prot_C-linearis_contig103.834.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig103.834.1
Unique Nameprot_C-linearis_contig103.834.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length557
Homology
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BLAST of mRNA_C-linearis_contig103.834.1 vs. uniprot
Match: D7FME8_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME8_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.200e-27
Identity = 118/204 (57.84%), Postives = 131/204 (64.22%), Query Frame = 0 
Query:  358 GEGAMDVAAPVTCKPALEALPEPAAHDPADGDPDMSQLSQD-GVELSQASALSISHLADTMEEPLSQATHWLAVFKDSQEAWSLDDVLLSQGEEGAKSGGXXXXXXXXXXXXXXXXXDEAAIDSVEAVALAAEALSPSKQHHHQQAPGVAGAGSALSPGAAGSTPSPRVLSPSSSAA---GNTATELSPMHPPPPLLPGAAGGR 557
            G G  +VA+P     ALE L +PA ++P D +  +SQL+Q+ GV+LSQASALSISHLAD  EEPLSQAT WLAVFKDSQEAWSLDD+LLS G   A+    XXXXXXXXXXXXXXXX     DSV AVALAAEALSPS               S LS        SPR+LSP S A      TA ELSPM PP PL  GA   R
Sbjct:   21 GGGVAEVASPAASTAALETLADPAVNEPQDVE--LSQLTQETGVDLSQASALSISHLADA-EEPLSQATQWLAVFKDSQEAWSLDDILLSPGGAEAEX---XXXXXXXXXXXXXXXXXXXXXDSVGAVALAAEALSPSXXXXXXXXXXXXXGSSTLSL-------SPRLLSPGSGAVTPNNATAAELSPMLPPAPLPSGAVVSR 211
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.834.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FME8_ECTSI1.200e-2757.84Nudix hydrolase domain-containing protein n=1 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 255..300
NoneNo IPR availableCOILSCoilCoilcoord: 462..482
NoneNo IPR availablePANTHERPTHR23355RIBONUCLEASEcoord: 89..353
NoneNo IPR availablePANTHERPTHR23355:SF54coord: 89..353
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..557
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..16

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:267708..271341 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.834.1mRNA_C-linearis_contig103.834.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig103 267708..273050 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig103.834.1 ID=prot_C-linearis_contig103.834.1|Name=mRNA_C-linearis_contig103.834.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=557bp
MKRSRAPSSVAAAAAVNSGGGGRSARGTTTAARSNSERLLPSNSSSNLAP
GCPARSTSGEESQASLEVDVGMEDFSHGGGSNSQSGKPAMRRRSSRNSPA
RSSTSSTSGSSTSGSSGKKQKTATAGATPSPPNSNLLNGSPEKAKKGASR
AAAARSPKSQTTAEANVASNGAGGGGGTAAAAGAKTQRAAGGPAKGGPEK
RGRARSSGDGGDEAGGGVAAKAADGVVKKEGGAAGGGGSPPPKKKKKYIR
NPETHKEYRARMEAELSQARRMLEEGNAAMVELARDYKRQQAMIEKYRND
DTSLQSFSQLTQSQPTKQQQQMQQHQQLQLLQQSPGQQQQQSQQQQQQQQ
VQPATPAGEGAMDVAAPVTCKPALEALPEPAAHDPADGDPDMSQLSQDGV
ELSQASALSISHLADTMEEPLSQATHWLAVFKDSQEAWSLDDVLLSQGEE
GAKSGGDDDDDANEQEKEAAEAEDEAAIDSVEAVALAAEALSPSKQHHHQ
QAPGVAGAGSALSPGAAGSTPSPRVLSPSSSAAGNTATELSPMHPPPPLL
PGAAGGR
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