mRNA_C-linearis_contig103.849.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig103.849.1
Unique NamemRNA_C-linearis_contig103.849.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig103.849.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.030e-30
Identity = 118/305 (38.69%), Postives = 138/305 (45.25%), Query Frame = -2 
Query:    7 RKLLSPGQAVPLAFHAPAPAERARVPGTPGFAPGDTPAXXXXXXXXXXXXXXXXXXXXDEAGVGRGGRRGGGVEK-QAGDEGRASPGLATXXXXXXXXXXXXXXXSCFRWEKMSWPDGGRTNSLEVSGSSLLLSGVGWRRWRGWAAATAGGSDPAEEGKGDNDRQPGEPGRRQHQGDPGQEAVAVEWQGSRVNPLGERAASHIDGATAPHMEEGGRSSKAAVSSEEAGPAGTT-----------DDSGLIAELASALDVRLSQTCLVLQPWNYGGGYDR--VEGRDGRKNWDSACNEGGRRESIV 879
            RKLLSPGQ VPL+  A AP   A+VPG    A GD  A                     + G     + G GV   Q GD   ASP                   +CFRW+K SWPDGGRTNSL VSG+S+LLS VGW RWR WAAA  G  D         D    +   ++ Q   G+E       G      GER A  ID ATA      G+ S +A       PA               D+GLIAELA A DV LS+TCL+L+PWNY  G DR  V G  G   W     EGG   ++V
Sbjct: 2095 RKLLSPGQIVPLSLCASAPLVGAQVPG----ATGDIGAGAATAATSDDTGNNITVRTDGQRGRATSDKVGDGVAPPQEGDSDTASP------PGSGAPSPGARSGACFRWKKRSWPDGGRTNSLAVSGASVLLSKVGWGRWRVWAAAATGSGDXXXXXLSPKDESAKQ---KRQQVVAGEETTGTGTPG--WTSFGEREAPPID-ATA----SAGKVSNSATQGSNLEPANVAVGIARADPLAASDTGLIAELAFAFDVNLSETCLILEPWNYDSGCDRSGVCGMGGDNGW-----EGGDGAAVV 2374
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BLAST of mRNA_C-linearis_contig103.849.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 6.400e-23
Identity = 107/292 (36.64%), Postives = 124/292 (42.47%), Query Frame = -2 
Query:   46 RKLLSPGQAVPLAFHAPAPAERARVPGTPGFAPGDTPAXXXXXXXXXXXXXXXXXXXXDEAGVGRGGRRGGGVEK-QAGDEGRASPGLATXXXXXXXXXXXXXXXSCFRWEKMSWPDGGRTNSLEVSGSSLLLSGVGWRRWRGWAAATAGGSDPAEEGKGDNDRQPGEPGRRQHQGDPGQEAVAVEWQGSRVNPLGERAASHIDGATAPHMEEGGRSSKAAVSSEEAGPAGTT-----------DDSGLIAELASALDVRLSQTCLVLQPWNYGGGYDR--VEGRDGRKNWD 879
            RKLLSPGQ VPL+  A AP    +VPG    A GDT A                     + G     + G GV   Q  D    SP                   +CFRW+K SWP GGRTNSL VSG+S+LLS VGW RWR WAA                                GQE       G  V   GER A   D ATA      G+ S +A       PA               D+G+IAELASA DV LS+TCL+L+PWN   G DR  V GR G  +W+
Sbjct: 1417 RKLLSPGQIVPLSLCASAPLVGVQVPG----AAGDTGAAAATAATSEDTGNKISVRTDGQRGRATSDKVGDGVAPLQEDDSDTVSP------LGSRAPSPGARSGACFRWKKRSWPGGGRTNSLAVSGASVLLSKVGWDRWRVWAAXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXGQETTDTGPPG--VTSFGEREAPPND-ATA----SAGKLSNSATQGSNLEPANVAVGITSADPLAASDAGMIAELASAFDVNLSETCLILEPWNCDSGRDRSGVCGRGGDNDWE 1689
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMF5_ECTSI1.030e-3038.69FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JYL2_9PHAE6.400e-2336.64FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:469455..470334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size882
Cds size630
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927374.6095614-UTR-C-linearis_contig103:469454..4697041622927374.6095614-UTR-C-linearis_contig103:469454..469704Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 469455..469704 +
1690879662.2362313-UTR-C-linearis_contig103:469454..4697041690879662.2362313-UTR-C-linearis_contig103:469454..469704Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 469455..469704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927374.6217642-CDS-C-linearis_contig103:469704..4703341622927374.6217642-CDS-C-linearis_contig103:469704..470334Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 469705..470334 +
1690879662.2448444-CDS-C-linearis_contig103:469704..4703341690879662.2448444-CDS-C-linearis_contig103:469704..470334Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 469705..470334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.849.1prot_C-linearis_contig103.849.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig103 469705..470334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig103.849.1

>prot_C-linearis_contig103.849.1 ID=prot_C-linearis_contig103.849.1|Name=mRNA_C-linearis_contig103.849.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=210bp
MCGAVAPSMCDAARSPRGFTLDPCHSTATASCPGSPWCCRLPGSPGWRSL
SPFPSSAGSLPPAVAAAQPRHRRHPTPDSSRLLPLTSSEFVRPPSGQLIF
SHRKQEPSSPPEPESEPEPALVAKPGDALPSSPACFSTPPPRRPPRPTPA
SSSFSLEPAREDAVAAAAAVAGAGVSPGAKPGVPGTRARSAGAGAWKARG
TACPGLKSFR
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mRNA from alignment at C-linearis_contig103:469455..470334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig103.849.1 ID=mRNA_C-linearis_contig103.849.1|Name=mRNA_C-linearis_contig103.849.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=880bp|location=Sequence derived from alignment at C-linearis_contig103:469455..470334+ (Chordaria linearis ClinC8C monoicous)
CCCACCAACAATGCTTTCCCTTCTTCCACCCTCGTTGCAGGCACTGTCCC
AGTTTTTTCGCCCGTCGCGCCCCTCGACGCGGTCGTACCCGCCGCCGTAG
TTCCACGGCTGCAGCACGAGGCAAGTCTGCGAGAGGCGGACGTCTAAGGC
CGACGCCAGTTCCGCTATCAAGCCCGAATCGTCCGTAGTACCTGCTGGCC
CTGCTTCTTCGCTGCTGACCGCGGCCTTGGAGCTTCGGCCACCCTCCTCC
ATGTGCGGAGCCGTGGCCCCATCGATGTGTGATGCTGCCCGCTCACCGAG
GGGGTTCACCCTCGACCCCTGCCATTCCACAGCCACGGCCTCTTGCCCGG
GGTCTCCTTGGTGCTGCCGCCTGCCCGGCTCGCCTGGTTGGCGGTCGTTG
TCGCCTTTTCCCTCCTCCGCGGGGTCGCTGCCGCCGGCTGTCGCCGCCGC
CCAGCCACGCCACCGGCGCCACCCCACCCCCGACAGCAGTAGGCTGCTCC
CGCTGACCTCGAGCGAGTTCGTGCGGCCGCCGTCAGGCCAGCTCATCTTC
TCCCACCGGAAACAAGAGCCATCGTCACCGCCAGAGCCAGAGTCAGAGCC
AGAGCCAGCACTGGTAGCCAAACCCGGGGACGCTCTGCCTTCGTCCCCTG
CCTGTTTCTCCACGCCCCCCCCTCGTCGCCCGCCACGCCCAACACCCGCT
TCATCTTCCTTCTCCTTGGAGCCGGCACGAGAAGATGCTGTGGCTGCCGC
TGCGGCTGTGGCTGGGGCTGGGGTGTCACCGGGGGCGAAGCCAGGCGTTC
CGGGAACCCGAGCACGCTCCGCCGGAGCCGGCGCGTGGAAAGCGAGAGGG
ACGGCTTGCCCCGGGCTCAAGAGCTTCCGC
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Coding sequence (CDS) from alignment at C-linearis_contig103:469455..470334+

>mRNA_C-linearis_contig103.849.1 ID=mRNA_C-linearis_contig103.849.1|Name=mRNA_C-linearis_contig103.849.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at C-linearis_contig103:469455..470334+ (Chordaria linearis ClinC8C monoicous)
ATGTGCGGAGCCGTGGCCCCATCGATGTGTGATGCTGCCCGCTCACCGAG
GGGGTTCACCCTCGACCCCTGCCATTCCACAGCCACGGCCTCTTGCCCGG
GGTCTCCTTGGTGCTGCCGCCTGCCCGGCTCGCCTGGTTGGCGGTCGTTG
TCGCCTTTTCCCTCCTCCGCGGGGTCGCTGCCGCCGGCTGTCGCCGCCGC
CCAGCCACGCCACCGGCGCCACCCCACCCCCGACAGCAGTAGGCTGCTCC
CGCTGACCTCGAGCGAGTTCGTGCGGCCGCCGTCAGGCCAGCTCATCTTC
TCCCACCGGAAACAAGAGCCATCGTCACCGCCAGAGCCAGAGTCAGAGCC
AGAGCCAGCACTGGTAGCCAAACCCGGGGACGCTCTGCCTTCGTCCCCTG
CCTGTTTCTCCACGCCCCCCCCTCGTCGCCCGCCACGCCCAACACCCGCT
TCATCTTCCTTCTCCTTGGAGCCGGCACGAGAAGATGCTGTGGCTGCCGC
TGCGGCTGTGGCTGGGGCTGGGGTGTCACCGGGGGCGAAGCCAGGCGTTC
CGGGAACCCGAGCACGCTCCGCCGGAGCCGGCGCGTGGAAAGCGAGAGGG
ACGGCTTGCCCCGGGCTCAAGAGCTTCCGCATGTGCGGAGCCGTGGCCCC
ATCGATGTGTGATGCTGCCCGCTCACCGAGGGGGTTCACCCTCGACCCCT
GCCATTCCACAGCCACGGCCTCTTGCCCGGGGTCTCCTTGGTGCTGCCGC
CTGCCCGGCTCGCCTGGTTGGCGGTCGTTGTCGCCTTTTCCCTCCTCCGC
GGGGTCGCTGCCGCCGGCTGTCGCCGCCGCCCAGCCACGCCACCGGCGCC
ACCCCACCCCCGACAGCAGTAGGCTGCTCCCGCTGACCTCGAGCGAGTTC
GTGCGGCCGCCGTCAGGCCAGCTCATCTTCTCCCACCGGAAACAAGAGCC
ATCGTCACCGCCAGAGCCAGAGTCAGAGCCAGAGCCAGCACTGGTAGCCA
AACCCGGGGACGCTCTGCCTTCGTCCCCTGCCTGTTTCTCCACGCCCCCC
CCTCGTCGCCCGCCACGCCCAACACCCGCTTCATCTTCCTTCTCCTTGGA
GCCGGCACGAGAAGATGCTGTGGCTGCCGCTGCGGCTGTGGCTGGGGCTG
GGGTGTCACCGGGGGCGAAGCCAGGCGTTCCGGGAACCCGAGCACGCTCC
GCCGGAGCCGGCGCGTGGAAAGCGAGAGGGACGGCTTGCCCCGGGCTCAA
GAGCTTCCGC
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