mRNA_C-linearis_contig103.837.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig103.837.1
Unique NamemRNA_C-linearis_contig103.837.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:314247..315239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927373.9054568-CDS-C-linearis_contig103:314246..3145491622927373.9054568-CDS-C-linearis_contig103:314246..314549Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 314247..314549 -
1690879661.8227277-CDS-C-linearis_contig103:314246..3145491690879661.8227277-CDS-C-linearis_contig103:314246..314549Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 314247..314549 -
1622927373.9209077-CDS-C-linearis_contig103:315209..3152391622927373.9209077-CDS-C-linearis_contig103:315209..315239Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 315210..315239 -
1690879661.8430836-CDS-C-linearis_contig103:315209..3152391690879661.8430836-CDS-C-linearis_contig103:315209..315239Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 315210..315239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.837.1prot_C-linearis_contig103.837.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig103 314247..315239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig103.837.1

>prot_C-linearis_contig103.837.1 ID=prot_C-linearis_contig103.837.1|Name=mRNA_C-linearis_contig103.837.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=111bp
SRIRKRFTLKKPLSSRAGNAETGASAASAAAAAEATVAAHNADFAAKSSI
NNPSSRTASASGAAPANGGGGDPGRDGGGGGGGGWGSILGAPQMLPPSSL
PSSHAHVRNAG
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mRNA from alignment at C-linearis_contig103:314247..315239-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig103.837.1 ID=mRNA_C-linearis_contig103.837.1|Name=mRNA_C-linearis_contig103.837.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=993bp|location=Sequence derived from alignment at C-linearis_contig103:314247..315239- (Chordaria linearis ClinC8C monoicous)
TCGAGAATTCGGAAGCGATTCACTCTTAAGGTGAGCGGGGTCAAGTTAAG
TTGTCGGGCGGGTTTGTGACGGGGGGACCAGGATTTTGGGCGTGAAAAGG
ATCGGCCGTATTTTTGCGGTGAGCGCCAGATTGACCCCCGCGTGGCTTTG
TTGTTGTGTGTCCAAACGGCTTTTGTGACTGCCGATATGGGGTTGTCGGG
ATTTCCCTTGGGGGTGGTATGGCGTTACCGCGGTGCTTTTTCTGCCGTGG
GGTTTCTCCGAGGTGGTTCGTAGACACTCAACCAGCGGGTTAACGCTTGT
TGAGCACGCTGTCCCCCTGAAAAGTATTAAAACACATCTTGACCGGAGGT
ATATTAAAGAAAATGACGGGGTGCGGCCGCCGGCAGCGATGGGGGCCTAA
AGGGCAGAAGGTTAGGGTTAAGGCAACCGAGATGTAAATGTGTGCTTTAT
ATTGACGCTTAGGGAGCGGTGGTTGCTGTGGCGGTGGAGGTGACTCTAGC
CGCGTCCTGAGGTCCATTCTCAAGGGTCAGAAAAAATCCAGAAAAAATCG
GACGGGGTTGATGGGCGATTCCAGGCTGGGCGAGGGAACTTACGAAGGGG
GCACACTGAGGGTCCATGGCTTTTTTCTCGGAAAATACTCCAACGCCCCC
GGGGTCCCCTCTACCCGCGTCCCCCCCCCCCGTAACCCAGAAACCACTCT
CGAGCCGTGCGGGCAACGCAGAAACGGGGGCGTCAGCGGCCTCGGCGGCA
GCGGCAGCCGAAGCGACCGTGGCCGCCCACAACGCGGACTTCGCCGCCAA
GAGCAGTATCAACAACCCAAGCAGCAGGACTGCGTCGGCATCAGGAGCGG
CACCCGCAAACGGCGGTGGCGGTGATCCCGGCAGGGACGGCGGCGGCGGG
GGCGGCGGCGGCTGGGGCAGCATCCTGGGGGCCCCACAGATGCTACCCCC
GTCTTCGCTTCCCTCTTCCCACGCTCACGTGCGCAACGCCGGA
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Coding sequence (CDS) from alignment at C-linearis_contig103:314247..315239-

>mRNA_C-linearis_contig103.837.1 ID=mRNA_C-linearis_contig103.837.1|Name=mRNA_C-linearis_contig103.837.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at C-linearis_contig103:314247..315239- (Chordaria linearis ClinC8C monoicous)
TCGAGAATTCGGAAGCGATTCACTCTTAAGTCGAGAATTCGGAAGCGATT
CACTCTTAAGAAACCACTCTCGAGCCGTGCGGGCAACGCAGAAACGGGGG
CGTCAGCGGCCTCGGCGGCAGCGGCAGCCGAAGCGACCGTGGCCGCCCAC
AACGCGGACTTCGCCGCCAAGAGCAGTATCAACAACCCAAGCAGCAGGAC
TGCGTCGGCATCAGGAGCGGCACCCGCAAACGGCGGTGGCGGTGATCCCG
GCAGGGACGGCGGCGGCGGGGGCGGCGGCGGCTGGGGCAGCATCCTGGGG
GCCCCACAGATGCTACCCCCGTCTTCGCTTCCCTCTTCCCACGCTCACGT
GCGCAACGCCGGAAAACCACTCTCGAGCCGTGCGGGCAACGCAGAAACGG
GGGCGTCAGCGGCCTCGGCGGCAGCGGCAGCCGAAGCGACCGTGGCCGCC
CACAACGCGGACTTCGCCGCCAAGAGCAGTATCAACAACCCAAGCAGCAG
GACTGCGTCGGCATCAGGAGCGGCACCCGCAAACGGCGGTGGCGGTGATC
CCGGCAGGGACGGCGGCGGCGGGGGCGGCGGCGGCTGGGGCAGCATCCTG
GGGGCCCCACAGATGCTACCCCCGTCTTCGCTTCCCTCTTCCCACGCTCA
CGTGCGCAACGCCGGA
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