prot_C-linearis_contig103.843.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig103.843.1
Unique Nameprot_C-linearis_contig103.843.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length1338
Homology
BLAST of mRNA_C-linearis_contig103.843.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE)

HSP 1 Score: 568 bits (1463), Expect = 4.010e-178
Identity = 509/839 (60.67%), Postives = 561/839 (66.87%), Query Frame = 0
Query:  490 APPLPKAPVLGCAGAWLGARVRADPRPXXXXXXXSCSRRGVAASAVAEAVACSQRAPRYPLPRKRRFEAMGLG-EGKEGAADGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGDRWYEHYHAVQRVRDTEVGTKGGGGAPQMLPGEVAALRRQRLIKAAEPLAQRGLTRFQLSQMLEEKTKAFKDIRARLRVVLERKPRVLPPVKPPRRRKTLWDFLLDEMRLIATDYHEERKLGRHLLKGVANRAQLARRELCEGRPEARDGRVADAGKAICGHLSLLASNPPRPATATAAIKLEPTAGAPAAXXXXXXKPAQNAAGGAVAAGKEGGREGELTMPELSRIGFEVEQSMTSAKALLDATLSGDAITAPPPLAAVKAEGAGVGDAGESNGAAAAGQSETGFSAGDLAAPPGQSSWGTAARLLPHQTQALGWLKDLASRGLGGVLCDEAGTGKTVVAAASVALVAACRAMVEERRVQGFVNQERNKRLASGLVNEAVKGEAEKTTEAKVAAGGAAXXXXXXXXXXXXXXXXXXXXXKAS-PDKGPRVSRPRPGRLAPPPQLVVVPSWAMARWRMELAEACPRLVVKVWEEWRDQERRLRRRHRCRSPPSTTSXXXXXXXXXXXXXXXXXXXXXXXXXXSGGTAASAPLPSEGXXXXAAGGRLPSAKSSRWSSADVVLCSLERLEEVAGEGGTVDSADARLARSVGWSQVVLDVRGVPATPPAGPTSGTGGGGSV--------------------SGRGPRINWPLLSSLAKGAALALAVDD 1306
            +PPLP AP+LGCAG WLGARV ADPRPXXXXXXX           VAEAVA SQR   YPLPRKRRF  +GLG +G EGA                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     WY+HYHAV+RVRD E  ++GGGG P + PGEVAA+RRQRL+KAAEP  QRGLTRFQLSQMLEEKTKAFKD+RARLR+VLERKPR+LPPVKPPRRRKTLWDFLLDEMRLIATDY+EERKL RHLL+GVANR +LARRE CEGRP+ARDGRVADAG AIC HLSLL S+PP                    XXXXXXK    A+  + + G  GG E ELTMPELSRIGFEVEQ  T AKAL++A L+GDA  A P    VK EG    D    NGAA  G +E  FS+ +L+  P   SWG A  LLPHQ +AL W++ LA RGLGGVLCD+ GTGKTV AAA+VA+VAACR++VE  R   F+ QE  KRL+  LV    KGEAE++     AA GA+   XXXXXXXXXXXXX     KAS P +G    RPRPG LAPPPQLVVVPSWAMARW MELA+ACPRLV+KVWEEWR QE                 XXXXXXXXXXXXXX             G  +  A LP                 ++R SS DVVLCSLERL EV  +GG   SADARLARSV WSQVVLDVRGV     A P                              +G    +NWPL SSLAKGAALALA+DD
Sbjct:   63 SPPLPHAPILGCAGRWLGARVCADPRPXXXXXXXXXXXXXXXXXXVAEAVASSQRDLGYPLPRKRRFRPLGLGGDGDEGATGA---AFEAKVEGEGGVTRNGGVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWYQHYHAVRRVRDNEA-SRGGGGLP-IPPGEVAAMRRQRLVKAAEPQNQRGLTRFQLSQMLEEKTKAFKDVRARLRLVLERKPRILPPVKPPRRRKTLWDFLLDEMRLIATDYNEERKLARHLLRGVANRTRLARREFCEGRPQARDGRVADAGVAICRHLSLLGSSPPXXXXXXXXXXXXXXXXX---XXXXXXKGPLLASCPSTSGGIGGGEEMELTMPELSRIGFEVEQLTTRAKALVEAALAGDAGKASP----VKMEGLDALDGTGINGAA--GYNE--FSSRNLSRAP--DSWGMAVHLLPHQEKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLVQE-EKRLSEHLV----KGEAEESG----AASGASSAGXXXXXXXXXXXXXGRTSTKASRPGRGALAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXX--------------XXXXXXXXXXXXXXLQQKLSPQATAAGGSVSGKARLPP----------------TARRSSVDVVLCSLERLAEV--DGGV--SADARLARSVRWSQVVLDVRGVSTA--AAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKAGCRFTVNWPLFSSLAKGAALALALDD 838          
BLAST of mRNA_C-linearis_contig103.843.1 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI)

HSP 1 Score: 526 bits (1355), Expect = 2.530e-155
Identity = 471/747 (63.05%), Postives = 518/747 (69.34%), Query Frame = 0
Query:  490 APPLPKAPVLGCAGAWLGARVRADPRPXXXXXXXSCSRRGVAASAVAEAVACSQRAPRYPLPRKRRFEAMGLGEGKEGAADGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGDRWYEHYHAVQRVRDTEVGTKGGGGAPQMLPGEVAALRRQRLIKAAEPLAQRGLTRFQLSQMLEEKTKAFKDIRARLRVVLERKPRVLPPVKPPRRRKTLWDFLLDEMRLIATDYHEERKLGRHLLKGVANRAQLARRELCEGRPEARDGRVADAGKAICGHLSLLASNPPRPATATAAIKLEPTAGAPAAXXXXXXKPAQNAAGGAVAAGKE--GGREGELTMPELSRIGFEVEQSMTSAKALLDATLSGDAITAPPPLAAVKAEGAGVGDAGESNGAAAAGQSETGFSAGDLAAPPGQSSWGTAARLLPHQTQALGWLKDLASRGLGGVLCDEAGTGKTVVAAASVALVAACRAMVEERRVQGFVNQERNKRLASGLVNEAVKGEAEKTTEAKVAAGGAAXXXXXXXXXXXXXXXXXXXXXKASPDK-GPRVSRPRPGRLAPPPQLVVVPSWAMARWRMELAEACPRLVVKVWEEWRDQERRLRRRHRCRSPPSTTSXXXXXXXXXXXXXXXXXXXXXXXXXXSGGTAASAPLPSEGXXXXAAGGRLPSAKSSRWSSADVVLCSLERLEEVAG 1233
            +PPLP APVLGCAG WLGARV ADPRPXXXXXXX           VAEAVA SQR   YPLPRKRRF  +GLGE  + AA G                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         D+WYEHYHAV+RVRD E  ++G GG P +LPGEVAA+RR RL+KAAEP  QRGLTRFQLSQMLEEKTKAFKD+RARLR+VLERKPR+LPPVKPPRRRKTLWDFLLDEMRLIATDY+EERKL RHLL+GVANR +LARRELCEGRP+ARDGRVADAG AIC HLSLLAS+P                     XXX     A  ++GG     +   GG E ELTMPELSRIGFEVEQ  T AKAL++A+L+GDA  A P    VK EG    D   SNG A  G  E  FS+ +L+  P   SWG A  LLPHQ +AL W++ LA RGLGGVLCD+ GTGKTV AAA+VA+VAACR++VE  R   F+ QE+ KRL+  LV    KGEAE++     AA G  XXXXXXXXXXXXXXXXXXXXXKASP + G    RPRPG LAPPPQLVVVPSWAMARW MELA+ACPRLV+KVWEEWR QE                 XXXXXXXXXXXXXXX            G  +  A LP                 ++R SSADVVLCSLERL EV G
Sbjct:  502 SPPLPHAPVLGCAGLWLGARVCADPRPXXXXXXXXXXXXXXXXXXVAEAVASSQRDLGYPLPRKRRFRPVGLGEDGDKAATGTAFEAKAEAEGGVTRNGGVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------DQWYEHYHAVRRVRDNEA-SRGEGGLP-ILPGEVAAMRRHRLVKAAEPQNQRGLTRFQLSQMLEEKTKAFKDVRARLRLVLERKPRILPPVKPPRRRKTLWDFLLDEMRLIATDYNEERKLARHLLRGVANRTRLARRELCEGRPQARDGRVADAGVAICRHLSLLASSPXXXXXXXXXXXXXXXXXXXXXXXXKGPLLASWSSGGVGGETEAVGGGEEVELTMPELSRIGFEVEQLTTRAKALVEASLAGDAGKASP----VKIEGMVASDGPGSNGVA--GYEE--FSSRNLSRAP--DSWGMAVHLLPHQAKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLAQEK-KRLSERLV----KGEAEESG----AASGXXXXXXXXXXXXXXXXXXXXXXXKASPPRQGTLAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXX----------XXXXXXXXXXXXXXXXXXXQQKLSPQATAAGGSVSGKARLPP----------------TARRSSADVVLCSLERLAEVDG 1192          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.843.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHX4_9PHAE4.010e-17860.67SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
D7FME7_ECTSI2.530e-15563.05Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 269..314
NoneNo IPR availableCOILSCoilCoilcoord: 375..421
NoneNo IPR availablePANTHERPTHR23196PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEINcoord: 60..1173
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 984..1257
e-value: 1.7E-7
score: 30.3
IPR038718SNF2-like, N-terminal domain superfamilyGENE3D3.40.50.10810coord: 951..1026
e-value: 1.7E-8
score: 35.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 964..1148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:400390..420086 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.843.1mRNA_C-linearis_contig103.843.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig103 400097..421777 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig103.843.1 ID=prot_C-linearis_contig103.843.1|Name=mRNA_C-linearis_contig103.843.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1338bp
MSSRTSKRRSGVGASNASSKGGAAGGGGAAEDTGDEDGGGRSLRKTPSRR
TNSRGAESQDRRKRQRREGQRKEVVEYKEAVLDVIVTAKDSRPGAATPGG
RGRTPPLPPRSRGRRPDRPLPRKTEKTVSAATATATTKTRTKTTKKRRKK
KRKKMKTRKRTEKEKKPATTTPTPPPPRRPSLRTGKGHPQPGAGRRGRVG
ARRRPPQLPPGEKLPLLLPRPPPPPPLNGPAAAAAAPATGNNPTADVAAK
QAVAAAAAAAAAAAAAAAAAAAQQQAAAATQAAAAVRAQQAQAAAAAEAD
KARAERERLEVVARARAAAQKARGEQNVLTPEADAKAKLDAAAAAAAAVS
GAGATVSNAAAAASAAPACTSSAAAAAAQQAQAQQAQQAQQAQQAQQAQQ
AQQAQQAQQAQQAAAQQARAQAQAQAHAKAQAAAAQAQAQVQAQAHAHAQ
AQAQAQAQAQAQAQATPAAAPAAAAAAAAAAAAAAAGDNAPPLPKAPVLG
CAGAWLGARVRADPRPPPPPPPPSCSRRGVAASAVAEAVACSQRAPRYPL
PRKRRFEAMGLGEGKEGAADGDDDDNDDAAGVVEAGGASVSGEAAGGAGG
GGGTGGGGGGGAATGAIPPLDAPAAAAAAGAAPSSGVEAEGGGPAAASTA
GGALAAAANGGDRWYEHYHAVQRVRDTEVGTKGGGGAPQMLPGEVAALRR
QRLIKAAEPLAQRGLTRFQLSQMLEEKTKAFKDIRARLRVVLERKPRVLP
PVKPPRRRKTLWDFLLDEMRLIATDYHEERKLGRHLLKGVANRAQLARRE
LCEGRPEARDGRVADAGKAICGHLSLLASNPPRPATATAAIKLEPTAGAP
AAAAAAAAKPAQNAAGGAVAAGKEGGREGELTMPELSRIGFEVEQSMTSA
KALLDATLSGDAITAPPPLAAVKAEGAGVGDAGESNGAAAAGQSETGFSA
GDLAAPPGQSSWGTAARLLPHQTQALGWLKDLASRGLGGVLCDEAGTGKT
VVAAASVALVAACRAMVEERRVQGFVNQERNKRLASGLVNEAVKGEAEKT
TEAKVAAGGAASAATASAGSSADKDGSASASSKASPDKGPRVSRPRPGRL
APPPQLVVVPSWAMARWRMELAEACPRLVVKVWEEWRDQERRLRRRHRCR
SPPSTTSSAPPSAPAPSPAPAPAPAPASAPASASGGTAASAPLPSEGGAG
SAAGGRLPSAKSSRWSSADVVLCSLERLEEVAGEGGTVDSADARLARSVG
WSQVVLDVRGVPATPPAGPTSGTGGGGSVSGRGPRINWPLLSSLAKGAAL
ALAVDDTPTPPPPLRRPLLAPAPTPMPLRPKNTASPA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000330SNF2_N
IPR038718SNF2-like_sf
IPR027417P-loop_NTPase