mRNA_C-linearis_contig103.823.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig103.823.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 115 bits (288), Expect = 1.830e-23 Identity = 76/172 (44.19%), Postives = 97/172 (56.40%), Query Frame = 3 Query: 642 LHAAAEGGHVEAVRELLRAKANPLLAWTTVLSRAPLLFSRWTWRRERGTWRCEISRQLGIEGCGGASGGIDALCSAAVNNHVDTLAILTHAGVVDTANALGRAAELGGEASVKFLSLSLLQQ*QQQEGGKSTDGGAYVNATDSTGVTPLAMRILNL*PCSPKVVRLLVNAGS 1157 LH AAE G V +RELLR ANPLL T+ + + E+ ++LGIEGC S G AL AA N H+D +AILT AGVVDT AL AA +G EASVKFL + +EGG +G AY+NA D G TPL + +P++VR+LV+AG+ Sbjct: 244 LHIAAEEGQVAVMRELLRGNANPLLIQTSPPGNTTTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRH-----RHKEGGCGVEG-AYLNARDVNGYTPLVVCTQGCFSQAPRIVRMLVDAGA 409
BLAST of mRNA_C-linearis_contig103.823.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE) HSP 1 Score: 108 bits (269), Expect = 2.460e-21 Identity = 81/178 (45.51%), Postives = 104/178 (58.43%), Query Frame = 3 Query: 633 TPLLHAAAEGGHVEAVRELLRAKANPLLAWTTVLSRA---PLLFSRWTWRRERGTWRCEISRQLGIEGCGGASGGIDALCSAAVNNHVDTLAILTHAGVVDTANALGRAAELGGEASVKFLSLSLLQQ*QQQEGGKSTDGGAYVNATDSTGVTPLAMRILNL*PCSPKVVRLLVNAGS 1157 TPL + AA G+V AV LL AKA+PLL + + PL + RE E+ RQ+GI+GCGG+SGG +AL AA+ + +D +AILT AGVVDT AL AA GGEA +KFL +Q G KSTD AY+N + G+T L I C P+VV+LLV AG+ Sbjct: 150 TPL-YTAAWNGNVVAVWLLLLAKADPLLTCASDSGKERFLPLDVAAQNGHREVVN---ELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDTGLALVVAAGYGGEAPLKFLL-------EQARGRKSTDRAAYMNTLNGVGLTSLLDGIQR---CRPRVVQLLVEAGA 313
BLAST of mRNA_C-linearis_contig103.823.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 107 bits (266), Expect = 4.980e-21 Identity = 81/177 (45.76%), Postives = 102/177 (57.63%), Query Frame = 3 Query: 633 TPLLHAAAEGGHVEAVRELLRAKANPLLAWTTVLSRAPLLFSRWTWRRERGTWRC--EISRQLGIEGCGGASGGIDALCSAAVNNHVDTLAILTHAGVVDTANALGRAAELGGEASVKFLSLSLLQQ*QQQEGGKSTDGGAYVNATDSTGVTPLAMRILNL*PCSPKVVRLLVNAGS 1157 TPL + AA G+V+A R LL AKA+PLL TTV + F E G E+ RQ+GI+GCGG+SGG+ AL AA +++ + ILT+AGVVDT AL AA GGE +KFL +Q K+ D AYVN D GVTPL I + P+VVRLLV AG+ Sbjct: 150 TPL-YTAAWKGNVDAARLLLLAKADPLL--TTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLL-------EQARARKTMDEAAYVNTRDRGGVTPLLWGIQHY---RPRVVRLLVEAGA 313
BLAST of mRNA_C-linearis_contig103.823.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI) HSP 1 Score: 102 bits (255), Expect = 1.120e-19 Identity = 77/179 (43.02%), Postives = 94/179 (52.51%), Query Frame = 3 Query: 633 TPLLHAAAEGGHVEAVRELLRAKANPLLAWTTVLSRAPLLFSRWTWRRERGTWRCEISRQLGIEGCGGASGGIDALCSAAVNNHVDTLAILTHAGVVDTANALGRAAELGGEASVKFLSLSLLQQ*QQQEGGKSTDGGAYVNATDSTGVTPLAMRI----LNL*PCSPKVVRLLVNAGS 1157 TPL A EG +EA RELLRA ANPL+ + + PL + R E+ +++GIEGCGG S G AL A V +A+LTHAGVVDT AL +A LG EASVK+L Q K GAYVN D G TPL I ++ P+V RLLV AG+ Sbjct: 136 TPLFRAMTEG-QLEATRELLRANANPLITRAPLPTLLPLDSAA---RNGNLLVMRELIQRVGIEGCGGQSRGEVALLMAGEGRRVAAMALLTHAGVVDTGQALTISAGLGREASVKYLL---------QNHAKHYGPGAYVNVRDRNGTTPLLSSIYVCGVDEQSSFPRVARLLVEAGA 301
BLAST of mRNA_C-linearis_contig103.823.1 vs. uniprot
Match: D7G138_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G138_ECTSI) HSP 1 Score: 89.7 bits (221), Expect = 5.230e-16 Identity = 66/174 (37.93%), Postives = 85/174 (48.85%), Query Frame = 3 Query: 651 AAEGGHVEAVRELLRAKANPLLAW-----TTVLSRAPLLFSRWTWRRERGTWRCEISRQLGIEGCGGASGGIDALCSAAVNNHVDTLAILTHAGVVDTANALGRAAELGGEASVKFLSLSLLQQ*QQQEGGKSTDGGAYVNATDSTGVTPLAMRILNL*PCSPKVVRLLVNAGS 1157 AA GGHV+A+R+LLRAKA P LA + PL S E E ++GIEG GGA GG AL A H+D + LT+AGVVDT A+ AA G E + L EG + Y N G TPL + + CSP+++RLLV+ G+ Sbjct: 2 AAYGGHVDAIRQLLRAKAKPCLAARIPDSNNNAANVPLAVSALLGYSEMVQ---EFINEVGIEGRGGARGGEQALAVATREQHMDVMRALTNAGVVDTGEAILSAAGCGRERAAMHLL-------HHHEGRNTAGTREYANTVGPNGTTPLFLAV-GCSRCSPRIMRLLVDDGA 164
BLAST of mRNA_C-linearis_contig103.823.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 4.130e-15 Identity = 54/121 (44.63%), Postives = 73/121 (60.33%), Query Frame = 3 Query: 798 EISRQLGIEGCGGASGGIDALCSAAVNNHVDTLAILTHAGVVDTANALGRAAELGGEASVKFLSLSLLQQ*QQQEGGKSTDGGAYVNAT-DSTGVTPLAMRILNL*PCSPKVVRLLVNAGS 1157 E+ ++ GI GC GAS G+DAL AAV+ H+D +A+L AGVVDT NAL LG E ++KFL ++ G+ T Y + D G TPL + + PCSP+VVRLLV+AG+ Sbjct: 199 ELVQRFGIRGCAGASAGVDALGQAAVDQHLDVMALLCDAGVVDTGNALVATVFLGRERALKFLL---------EQKGEGTARTTYASTPRDGRGHTPL-LSAVTTGPCSPRVVRLLVDAGA 309
BLAST of mRNA_C-linearis_contig103.823.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 7.790e-15 Identity = 71/164 (43.29%), Postives = 91/164 (55.49%), Query Frame = 3 Query: 687 LLRAKANPLLAWTTVL--SRAPLLFSRWTWRRERGTWRCEISRQLGIEGCGGASGGIDALCSAAVNNHVDTLAILTHAG-VVDTANALGRAAELGGEASVKFLSLSLLQQ*QQQEGGKSTDGGAYVNAT-DSTGVTPL--AMRILNL*PCSPKVVRLLVNAGSS 1160 LLRAKANPLL T + S PL + + E+ RQ+GI GCGG SGG++AL AA H++ +A+L AG VVDT AL AAE G +VKFL + D AYVN T D G TP+ A+ + CSPK+VRLLV+AG++ Sbjct: 164 LLRAKANPLLCSHTPMGVSYVPLEMAALHGNPDVAR---EMIRQVGIRGCGGPSGGVEALRQAADEEHLEFMAVLLDAGGVVDTGPALILAAENGRAVAVKFLLRR-----------RQADADAYVNGTRDPYGRTPVMCAVDVGAGRLCSPKIVRLLVDAGAN 313
BLAST of mRNA_C-linearis_contig103.823.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI) HSP 1 Score: 87.0 bits (214), Expect = 1.930e-14 Identity = 70/167 (41.92%), Postives = 88/167 (52.69%), Query Frame = 3 Query: 693 RAKANPLLAWTTVL-SRAPLLFSRWTWRRERGTWRCEISRQLGIEGCGGASGGIDALCSAAVNNHVDTLAILTHAGVVDTANALGRAAELGGEASVKFLSLSLLQQ*QQQEGGKSTDGGAYVNAT-DSTGVTPLAMRI---LNL*PCSPKVVRLLVNAGSSRHDITR 1178 RAKANPLL + PL + + R E+ ++ GI GCGG +GG+ AL AA+ H+D + LT AGVVDT AL +A G VKFL QQ+ G ++ AYV+ D G TPL I LN CSPKVVRLLV+AG+ I R Sbjct: 168 RAKANPLLTRVNLAWQHLPLDTAA---QNGRLGVVLELLQRFGIRGCGGGTGGVTALQLAAMKPHMDVMLALTTAGVVDTGIALVKATSFGHMDVVKFLL--------QQQNGTPSEKSAYVSRPRDPCGRTPLICNIDVGLNQ-SCSPKVVRLLVDAGADTTSIVR 322
BLAST of mRNA_C-linearis_contig103.823.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI) HSP 1 Score: 82.4 bits (202), Expect = 5.810e-14 Identity = 62/162 (38.27%), Postives = 82/162 (50.62%), Query Frame = 1 Query: 1129 WCGCSS-------TPARAGTTSPVH--------KLNDPPLALANFNFCFKDKAVGGHDATEQQFNTPKLVRRLLLQVEAVHAVSWLWHSDATA-VEGINRSTTPST---PLALMMPILRRRAARRGAFLAALHRQS---SKN*SSATPACV*NAGALDVESM 1548 WC + A A TTS V + ND PLA+ ++K V G ATE+Q + + +RRLLL+V+AVHAVSWLW SDA + V + RS P PL+L +PIL+RRA F+A L R S S S AG + +ES+ Sbjct: 72 WCSSGNPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTS--LLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPRRPPLSLTLPILKRRAKTCHVFVATLLRSSPISSGRGSRRADLSKEKAGTVSLESL 231
BLAST of mRNA_C-linearis_contig103.823.1 vs. uniprot
Match: A0A6H5JL33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL33_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 1.210e-13 Identity = 67/163 (41.10%), Postives = 87/163 (53.37%), Query Frame = 3 Query: 693 RAKANPLLAWTTVLSRAPLLFSRWTWRRERGTWRC--EISRQLGIEGCGGASGGIDALCSAAVNNHVDTLAILTHAGVVDTANALGRAAELGGEASVKFLSLSLLQQ*QQQEGGKSTDGGAYVNATDS---TGVTPLAMRI---LNL*PCSPKVVRLLVNAGS 1157 RAKANPLL T + + F E G E+ +Q+ I+GCGGASGG+ AL AA++ +VD +++L AGV+DT AL AA EA VK L QQ G S G Y+ D+ G TPL I + CSP+VVRLLV+AG+ Sbjct: 171 RAKANPLLTKPTP---SGVTFVPLDTAAEYGQTEVVRELIKQVSIKGCGGASGGVYALRLAALSQNVDVMSVLADAGVMDTGEALITAAGRNDEAGVKLLL--------QQRHGTSAGGELYMYVNDTHDLVGRTPLLCSIDGGMAGFRCSPRVVRLLVDAGA 322 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.823.1 >prot_C-linearis_contig103.823.1 ID=prot_C-linearis_contig103.823.1|Name=mRNA_C-linearis_contig103.823.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=158bp MGGLHYAACVGCVELTIALLSRGLIDIDELHQEVLSPLTYAAIVDHATVAback to top mRNA from alignment at C-linearis_contig103:131129..133802- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.823.1 ID=mRNA_C-linearis_contig103.823.1|Name=mRNA_C-linearis_contig103.823.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2674bp|location=Sequence derived from alignment at C-linearis_contig103:131129..133802- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:131129..133802- >mRNA_C-linearis_contig103.823.1 ID=mRNA_C-linearis_contig103.823.1|Name=mRNA_C-linearis_contig103.823.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at C-linearis_contig103:131129..133802- (Chordaria linearis ClinC8C monoicous)back to top |