mRNA_C-linearis_contig103.833.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig103.833.1
Unique NamemRNA_C-linearis_contig103.833.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:261282..261926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size645
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.833.1prot_C-linearis_contig103.833.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig103 261387..261809 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927374.5497518-UTR-C-linearis_contig103:261281..2613861622927374.5497518-UTR-C-linearis_contig103:261281..261386Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 261282..261386 +
1690879662.2109897-UTR-C-linearis_contig103:261281..2613861690879662.2109897-UTR-C-linearis_contig103:261281..261386Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 261282..261386 +
1622927374.5721128-UTR-C-linearis_contig103:261809..2619261622927374.5721128-UTR-C-linearis_contig103:261809..261926Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 261810..261926 +
1690879662.2279072-UTR-C-linearis_contig103:261809..2619261690879662.2279072-UTR-C-linearis_contig103:261809..261926Chordaria linearis ClinC8C monoicousUTRC-linearis_contig103 261810..261926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927374.5601802-CDS-C-linearis_contig103:261386..2618091622927374.5601802-CDS-C-linearis_contig103:261386..261809Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 261387..261809 +
1690879662.2197273-CDS-C-linearis_contig103:261386..2618091690879662.2197273-CDS-C-linearis_contig103:261386..261809Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 261387..261809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig103.833.1

>prot_C-linearis_contig103.833.1 ID=prot_C-linearis_contig103.833.1|Name=mRNA_C-linearis_contig103.833.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=141bp
MPPHQSTNCLMSQPNHANAQALFRRSSDVLHELIKGMNIGVLLTRGRGLT
LNSVREVFSRVRETPTNAHAWSLNCSRDDDSQHVDDRPEPLQFNEETPFV
IQQRDFPTPGERWPAHAPLPFRSPSPPCCQLQYLRSFVSR*
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mRNA from alignment at C-linearis_contig103:261282..261926+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig103.833.1 ID=mRNA_C-linearis_contig103.833.1|Name=mRNA_C-linearis_contig103.833.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=645bp|location=Sequence derived from alignment at C-linearis_contig103:261282..261926+ (Chordaria linearis ClinC8C monoicous)
TGAGCGAAGGTGTTGCCCATACTTGAGCTGCCCCACAAACAAAGGGTGAT
CTACAAGGGTGGAGACGCGACTCGAGAATACGAGATCACGTTCAGCAAGT
AATCCATGCCTCCACATCAGAGTACAAATTGTCTGATGAGCCAGCCAAAT
CATGCGAACGCCCAAGCGCTCTTCCGCAGATCCAGTGACGTGCTCCACGA
ACTCATCAAGGGTATGAATATTGGCGTTTTGTTAACCCGTGGGCGCGGAC
TTACTCTAAATAGCGTGCGCGAGGTATTCAGCCGCGTGCGTGAAACTCCG
ACAAACGCACATGCCTGGTCGTTGAACTGCAGCCGCGACGACGACAGCCA
ACACGTTGATGACCGTCCAGAGCCACTTCAGTTCAACGAAGAGACCCCCT
TCGTGATCCAGCAGAGAGATTTCCCGACACCGGGGGAGCGTTGGCCAGCC
CACGCTCCTCTTCCCTTTCGCTCACCCTCCCCCCCCTGCTGCCAACTTCA
ATATCTCCGCTCCTTCGTGTCTCGTTGAGAATATCGGTGGGGAGCGAGTG
GACAGGAGGACGCCCAAACCCGCTGTTAGCCAGCACAATGGCAGCCATTT
CGTCTCGTTGATACACGGGCAAGGAGCAAGAAGGGGCAAGAAGCA
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Coding sequence (CDS) from alignment at C-linearis_contig103:261282..261926+

>mRNA_C-linearis_contig103.833.1 ID=mRNA_C-linearis_contig103.833.1|Name=mRNA_C-linearis_contig103.833.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at C-linearis_contig103:261282..261926+ (Chordaria linearis ClinC8C monoicous)
ATGCCTCCACATCAGAGTACAAATTGTCTGATGAGCCAGCCAAATCATGC
GAACGCCCAAGCGCTCTTCCGCAGATCCAGTGACGTGCTCCACGAACTCA
TCAAGGGTATGAATATTGGCGTTTTGTTAACCCGTGGGCGCGGACTTACT
CTAAATAGCGTGCGCGAGGTATTCAGCCGCGTGCGTGAAACTCCGACAAA
CGCACATGCCTGGTCGTTGAACTGCAGCCGCGACGACGACAGCCAACACG
TTGATGACCGTCCAGAGCCACTTCAGTTCAACGAAGAGACCCCCTTCGTG
ATCCAGCAGAGAGATTTCCCGACACCGGGGGAGCGTTGGCCAGCCCACGC
TCCTCTTCCCTTTCGCTCACCCTCCCCCCCCTGCTGCCAACTTCAATATC
TCCGCTCCTTCGTGTCTCGTTGAATGCCTCCACATCAGAGTACAAATTGT
CTGATGAGCCAGCCAAATCATGCGAACGCCCAAGCGCTCTTCCGCAGATC
CAGTGACGTGCTCCACGAACTCATCAAGGGTATGAATATTGGCGTTTTGT
TAACCCGTGGGCGCGGACTTACTCTAAATAGCGTGCGCGAGGTATTCAGC
CGCGTGCGTGAAACTCCGACAAACGCACATGCCTGGTCGTTGAACTGCAG
CCGCGACGACGACAGCCAACACGTTGATGACCGTCCAGAGCCACTTCAGT
TCAACGAAGAGACCCCCTTCGTGATCCAGCAGAGAGATTTCCCGACACCG
GGGGAGCGTTGGCCAGCCCACGCTCCTCTTCCCTTTCGCTCACCCTCCCC
CCCCTGCTGCCAACTTCAATATCTCCGCTCCTTCGTGTCTCGTTGA
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