prot_C-linearis_contig103.823.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig103.823.1
Unique Nameprot_C-linearis_contig103.823.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length158
Homology
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BLAST of mRNA_C-linearis_contig103.823.1 vs. uniprot
Match: D8LNF8_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF8_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.850e-9
Identity = 52/117 (44.44%), Postives = 71/117 (60.68%), Query Frame = 0 
Query:    4 LHYAACVGCVELTIALL-SRGLIDIDELHQEVLSPLTYAAIVDHATVARILASRGANVSIASAKEEGLTALRLSAQRGHVGVAEVLIIKAGADPEAIFSAEGATPLHSAAE-GHWKV 118
            LH AA  G +E  +ALL SR  IDI++  +   +PL  AA    + V RIL ++GANVS+ +  ++  TAL  S Q G   V   +++KAGAD EA+ S EG TPLH  A+ G W+V
Sbjct:   19 LHRAANDGSIERVVALLASRPSIDINQGAEYGWTPLMLAAWRGSSRVVRILPNKGANVSVVA--DDFHTALHFSTQDGGHPVVTKMLLKAGADFEAVTS-EGETPLHLVADSGCWEV 132
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BLAST of mRNA_C-linearis_contig103.823.1 vs. uniprot
Match: D8LT71_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT71_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.110e-8
Identity = 45/106 (42.45%), Postives = 60/106 (56.60%), Query Frame = 0 
Query:    4 LHYAACVGCVELTIALLSRGLIDIDELHQEVLSPLTYAAIVDHATVARILASRGANVSIASAKEEGLTALRLSAQRGHVGVAEVLIIKAGADPEAIFSAEGATPLH 109
            LH AA  G VEL +ALLS G IDID+  Q   +PL YA I     V RIL   GA  ++ +  + G+ AL  +A  GH+GV + L+  AGA+ E   ++   T LH
Sbjct:   19 LHQAAQDGLVELALALLSSGWIDIDQGTQGGWTPLMYATIEGCLLVVRILLDNGAKTNLVA--DGGVDALSTAAMGGHLGVVKALLA-AGANLEGANTSLSTTALH 121
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BLAST of mRNA_C-linearis_contig103.823.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.660e-6
Identity = 51/132 (38.64%), Postives = 74/132 (56.06%), Query Frame = 0 
Query:   11 GCVELTIALLSRGLIDIDELHQEV-LSPLTYAAIVDHATVARILASRGANVSIASAKEEGLTALRLSAQRGHVGVAEVLIIKAGADPEA---------------IFSAE--GATPLH-SAAEGHWKVMRVLI 123
            G VE T+ALLSRG +DID  + +   +PL  A+ + +  V R+L   GA VS+A    +G TAL LS    H+ V++ LI KAGA+ EA               + S +  GATPL+ SA +G  + ++VL+
Sbjct:    7 GSVERTVALLSRGSVDIDGSYGDAGRTPLMVASTMGYLRVERVLLRLGAGVSVAD--NDGATALHLSVFNQHLAVSKALI-KAGAEVEARCVDGMVVLIHAGANVDSEQESGATPLYTSARQGRLEDVKVLV 135
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.823.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNF8_ECTSI1.850e-944.44EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LT71_ECTSI1.110e-842.45EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K1W5_9PHAE1.660e-638.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 33..62
e-value: 3.6
score: 16.6
coord: 103..132
e-value: 26.0
score: 13.7
coord: 4..29
e-value: 2500.0
score: 2.1
coord: 68..98
e-value: 30.0
score: 13.5
IPR002110Ankyrin repeatPFAMPF00023Ankcoord: 104..127
e-value: 0.028
score: 14.9
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 33..65
score: 8.603
IPR020683Ankyrin repeat-containing domainPFAMPF12796Ank_2coord: 4..97
e-value: 4.9E-8
score: 33.4
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 1..143
score: 21.8
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 2..64
e-value: 2.3E-7
score: 32.3
coord: 65..148
e-value: 1.7E-14
score: 55.3
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 4..127
NoneNo IPR availablePANTHERPTHR24134FAMILY NOT NAMEDcoord: 61..131
coord: 4..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:133122..133595 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.823.1mRNA_C-linearis_contig103.823.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig103 131129..133802 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig103.823.1 ID=prot_C-linearis_contig103.823.1|Name=mRNA_C-linearis_contig103.823.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=158bp
MGGLHYAACVGCVELTIALLSRGLIDIDELHQEVLSPLTYAAIVDHATVA
RILASRGANVSIASAKEEGLTALRLSAQRGHVGVAEVLIIKAGADPEAIF
SAEGATPLHSAAEGHWKVMRVLIEPGAMSTAAAAARRGGTAVHRFYTRRL
RGGTSRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
IPR036770Ankyrin_rpt-contain_sf