mRNA_C-linearis_contig103.828.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig103.828.1
Unique NamemRNA_C-linearis_contig103.828.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig103.828.1 vs. uniprot
Match: D8LKD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD5_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 2.830e-89
Identity = 144/162 (88.89%), Postives = 149/162 (91.98%), Query Frame = 1 
Query:   43 RARGSA--DEGKPVSRQLSRSYFVPRSLEGYERHLRQIHCEGYLQRQSRTSGTWRRRWFLLKDGYLSYFQDQEEAEVYRSKDGDSEFHHHPSSQRQLSLDCVEAVRTEEKIGPLVFRVISSHRDDLVLRAESKEGMNDWLFGFHRALASIIMRVIENKQGAG 522
            R RG A  DEG+PVSRQLSRSYFVPRSLEGYERHLRQIHCEGYLQRQSRTSG WRRRWFLLKDGYLSYFQDQEEAE YRSK+G S+FHHHPSS RQLSLDCVEAVRTEEKI PLVFRVISSHRDDLVLRAESKE MNDWLFGFHRALASII RV+ NK+G G
Sbjct:   48 RRRGGAVGDEGRPVSRQLSRSYFVPRSLEGYERHLRQIHCEGYLQRQSRTSGAWRRRWFLLKDGYLSYFQDQEEAEGYRSKEGGSQFHHHPSSLRQLSLDCVEAVRTEEKIRPLVFRVISSHRDDLVLRAESKEAMNDWLFGFHRALASIIARVVGNKRGGG 209
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BLAST of mRNA_C-linearis_contig103.828.1 vs. uniprot
Match: A0A024GTT7_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GTT7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.860e-15
Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 1 
Query:   91 SRSYFVPRSLEGYERHLRQIHCEGYLQRQS-RTSGTWRRRWFLLKDGYLSYFQDQEEAEVYRSKDGDSEFHHHPSSQRQL-SLDCVEAVRTEEKIGPLVFRVISSHRDDLVLRAESKEGMNDWLFGFHRALASIIMRVIE 504
            S SYF PR+L G       +H EG L++QS +    W++RWF+++   L Y++   +         D+  H  P   R +  LD V++V T +  G   F++   HR   VLRAESK+ M DWLF F R++A+II  +++
Sbjct:  586 SASYFQPRTLAG------PVHLEGCLEKQSVKNRSVWKQRWFVMQTSQLIYYKSARDV-----SSSDAITHPRPPGCRGIIELDQVDSVTTAKDFGVGAFQIRCQHRK-YVLRAESKDRMQDWLFNFQRSIANIISMLLQ 713
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BLAST of mRNA_C-linearis_contig103.828.1 vs. uniprot
Match: A0A7S1GM84_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GM84_CYCTE)

HSP 1 Score: 51.6 bits (122), Expect = 1.900e-5
Identity = 28/89 (31.46%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:  316 QRQLSLDCVEAVR-TEEKIGPLVFRVISSHRDD-------------------LVLRAESKEGMNDWLFGFHRALASIIMRVIENKQGAG 522
            ++++SLDCV AVR TE + G   F +++   DD                   L+LRA++ + +N+WLF FHR++AS +  +++     G
Sbjct:   14 EKRVSLDCVGAVRSTELEYGQCSFELLALREDDELDVSTGNARSVSNDRTDSLILRAQNPDELNEWLFQFHRSIASFMRNIMDVMSNRG 102
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BLAST of mRNA_C-linearis_contig103.828.1 vs. uniprot
Match: A0A4Y2M4L3_ARAVE (Uncharacterized protein CG43867 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2M4L3_ARAVE)

HSP 1 Score: 53.5 bits (127), Expect = 4.100e-5
Identity = 40/116 (34.48%), Postives = 54/116 (46.55%), Query Frame = 1 
Query:  160 GYLQRQSRTSGTWRRRWFLLKDGYLSYFQDQEEAEVYRSKDGDSEFHHHPSSQRQLSLDCVEAVRTEEKIGPLVFRVISSHRDDLVLRAESKEGMNDWLFGFHRALASIIMRVIEN 507
            GYL +      TWRRRWF+LKDG LSY++ Q +  + R   G            Q+ LD V  V   E  G   F V +S R    L A+S   M +W+    + L ++I R   N
Sbjct:  647 GYLTKLGGKLKTWRRRWFVLKDGILSYYKSQND--IGRKPQG------------QILLDDVSRVNRAE--GASTFEVATSKRT-YYLTADSNSTMEEWI----KVLQNVIRRNTNN 741
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BLAST of mRNA_C-linearis_contig103.828.1 vs. uniprot
Match: F0WZ08_9STRA (Protein phosphatase 1E putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WZ08_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 5.390e-5
Identity = 26/60 (43.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:  325 LSLDCVEAVRTEEKIGPLVFRVISSHRDDLVLRAESKEGMNDWLFGFHRALASIIMRVIE 504
            + LD V++V T ++ G   F++   HR   VLRAESK+ M DWLF F R++A+II  +++
Sbjct:  431 IELDQVDSVTTAKEFGVGAFQIRCHHRK-YVLRAESKDRMQDWLFNFQRSIANIISMLLQ 489
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BLAST of mRNA_C-linearis_contig103.828.1 vs. uniprot
Match: A0A162P3D7_9CRUS (Pleckstrin domain-containing family H member 1 n=21 Tax=Daphnia TaxID=6668 RepID=A0A162P3D7_9CRUS)

HSP 1 Score: 52.8 bits (125), Expect = 7.650e-5
Identity = 37/122 (30.33%), Postives = 62/122 (50.82%), Query Frame = 1 
Query:  130 ERHLRQIHCEGYLQRQSRTSGTWRRRWFLLKDGYLSYFQDQEEAEVYRSKDGDSEFHHHPSSQRQLSLDCVEAVRTEEKIGPLVFRVISSHRDDLVLRAESKEGMNDWLFGFHRALASIIMR 495
            ERH  ++   GYL + S    TWR+RWF+LK+G LSY++ Q  +++ R   G            Q+SLD  ++ R     G   F + +S +    L A+S   +++W+    R L +++ R
Sbjct:  868 ERHSDELEKSGYLTKLSGKLKTWRKRWFVLKNGTLSYWKSQ--SDLGRKPQG------------QISLD--DSCRVWRADGAATFEISTSKKTHY-LTADSSSTVDEWV----RILQNVVRR 968
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LKD5_ECTSI2.830e-8988.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A024GTT7_9STRA7.860e-1535.71Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A7S1GM84_CYCTE1.900e-531.46Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A4Y2M4L3_ARAVE4.100e-534.48Uncharacterized protein CG43867 n=2 Tax=Araneus ve... [more]
F0WZ08_9STRA5.390e-543.33Protein phosphatase 1E putative n=1 Tax=Albugo lai... [more]
A0A162P3D7_9CRUS7.650e-530.33Pleckstrin domain-containing family H member 1 n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:189331..191082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score290.0
Seed ortholog evalue7.2e-76
Seed eggNOG ortholog2880.D8LKD5
KEGG koko:K01090
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons4
Model size524
Cds size522
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.828.1prot_C-linearis_contig103.828.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig103 189333..191082 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927376.1574137-CDS-C-linearis_contig103:189332..1894941622927376.1574137-CDS-C-linearis_contig103:189332..189494Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 189333..189494 -
1690879663.181872-CDS-C-linearis_contig103:189332..1894941690879663.181872-CDS-C-linearis_contig103:189332..189494Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 189333..189494 -
1622927376.1692972-CDS-C-linearis_contig103:190049..1901871622927376.1692972-CDS-C-linearis_contig103:190049..190187Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 190050..190187 -
1690879663.1929438-CDS-C-linearis_contig103:190049..1901871690879663.1929438-CDS-C-linearis_contig103:190049..190187Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 190050..190187 -
1622927376.185206-CDS-C-linearis_contig103:190442..1906031622927376.185206-CDS-C-linearis_contig103:190442..190603Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 190443..190603 -
1690879663.202158-CDS-C-linearis_contig103:190442..1906031690879663.202158-CDS-C-linearis_contig103:190442..190603Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 190443..190603 -
1622927376.1980898-CDS-C-linearis_contig103:191021..1910821622927376.1980898-CDS-C-linearis_contig103:191021..191082Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 191022..191082 -
1690879663.214946-CDS-C-linearis_contig103:191021..1910821690879663.214946-CDS-C-linearis_contig103:191021..191082Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 191022..191082 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig103.828.1

>prot_C-linearis_contig103.828.1 ID=prot_C-linearis_contig103.828.1|Name=mRNA_C-linearis_contig103.828.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=174bp
GGGRTTAINIGGRSRARGSADEGKPVSRQLSRSYFVPRSLEGYERHLRQI
HCEGYLQRQSRTSGTWRRRWFLLKDGYLSYFQDQEEAEVYRSKDGDSEFH
HHPSSQRQLSLDCVEAVRTEEKIGPLVFRVISSHRDDLVLRAESKEGMND
WLFGFHRALASIIMRVIENKQGAG
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mRNA from alignment at C-linearis_contig103:189331..191082-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig103.828.1 ID=mRNA_C-linearis_contig103.828.1|Name=mRNA_C-linearis_contig103.828.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1752bp|location=Sequence derived from alignment at C-linearis_contig103:189331..191082- (Chordaria linearis ClinC8C monoicous)
GGCGGGGGTAGGACCACGGCGATTAACATCGGCGGACGAAGCCGGGCTCG
CGGTTCGGCAGGTGAGCTGTTTTGGCTCATTGTTGCTCTTGGTACATAAG
AAACCAAGAGGAGTGGGGGGGCTCCGCAACTGGAGAGGGTTTGGGGACGT
TTGTGTGGGGGCGATTGTTAGACAGCGGCAGGCGCCCGCGAGGTTTGCGG
TGTTGTTCGAGTACTGCAACACTTGCCGTGTGTTACATGGTCGTCCGGGT
AAGACAGAACGCCACCCTCAAAACGAAAATAAGCAGTTCCCGCACTCTGC
CAACCAGCGAAGTTCAGAAGTCACGACCAAGCCCAGGTCCCGCCAGAGCT
CAGTTACATTCCCTACGGATGCGAGGTCCATGATCGAACAACTTCGGCTT
GTGGATGCATGATGGACGAGTACCCCTCAACCCCCCCCCCCCCGCCGCCC
CTATTTTGTACCATGGCATGCTTTTGCAGATGAAGGCAAGCCCGTGTCGC
GGCAGCTGTCGCGGAGCTACTTCGTTCCGCGCAGCTTGGAAGGGTACGAG
CGCCACCTCCGGCAGATCCACTGCGAGGGCTACCTGCAGCGGCAGAGCCG
GACATCCGGCACGTGGCGGAGGCGCTGGTTTCTCCTCAAGGTTCGACAGA
GTAGTTCGGTCTGCTTTGATGTTTCTTCTCCTCAGGGTGGGCGACAAAAT
TGGCCGGAGAGACGACAACGGTTTTAGCCTAGTGTAGCTGTTGTTTTTCC
TCGAGGGAGGACTACTGCTGTGTTGCCTTGCTGTTTGTCACCGAGGTTCG
TCTGTTGTGTGTCGGGTTGGCTCATCAGAAAATACTGTACCAGTATATTT
TGTTCTGCTGCTGCTGCTGCTGCTGCGGCTGCTGCGATTGTGTAGGACGG
GTACCTGTCGTACTTCCAAGACCAAGAGGAGGCGGAGGTCTATCGATCCA
AGGACGGCGACTCGGAGTTTCACCATCACCCCAGCTCTCAGAGGCAGCTA
TCCCTGGACTGCGTCGAGGCCGTCCGGACAGAGGTGAGTGAGGGGCGCCC
GCCCGTGCTTGTGTGTGTTTCTGCAGAGGAAGAGAATACCGTTTTTGAAA
AACGGCATCGGTGCTTTCAAACGACCAGACTCATCCCCGTTAACTTTTTT
GTTTTATGTTGCGCCGACCATGGTGCCCGGCTGGCCAATGAGCGTACTTA
GCTATTTGGTGGCTTTCCGACGAGAGGAAGCGTCGGAGGCAAGGTGAAGC
TTGGGCGCAGAGGGGAAGCAGAATCCACCGCGAGAGTTGTGTTCTTCCGC
GCGTGGACGGTGAACGTTGCCACATGCTACAGGTCGTGCTTCCCAAACGA
CAAGATGAATGCTGAATACCTTCGAAAGCGTTCGATCGCACAGGGCAGGG
GGTGCACTGAGCGATCTTCTCACCGTGACTGATCTCAAAAACATCGATCG
CACAGCAGCAGTGGCGAGGAGGGAGCGCACCACTGCAACCTCCCCTGTAC
CTCTTATAAAAAAAGCATGCTGCCTACATAAAACGCGTGCAATAGTCCAC
CTACCACCTCAACCCCGCTTCATTTTTCTCGCTCGCAGGAGAAGATCGGC
CCGCTGGTGTTCCGGGTGATCTCGAGCCACCGAGACGACCTGGTGCTTCG
CGCCGAGTCTAAGGAGGGGATGAACGACTGGCTGTTCGGGTTTCACAGGG
CCCTGGCCAGCATCATCATGCGGGTCATCGAGAACAAGCAGGGGGCGGGG
GC
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Coding sequence (CDS) from alignment at C-linearis_contig103:189331..191082-

>mRNA_C-linearis_contig103.828.1 ID=mRNA_C-linearis_contig103.828.1|Name=mRNA_C-linearis_contig103.828.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at C-linearis_contig103:189331..191082- (Chordaria linearis ClinC8C monoicous)
GGCGGGGGTAGGACCACGGCGATTAACATCGGCGGACGAAGCCGGGCTCG
CGGTTCGGCAGGGCGGGGGTAGGACCACGGCGATTAACATCGGCGGACGA
AGCCGGGCTCGCGGTTCGGCAGATGAAGGCAAGCCCGTGTCGCGGCAGCT
GTCGCGGAGCTACTTCGTTCCGCGCAGCTTGGAAGGGTACGAGCGCCACC
TCCGGCAGATCCACTGCGAGGGCTACCTGCAGCGGCAGAGCCGGACATCC
GGCACGTGGCGGAGGCGCTGGTTTCTCCTCAAGATGAAGGCAAGCCCGTG
TCGCGGCAGCTGTCGCGGAGCTACTTCGTTCCGCGCAGCTTGGAAGGGTA
CGAGCGCCACCTCCGGCAGATCCACTGCGAGGGCTACCTGCAGCGGCAGA
GCCGGACATCCGGCACGTGGCGGAGGCGCTGGTTTCTCCTCAAGGACGGG
TACCTGTCGTACTTCCAAGACCAAGAGGAGGCGGAGGTCTATCGATCCAA
GGACGGCGACTCGGAGTTTCACCATCACCCCAGCTCTCAGAGGCAGCTAT
CCCTGGACTGCGTCGAGGCCGTCCGGACAGAGGACGGGTACCTGTCGTAC
TTCCAAGACCAAGAGGAGGCGGAGGTCTATCGATCCAAGGACGGCGACTC
GGAGTTTCACCATCACCCCAGCTCTCAGAGGCAGCTATCCCTGGACTGCG
TCGAGGCCGTCCGGACAGAGGAGAAGATCGGCCCGCTGGTGTTCCGGGTG
ATCTCGAGCCACCGAGACGACCTGGTGCTTCGCGCCGAGTCTAAGGAGGG
GATGAACGACTGGCTGTTCGGGTTTCACAGGGCCCTGGCCAGCATCATCA
TGCGGGTCATCGAGAACAAGCAGGGGGCGGGGGAGAAGATCGGCCCGCTG
GTGTTCCGGGTGATCTCGAGCCACCGAGACGACCTGGTGCTTCGCGCCGA
GTCTAAGGAGGGGATGAACGACTGGCTGTTCGGGTTTCACAGGGCCCTGG
CCAGCATCATCATGCGGGTCATCGAGAACAAGCAGGGGGCGGGG
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