mRNA_C-linearis_contig103.817.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig103.817.1
Unique NamemRNA_C-linearis_contig103.817.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig103.817.1 vs. uniprot
Match: D7G674_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 3.860e-26
Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:    4 RVVSNTSPNSVILELQNFTVPEGTKYEDYLSKLQGLVGSAQTLGHVTPQDSTLQFAVRESVGDQFGLLTASILKNKEAGKVPFASIKEFMDE 279
            RVVS++SP  ++ +LQ FTVP GT Y +YL+ L GLV + + LG VTPQD+T+Q AVRESV DQ+ +LTAS+ K K+ G VPF +I   M E
Sbjct:   20 RVVSSSSPEKLVYDLQTFTVPTGTPYSEYLTTLHGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKQLGLVPFDNIDTLMQE 111
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BLAST of mRNA_C-linearis_contig103.817.1 vs. uniprot
Match: A0A6H5KBL4_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.080e-24
Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:    4 RVVSNTSPNSVILELQNFTVPEGTKYEDYLSKLQGLVGSAQTLGHVTPQDSTLQFAVRESVGDQFGLLTASILKNKEAGKVPFASIKEFMDE 279
            RVVS++SP  ++ +LQ F  P GT Y +YL+ LQGLV + + LG VTPQD+T+Q AVRESV DQ+ +LTAS+ K KE G VPF +I   M E
Sbjct:  278 RVVSSSSPEKLVYDLQTFAAPTGTPYSEYLTILQGLVQNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASVFKGKEKGVVPFDNIDTLMHE 369
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BLAST of mRNA_C-linearis_contig103.817.1 vs. uniprot
Match: A0A6H5KRF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 9.970e-22
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    4 RVVSNTSPNSVILELQNFTVPEGTKYEDYLSKLQGLVGSAQTLGHVTPQDSTLQFAVRESVGDQFGLLTASILKNKEAGKVPFASIKEFMDE 279
            RVVS++SP  ++ +LQ   VP GT Y +YL+ LQGLV + + LG VTPQD+T+Q AVRESV DQ+ +LTAS+ K KE   V F +I   M E
Sbjct:   74 RVVSSSSPEKLVYDLQTCAVPTGTPYSEYLTTLQGLVHNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASMFKGKELCVVAFDNIDTLMHE 165
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BLAST of mRNA_C-linearis_contig103.817.1 vs. uniprot
Match: A0A6H5K255_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K255_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 6.140e-21
Identity = 45/80 (56.25%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:    4 RVVSNTSPNSVILELQNFTVPEGTKYEDYLSKLQGLVGSAQTLGHVTPQDSTLQFAVRESVGDQFGLLTASILKNKEAGK 243
            RVVS++SP  ++ +LQ F VP GT Y +YL+ LQGLV + + L  VTPQD+T+Q AVRESV DQ+ +LTAS+ K KE G+
Sbjct:  472 RVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTTLQGLVHNVRNLAIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGR 551
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BLAST of mRNA_C-linearis_contig103.817.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.580e-20
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    4 RVVSNTSPNSVILELQNFTVPEGTKYEDYLSKLQGLVGSAQTLGHVTPQDSTLQFAVRESVGDQFGLLTASILKNKEAGKVPF 252
            RVV+++SP  V+ +LQ F VP GT Y +YL+ LQGL  + + L  VTPQD+T+Q AVRE V DQ+ +LTAS+ K KE G V F
Sbjct:   43 RVVNSSSPEKVVYDLQTFAVPTGTPYREYLTTLQGLGHNVRNLALVTPQDNTIQLAVREIVSDQYSVLTASVCKGKELGVVQF 125
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BLAST of mRNA_C-linearis_contig103.817.1 vs. uniprot
Match: A0A6H5JYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ6_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 8.660e-16
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    4 RVVSNTSPNSVILELQNFTVPEGTKYEDYLSKLQGLVGSAQTLGHVTPQDSTLQFAVRESVGDQ 195
            +VVS++SP  ++ +LQ F VP GT   +YL+ LQGLV + + LG VTPQD+T+Q AVRESV DQ
Sbjct:   20 KVVSSSSPEKLVYDLQRFAVPTGTPNSEYLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQ 83
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G674_ECTSI3.860e-2655.43CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KBL4_9PHAE4.080e-2455.43CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KRF6_9PHAE9.970e-2253.26CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K255_9PHAE6.140e-2156.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0Q4_9PHAE1.580e-2054.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYQ6_9PHAE8.660e-1656.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:73205..73483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size280
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927375.087618-CDS-C-linearis_contig103:73204..734831622927375.087618-CDS-C-linearis_contig103:73204..73483Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 73205..73483 +
1690879662.5609686-CDS-C-linearis_contig103:73204..734831690879662.5609686-CDS-C-linearis_contig103:73204..73483Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 73205..73483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.817.1prot_C-linearis_contig103.817.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig103 73205..73483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig103.817.1

>prot_C-linearis_contig103.817.1 ID=prot_C-linearis_contig103.817.1|Name=mRNA_C-linearis_contig103.817.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=93bp
TRVVSNTSPNSVILELQNFTVPEGTKYEDYLSKLQGLVGSAQTLGHVTPQ
DSTLQFAVRESVGDQFGLLTASILKNKEAGKVPFASIKEFMDE
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mRNA from alignment at C-linearis_contig103:73205..73483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig103.817.1 ID=mRNA_C-linearis_contig103.817.1|Name=mRNA_C-linearis_contig103.817.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at C-linearis_contig103:73205..73483+ (Chordaria linearis ClinC8C monoicous)
ACTAGGGTTGTTAGCAACACGTCGCCGAACTCAGTGATCCTTGAACTGCA
GAATTTTACTGTACCGGAGGGGACGAAGTACGAAGACTACTTGAGCAAGT
TGCAGGGGCTGGTGGGTAGCGCTCAGACGTTGGGGCATGTCACACCACAA
GACAGTACTCTGCAGTTTGCAGTCCGGGAGAGCGTGGGGGATCAGTTTGG
ACTTCTCACGGCTTCTATCCTCAAAAACAAGGAAGCAGGGAAGGTGCCGT
TCGCGTCTATCAAGGAATTCATGGACGAA
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Coding sequence (CDS) from alignment at C-linearis_contig103:73205..73483+

>mRNA_C-linearis_contig103.817.1 ID=mRNA_C-linearis_contig103.817.1|Name=mRNA_C-linearis_contig103.817.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at C-linearis_contig103:73205..73483+ (Chordaria linearis ClinC8C monoicous)
ACTAGGGTTGTTAGCAACACGTCGCCGAACTCAGTGATCCTTGAACTGCA
GAATTTTACTGTACCGGAGGGGACGAAGTACGAAGACTACTTGAGCAAGT
TGCAGGGGCTGGTGGGTAGCGCTCAGACGTTGGGGCATGTCACACCACAA
GACAGTACTCTGCAGTTTGCAGTCCGGGAGAGCGTGGGGGATCAGTTTGG
ACTTCTCACGGCTTCTATCCTCAAAAACAAGGAAGCAGGGAAGGTGCCGT
TCGCGTCTATCAAGGAATTCATGGACGAAACTAGGGTTGTTAGCAACACG
TCGCCGAACTCAGTGATCCTTGAACTGCAGAATTTTACTGTACCGGAGGG
GACGAAGTACGAAGACTACTTGAGCAAGTTGCAGGGGCTGGTGGGTAGCG
CTCAGACGTTGGGGCATGTCACACCACAAGACAGTACTCTGCAGTTTGCA
GTCCGGGAGAGCGTGGGGGATCAGTTTGGACTTCTCACGGCTTCTATCCT
CAAAAACAAGGAAGCAGGGAAGGTGCCGTTCGCGTCTATCAAGGAATTCA
TGGACGAA
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