_ECTSI	1.730e-224	58.31	Myb-like domain-containing protein n=1 Tax=Ectocar...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 944..978
None	No IPR available	GENE3D	1.10.10.60		coord: 767..827 e-value: 5.9E-9 score: 37.5
None	No IPR available	PANTHER	PTHR23202	WASP INTERACTING PROTEIN-RELATED	coord: 287..989
None	No IPR available	PANTHER	PTHR23202:SF27	VERPROLIN 1, ISOFORM G	coord: 287..989
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 774..830 e-value: 3.4E-4 score: 29.9
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 777..827 e-value: 1.4E-6 score: 28.4
IPR017877	Myb-like domain	PROSITE	PS50090	MYB_LIKE	coord: 770..828 score: 8.281
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 776..827

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig103	contig	C-linearis_contig103:386277..400027 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig103.842.1	mRNA_C-linearis_contig103.842.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig103 385987..400074 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig103.842.1 ID=prot_C-linearis_contig103.842.1|Name=mRNA_C-linearis_contig103.842.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1167bp
MTGPQAEVYSAVASSPEIVAALSGAAPPEPKPEPEPEPAASNGSAASKAV
MSGGGTAAEEALLALRRAALTGALEKTPPPGSTVTAGQAEARKEEFWRGH
VKDLELTASDRLEKYSGKLVELGRAVGRLAAAGKKVVVLGALPDALALVH
QYLTETDVPHECWAAHEEMFPPDDGTTVPAAPTSTASSTTDAAKPSAAET
APTPPPAAAAAEEKAEAKAEAEAKSNGTMASLLGVHHRPHGSFPSRSISP
QLPPPPPKPAHERLWDGVQGPLWRFRSSSRTPVILAPPSAVLEAARVGGG
AGPCRDGEPRSRPGSEETRRSSLMGLGPIDAVLVLDEHLSLPSPSTTTAT
TTADSSSSSSSSSSSSSSASSYSRAALSSALKSLLALPLLARGESPVVGP
ARGSGGGGGGGGGGGGGGGGGGGGSSRRRIVTVVRFLAEGTVEEALEEGG
AGASMGSLEGRPLGEVIFGPSFAKQKGTPVLPATPTPAAATPPPTSTPTA
TSAAGADTKATGNKKGEEAEKAASLDVVGAEASGAAAAEAALARARCAVE
GKKFAVRREAKDEASAAVPPVAGTKRKALASRDGDAGGPGAHWSESLPPL
RRMRMSARSPVGVEEILMEEIVQMDPNDFDTGRGSFDTDETRVFARLAQE
GHPIPPPLLSYAVDATLAATPGHSFTERVRDLHLLGIAPDPFLHCMPCID
LAMPPDHNMVLNEAVEVPSWMSTSFGQELGCSLSYVDRLMVPPNRNKKLK
KAMSPRESSRRDGERSGSGRTKASVEEWTKTEDRLLVGAVQQFGENWVLV
AFSINKYPILRGRMRCGSQCKARYSNLVALGTAQRLPRTGAARPLSVRLR
EDYRGAAILPDQPPALTLQMRSRVPLVPIAGAAARQAFSARFTALVKAVQ
KKPAPPPIPGCDNPEAQIQPPHNSHAKAAEDAGAAGALAPTQITDRLRAA
LLQQQQQLMQAQQQAHLAQRQAQQQQQQHHHAAQQQAQQQALQQQQQQAI
VQQHAAALAAQQQQRQQQAAAQTAAAGHGIQPQAPLPAVPPAQQLQQGAA
AAAVSSAAPPVVSAGGVPAGTVPTSPAQSLAANLSSQVRALLSRAPSTAG
GSSGSTNQVLEALRLHPQLTSKIQATIHRTDTTDAQKVEALAAMLSAVRS
SSAAGSAAGAPAGSRT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR017877	Myb-like_dom
IPR009057	Homeobox-like_sf