mRNA_C-linearis_contig103.843.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig103.843.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE) HSP 1 Score: 568 bits (1464), Expect = 2.460e-176 Identity = 509/839 (60.67%), Postives = 561/839 (66.87%), Query Frame = 2 Query: 1781 APPLPKAPVLGCAGAWLGARVRADPRPXXXXXXXSCSRRGVAASAVAEAVACSQRAPRYPLPRKRRFEAMGLG-EGKEGAADGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGDRWYEHYHAVQRVRDTEVGTKGGGGAPQMLPGEVAALRRQRLIKAAEPLAQRGLTRFQLSQMLEEKTKAFKDIRARLRVVLERKPRVLPPVKPPRRRKTLWDFLLDEMRLIATDYHEERKLGRHLLKGVANRAQLARRELCEGRPEARDGRVADAGKAICGHLSLLASNPPRPATATAAIKLEPTAGAPAAXXXXXXKPAQNAAGGAVAAGKEGGREGELTMPELSRIGFEVEQSMTSAKALLDATLSGDAITAPPPLAAVKAEGAGVGDAGESNGAAAAGQSETGFSAGDLAAPPGQSSWGTAARLLPHQTQALGWLKDLASRGLGGVLCDEAGTGKTVVAAASVALVAACRAMVEERRVQGFVNQERNKRLASGLVNEAVKGEAEKTTEAKVAAGGAAXXXXXXXXXXXXXXXXXXXXXKAS-PDKGPRVSRPRPGRLAPPPQLVVVPSWAMARWRMELAEACPRLVVKVWEEWRDQERRLRRRHRCRSPPSTTSXXXXXXXXXXXXXXXXXXXXXXXXXXSGGTAASAPLPSEGXXXXAAGGRLPSAKSSRWSSADVVLCSLERLEEVAGEGGTVDSADARLARSVGWSQVVLDVRGVPATPPAGPTSGTGGGGSV--------------------SGRGPRINWPLLSSLAKGAALALAVDD 4231
+PPLP AP+LGCAG WLGARV ADPRPXXXXXXX VAEAVA SQR YPLPRKRRF +GLG +G EGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX WY+HYHAV+RVRD E ++GGGG P + PGEVAA+RRQRL+KAAEP QRGLTRFQLSQMLEEKTKAFKD+RARLR+VLERKPR+LPPVKPPRRRKTLWDFLLDEMRLIATDY+EERKL RHLL+GVANR +LARRE CEGRP+ARDGRVADAG AIC HLSLL S+PP XXXXXXK A+ + + G GG E ELTMPELSRIGFEVEQ T AKAL++A L+GDA A P VK EG D NGAA G +E FS+ +L+ P SWG A LLPHQ +AL W++ LA RGLGGVLCD+ GTGKTV AAA+VA+VAACR++VE R F+ QE KRL+ LV KGEAE++ AA GA+ XXXXXXXXXXXXX KAS P +G RPRPG LAPPPQLVVVPSWAMARW MELA+ACPRLV+KVWEEWR QE XXXXXXXXXXXXXX G + A LP ++R SS DVVLCSLERL EV +GG SADARLARSV WSQVVLDVRGV A P +G +NWPL SSLAKGAALALA+DD
Sbjct: 63 SPPLPHAPILGCAGRWLGARVCADPRPXXXXXXXXXXXXXXXXXXVAEAVASSQRDLGYPLPRKRRFRPLGLGGDGDEGATGA---AFEAKVEGEGGVTRNGGVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWYQHYHAVRRVRDNEA-SRGGGGLP-IPPGEVAAMRRQRLVKAAEPQNQRGLTRFQLSQMLEEKTKAFKDVRARLRLVLERKPRILPPVKPPRRRKTLWDFLLDEMRLIATDYNEERKLARHLLRGVANRTRLARREFCEGRPQARDGRVADAGVAICRHLSLLGSSPPXXXXXXXXXXXXXXXXX---XXXXXXKGPLLASCPSTSGGIGGGEEMELTMPELSRIGFEVEQLTTRAKALVEAALAGDAGKASP----VKMEGLDALDGTGINGAA--GYNE--FSSRNLSRAP--DSWGMAVHLLPHQEKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLVQE-EKRLSEHLV----KGEAEESG----AASGASSAGXXXXXXXXXXXXXGRTSTKASRPGRGALAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXX--------------XXXXXXXXXXXXXXLQQKLSPQATAAGGSVSGKARLPP----------------TARRSSVDVVLCSLERLAEV--DGGV--SADARLARSVRWSQVVLDVRGVSTA--AAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKAGCRFTVNWPLFSSLAKGAALALALDD 838
BLAST of mRNA_C-linearis_contig103.843.1 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI) HSP 1 Score: 526 bits (1355), Expect = 1.530e-153 Identity = 471/747 (63.05%), Postives = 518/747 (69.34%), Query Frame = 2 Query: 1781 APPLPKAPVLGCAGAWLGARVRADPRPXXXXXXXSCSRRGVAASAVAEAVACSQRAPRYPLPRKRRFEAMGLGEGKEGAADGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGDRWYEHYHAVQRVRDTEVGTKGGGGAPQMLPGEVAALRRQRLIKAAEPLAQRGLTRFQLSQMLEEKTKAFKDIRARLRVVLERKPRVLPPVKPPRRRKTLWDFLLDEMRLIATDYHEERKLGRHLLKGVANRAQLARRELCEGRPEARDGRVADAGKAICGHLSLLASNPPRPATATAAIKLEPTAGAPAAXXXXXXKPAQNAAGGAVAAGKE--GGREGELTMPELSRIGFEVEQSMTSAKALLDATLSGDAITAPPPLAAVKAEGAGVGDAGESNGAAAAGQSETGFSAGDLAAPPGQSSWGTAARLLPHQTQALGWLKDLASRGLGGVLCDEAGTGKTVVAAASVALVAACRAMVEERRVQGFVNQERNKRLASGLVNEAVKGEAEKTTEAKVAAGGAAXXXXXXXXXXXXXXXXXXXXXKASPDK-GPRVSRPRPGRLAPPPQLVVVPSWAMARWRMELAEACPRLVVKVWEEWRDQERRLRRRHRCRSPPSTTSXXXXXXXXXXXXXXXXXXXXXXXXXXSGGTAASAPLPSEGXXXXAAGGRLPSAKSSRWSSADVVLCSLERLEEVAG 4012
+PPLP APVLGCAG WLGARV ADPRPXXXXXXX VAEAVA SQR YPLPRKRRF +GLGE + AA G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+WYEHYHAV+RVRD E ++G GG P +LPGEVAA+RR RL+KAAEP QRGLTRFQLSQMLEEKTKAFKD+RARLR+VLERKPR+LPPVKPPRRRKTLWDFLLDEMRLIATDY+EERKL RHLL+GVANR +LARRELCEGRP+ARDGRVADAG AIC HLSLLAS+P XXX A ++GG + GG E ELTMPELSRIGFEVEQ T AKAL++A+L+GDA A P VK EG D SNG A G E FS+ +L+ P SWG A LLPHQ +AL W++ LA RGLGGVLCD+ GTGKTV AAA+VA+VAACR++VE R F+ QE+ KRL+ LV KGEAE++ AA G XXXXXXXXXXXXXXXXXXXXXKASP + G RPRPG LAPPPQLVVVPSWAMARW MELA+ACPRLV+KVWEEWR QE XXXXXXXXXXXXXXX G + A LP ++R SSADVVLCSLERL EV G
Sbjct: 502 SPPLPHAPVLGCAGLWLGARVCADPRPXXXXXXXXXXXXXXXXXXVAEAVASSQRDLGYPLPRKRRFRPVGLGEDGDKAATGTAFEAKAEAEGGVTRNGGVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------DQWYEHYHAVRRVRDNEA-SRGEGGLP-ILPGEVAAMRRHRLVKAAEPQNQRGLTRFQLSQMLEEKTKAFKDVRARLRLVLERKPRILPPVKPPRRRKTLWDFLLDEMRLIATDYNEERKLARHLLRGVANRTRLARRELCEGRPQARDGRVADAGVAICRHLSLLASSPXXXXXXXXXXXXXXXXXXXXXXXXKGPLLASWSSGGVGGETEAVGGGEEVELTMPELSRIGFEVEQLTTRAKALVEASLAGDAGKASP----VKIEGMVASDGPGSNGVA--GYEE--FSSRNLSRAP--DSWGMAVHLLPHQAKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLAQEK-KRLSERLV----KGEAEESG----AASGXXXXXXXXXXXXXXXXXXXXXXXKASPPRQGTLAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXX----------XXXXXXXXXXXXXXXXXXXQQKLSPQATAAGGSVSGKARLPP----------------TARRSSADVVLCSLERLAEVDG 1192 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.843.1 >prot_C-linearis_contig103.843.1 ID=prot_C-linearis_contig103.843.1|Name=mRNA_C-linearis_contig103.843.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1338bp MSSRTSKRRSGVGASNASSKGGAAGGGGAAEDTGDEDGGGRSLRKTPSRRback to top mRNA from alignment at C-linearis_contig103:400097..421777- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.843.1 ID=mRNA_C-linearis_contig103.843.1|Name=mRNA_C-linearis_contig103.843.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=21681bp|location=Sequence derived from alignment at C-linearis_contig103:400097..421777- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:400097..421777- >mRNA_C-linearis_contig103.843.1 ID=mRNA_C-linearis_contig103.843.1|Name=mRNA_C-linearis_contig103.843.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=8028bp|location=Sequence derived from alignment at C-linearis_contig103:400097..421777- (Chordaria linearis ClinC8C monoicous)back to top |